Massilia violacea (CECT 8897, LMG 28941, CAVIO)

Name: Massilia violacea (CECT 8897, LMG 28941, CAVIO)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140929

Type strain

Strain Designation CAVIO

Culture col. no. CECT 8897 LMG 28941 CAVIO

NCBI tax ID(s) 1715466

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Massilia violacea CAVIO is an aerobe, Gram-negative, motile prokaryote that forms circular colonies and was isolated from A soil sample collected from the riverbank of Zahuapan River at Las Cascadas de Atlihuetzia.

Gram-negative motile rod-shaped colony-forming aerobe genome sequence 16S sequence

Name and taxonomic classification

SI-ID 396407

LMG 28941,CECT 8897

@ref 20215

Last LPSN update 2025-12-16 10:03:43

Domain Pseudomonadati

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Oxalobacteraceae

Genus Massilia

Species Massilia violacea

Full scientific name Massilia violacea Embarcadero-Jiménez et al. 2016

Synonyms (1)

Pseudoduganella violacea

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Flagellum arrangement	Confidence
43801	negative	2-2.6 µm	0.5-0.7 µm	rod-shaped	polar
125438	negative					98
125439	negative					98.4

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
43801	2-5 mm	Pale violet	circular	2 days	R2A agar

Culture and growth conditions

Culture medium

@ref	Name	Growth
43801	Reasoner's 2A agar (R2A)

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
43801	positive	growth	10-35
43801	positive	optimum	28	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
43801	positive	optimum	8
43801	positive	growth	5.8-9.2	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
43801	aerobe
125439	obligate aerobe	91.6

Spore formation

@ref	Spore formation	Confidence
43801
125439		98

Halophily

@ref	Halophily level	Salt	Growth	Tested relation	Concentration
43801		NaCl	positive	growth	0-1 %(w/v)
43801	non-halophilic	NaCl	positive	optimum	0 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43801	16651 ChEBI	(S)-lactate	+	respiration
43801	64552 ChEBI	2-hydroxybutyrate	-	respiration
43801	16763 ChEBI	2-oxobutanoate	-	respiration
43801	30916 ChEBI	2-oxoglutarate	+	respiration
43801	73918 ChEBI	3-O-methyl-D-glucose	-	respiration
43801	18101 ChEBI	4-hydroxyphenylacetic acid	-	respiration
43801	30089 ChEBI	acetate	+/-	respiration
43801	13705 ChEBI	acetoacetate	-	respiration
43801	36219 ChEBI	alpha-lactose	-	respiration
43801	8295 ChEBI	beta-hydroxybutyrate	+	respiration
43801	73706 ChEBI	bromosuccinate	+	respiration
43801	85146 ChEBI	carboxymethylcellulose	-	hydrolysis
43801	17057 ChEBI	cellobiose	+	respiration
43801	16947 ChEBI	citrate	+/-	respiration
43801	18333 ChEBI	D-arabitol	-	respiration
43801	29990 ChEBI	D-aspartate	+	respiration
43801	15824 ChEBI	D-fructose	-	respiration
43801	78697 ChEBI	D-fructose 6-phosphate	+	respiration
43801	28847 ChEBI	D-fucose	-	respiration
43801	15895 ChEBI	D-galactonic acid lactone	-	respiration
43801	12936 ChEBI	D-galactose	-	respiration
43801	18024 ChEBI	D-galacturonic acid	-	respiration
43801	8391 ChEBI	D-gluconate	-	respiration
43801	17634 ChEBI	D-glucose	+	assimilation
43801	14314 ChEBI	D-glucose 6-phosphate	+	respiration
43801	15748 ChEBI	D-glucuronate	-	respiration
43801	15588 ChEBI	D-malate	-	respiration
43801	16899 ChEBI	D-mannitol	-	assimilation
43801	16899 ChEBI	D-mannitol	-	respiration
43801	16024 ChEBI	D-mannose	-	assimilation
43801	16024 ChEBI	D-mannose	-	respiration
43801	33801 ChEBI	D-saccharate	-	respiration
43801	16523 ChEBI	D-serine	-	respiration
43801	17924 ChEBI	D-sorbitol	-	respiration
43801	23652 ChEBI	dextrin	+	respiration
43801	4853 ChEBI	esculin	-	hydrolysis
43801	15740 ChEBI	formate	-	respiration
43801	16537 ChEBI	galactarate	-	respiration
43801	16865 ChEBI	gamma-aminobutyric acid	-	respiration
43801	5291 ChEBI	gelatin	-	respiration
43801	28066 ChEBI	gentiobiose	-	respiration
43801	32323 ChEBI	glucuronamide	+/-	respiration
43801	17754 ChEBI	glycerol	-	respiration
43801	70744 ChEBI	glycine-proline	+	respiration
43801	32735 ChEBI	guanidinium chloride	-	growth
43801	17596 ChEBI	inosine	+/-	respiration
43801	16977 ChEBI	L-alanine	-	respiration
43801	16467 ChEBI	L-arginine	-	respiration
43801	29991 ChEBI	L-aspartate	+	respiration
43801	18287 ChEBI	L-fucose	-	respiration
43801	29985 ChEBI	L-glutamate	+	respiration
43801	15971 ChEBI	L-histidine	+	respiration
43801	15589 ChEBI	L-malate	+	assimilation
43801	18183 ChEBI	L-pyroglutamic acid	-	respiration
43801	62345 ChEBI	L-rhamnose	-	respiration
43801	17115 ChEBI	L-serine	-	respiration
43801	48607 ChEBI	lithium chloride	-	growth
43801	17306 ChEBI	maltose	+	respiration
43801	28053 ChEBI	melibiose	-	respiration
43801	74611 ChEBI	methyl (R)-lactate	-	respiration
43801	37657 ChEBI	methyl D-glucoside	-	respiration
43801	51850 ChEBI	methyl pyruvate	+	respiration
43801	17268 ChEBI	myo-inositol	-	respiration
43801	63154 ChEBI	N-acetyl-beta-D-mannosamine	-	respiration
43801	28037 ChEBI	N-acetylgalactosamine	+	respiration
43801	506227 ChEBI	N-acetylglucosamine	-	respiration
43801	35418 ChEBI	n-acetylneuraminate	-	respiration
43801	75273 ChEBI	niaproof	-	growth
43801	17309 ChEBI	pectin	-	respiration
43801	32032 ChEBI	potassium gluconate	-	assimilation
43801	75248 ChEBI	potassium tellurite	-	growth
43801	17272 ChEBI	propionate	+/-	respiration
43801	26490 ChEBI	quinate	-	respiration
43801	16634 ChEBI	raffinose	-	respiration
43801	17814 ChEBI	salicin	-	respiration
43801	75229 ChEBI	sodium bromate	-	growth
43801	64103 ChEBI	sodium butyrate	-	growth
43801	17164 ChEBI	stachyose	-	respiration
43801	28017 ChEBI	starch	-	hydrolysis
43801	17992 ChEBI	sucrose	-	respiration
43801	27082 ChEBI	trehalose	+	respiration
43801	32528 ChEBI	turanose	-	respiration
43801	53423 ChEBI	tween 40	+	respiration
43801	53426 ChEBI	tween 80	+	hydrolysis

Antibiotic resistance

@ref	ChEBI	Metabolite
43801	161680	aztreonam
43801	71321	fusidate
43801	6472	lincomycin
43801	50694	minocycline
43801	100147	nalidixic acid
43801	28077	rifampicin
43801	45735	troleandomycin
43801	28001	vancomycin

Enzymes

@ref	Value	Activity	Ec
43801	catalase	+	1.11.1.6
43801	cytochrome oxidase	+	1.9.3.1

Fatty acid profile

Metadata FA analysis

@ref

43801

Fatty acid	Percentage
C16:1ω7c / C16:1ω6c	42.9
C16:0	32.3
C18:1ω7c / C18:1ω6c	7.7
C10:0 3OH	3.6
C12:0	3.6
C17:0cyclo	2.7
C12:0 2OH	2.1
C17:1 iso ω5c	1.5
C17:0 iso 3OH	1.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#River (Creek)
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
43801	A soil sample collected from the riverbank of Zahuapan River at Las Cascadas de Atlihuetzia	Tlaxcala	Mexico	MEX	North America

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1419187v1 assembly for Pseudoduganella violacea CECT 8897	contig	GCA_014191875	1715466.3	2824303488	1715466	69.11

16S sequences

@ref	Description	Accession	Database
43801	Pseudoduganella violacea 16S ribosomal RNA gene, partial sequence	KT003718

GC content

@ref	GC-content (mol%)	Method
43801	65	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Pseudoduganella violacea CECT 8897
NCBI: GCA_014191875

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.00	no
125439	motility	BacteriaNetⓘ	yes	84.00	no
125439	gram_stain	BacteriaNetⓘ	negative	98.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	91.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Massilia violacea strain CECT 8897
PATRIC: 1715466.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.00	yes
125438	anaerobic	anaerobicⓘ	no	96.60	yes
125438	spore-forming	spore-formingⓘ	no	82.83	yes
125438	aerobic	aerobicⓘ	yes	86.94	yes
125438	thermophilic	thermophileⓘ	no	98.50	yes
125438	flagellated	motile2+ⓘ	yes	89.71	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Massilia violacea sp. nov., isolated from riverbank soil.	Embarcadero-Jimenez S, Peix A, Igual JM, Rivera-Orduna FN, Tao Wang E	Int J Syst Evol Microbiol	10.1099/ijsem.0.000776	2015

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43801	Salvador Embarcadero-Jiménez, Álvaro Peix, José Mariano Igual, Flor N. Rivera-Orduna, En Tao Wang: Massilia violacea sp. nov., isolated from riverbank soil. IJSEM 66: 707 - 711 2016 ( DOI 10.1099/ijsem.0.000776 , PubMed 26611862 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Massilia violacea (CECT 8897, LMG 28941, CAVIO)

Name and taxonomic classification