Salinicola rhizosphaerae (KCTC 32998, NBRC 110222, MSSRFH1)

Name: Salinicola rhizosphaerae (KCTC 32998, NBRC 110222, MSSRFH1)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140936

Type strain

Strain Designation MSSRFH1

Culture col. no. KCTC 32998 NBRC 110222 MSSRFH1

NCBI tax ID(s) 1443141

Special Collections KCTC Literature strains

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Salinicola rhizosphaerae MSSRFH1 is an aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from The rhizosphere region of Avicennia marina from Pichavaram mangroves.

Gram-negative motile rod-shaped colony-forming aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 286413

KCTC 32998,NBRC 110222

@ref 20215

Last LPSN update 2026-02-09 11:33:45

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Oceanospirillales

Family Halomonadaceae

Genus Salinicola

Species Salinicola rhizosphaerae

Full scientific name Salinicola rhizosphaerae Raju et al. 2016

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
43818	negative	rod-shaped
125438	negative		99.469
125439	negative		99.8
125439			92.3

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
43818	2 cm	Yellow	circular	2.5 days	Zobel marine agar containing 8 % (w/v) NaCl

Culture and growth conditions

Culture medium

@ref	Name	Growth
43818	Zobel marine agar containing 8 % (w/v) NaCl

Culture temp

@ref	Growth	Type	Temperature (°C)
43818	positive	growth	25-37
43818	positive	optimum	28

Culture pH

@ref	Ability	Type	PH	PH range
43818	positive	optimum	7
43818	positive	growth	4-9	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
43818	aerobe
125439	aerobe	95.5

Spore formation

@ref	Spore formation	Confidence
125439		99.2

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43818	NaCl	positive	growth	0.5-30 %(w/v)
43818	NaCl	positive	optimum	10-15 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43818	22599 ChEBI	arabinose	-	carbon source
43818	16947 ChEBI	citrate	-	carbon source
43818	16024 ChEBI	D-mannose	+	carbon source
43818	28757 ChEBI	fructose	+	builds acid from
43818	28757 ChEBI	fructose	+	carbon source
43818	28260 ChEBI	galactose	+	builds acid from
43818	28260 ChEBI	galactose	+	carbon source
43818	17234 ChEBI	glucose	+	builds acid from
43818	17234 ChEBI	glucose	+	carbon source
43818	17234 ChEBI	glucose	+	fermentation
43818	17716 ChEBI	lactose	+	carbon source
43818	25115 ChEBI	malate	-	carbon source
43818	17306 ChEBI	maltose	-	carbon source
43818	29864 ChEBI	mannitol	+	builds acid from
43818	29864 ChEBI	mannitol	+	carbon source
43818	17268 ChEBI	myo-inositol	-	carbon source
43818	16634 ChEBI	raffinose	+	carbon source
43818	30911 ChEBI	sorbitol	-	carbon source
43818	28017 ChEBI	starch	-	hydrolysis
43818	27082 ChEBI	trehalose	-	builds acid from
43818	27082 ChEBI	trehalose	-	carbon source
43818	16199 ChEBI	urea	-	hydrolysis

Antibiotic resistance

@ref	ChEBI	Metabolite	Resistance conc.	Sensitivity conc.
43818	2637	amikacin	10 µg (disc)
43818	3393	carbenicillin	100 µg (disc)
43818	204928	cefotaxime		30 µg (disc)
43818	17698	chloramphenicol		30 µg (disc)
43818	100241	ciprofloxacin		10 µg (disc)
43818	48923	erythromycin	10 µg (disc)
43818	17833	gentamicin	10 µg (disc)
43818	7507	neomycin	30 µg (disc)
43818	100246	norfloxacin		10 µg (disc)
43818	8309	polymyxin b		30 µg (disc)
43818	17076	streptomycin	25 µg (disc)
43818	28864	tobramycin	10 µg (disc)
43818	28001	vancomycin	30 µg (disc)

Metabolite production

@ref	Chebi-ID	Metabolite
43818	15688 ChEBI	acetoin
43818	16136 ChEBI	hydrogen sulfide
43818	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Citrate test	Methylred-test
43818	15688 ChEBI	acetoin	-
43818	16947 ChEBI	citrate		-
43818	17234 ChEBI	glucose			+

Enzymes

@ref	Value	Activity	Ec
43818	catalase	-	1.11.1.6
43818	cytochrome oxidase	-	1.9.3.1

Fatty acid profile

Metadata FA analysis

@ref

43818

Fatty acid	Percentage
C18:1ω7c	33.7
C16:0	22.7
C19:0cycloω8c	14
C16:1ω7c / C16:1ω6c	5.3
C12:0 3OH	5
C12:0	4.4
C14:0 3OH / C16:1 iso I	4.3
C10:0	2.4
C17:0cyclo	1.9
C18:0	1.5
C14:0	1
C16:0 3OH	0.6
C12:0 2OH	0.3
C20:1ω7c	0.3
C18:1ω5c	0.25

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Mangrove
#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Rhizosphere

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
43818	The rhizosphere region of Avicennia marina from Pichavaram mangroves	Tamil Nadu	India	IND	Asia

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1465271v1 assembly for Salinicola rhizosphaerae KCTC 32998	scaffold	GCA_014652715	1443141.3	2995489511	1443141	59.77

16S sequences

@ref	Description	Accession	Database
43818	Salinicola rhizosphaerae strain MSSRFH1 16S ribosomal RNA gene, partial sequence	KF898345

GC content

@ref	GC-content (mol%)	Method
43818	64	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Salinicola rhizosphaerae KCTC 32998
NCBI: GCA_014652715

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.20	no
125439	motility	BacteriaNetⓘ	yes	92.30	no
125439	gram_stain	BacteriaNetⓘ	negative	99.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	95.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Salinicola rhizosphaerae KCTC 32998
NCBI: GCA_014652715.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.47	yes
125438	anaerobic	anaerobicⓘ	no	98.57	yes
125438	aerobic	aerobicⓘ	yes	85.36	no
125438	spore-forming	spore-formingⓘ	no	87.84	no
125438	thermophilic	thermophileⓘ	no	98.50	no
125438	flagellated	motile2+ⓘ	yes	78.14	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Salinicola rhizosphaerae sp. nov., isolated from the rhizosphere of the mangrove Avicennia marina L.	Raju K, Sekar J, Vaiyapuri Ramalingam P	Int J Syst Evol Microbiol	10.1099/ijsem.0.000837	2015

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43818	Kathiravan Raju, Jegan Sekar, Prabavathy Vaiyapuri Ramalingam: Salinicola rhizosphaerae sp. nov., isolated from the rhizosphere of the mangrove Avicennia marina L.. IJSEM 66: 1074 - 1079 2016 ( DOI 10.1099/ijsem.0.000837 , PubMed 26652293 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Salinicola rhizosphaerae (KCTC 32998, NBRC 110222, MSSRFH1)

Name and taxonomic classification