Name: Marivivens donghaensis AM-4
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 140928

Type strain:

Species: Marivivens donghaensis

Strain Designation: AM-4

Culture col. no.: KCTC 42776, CECT 8947

NCBI tax ID(s): 1699413 (species)

Special Collections

Section

When using BacDive for research please cite our paper

Marivivens donghaensis AM-4 is an aerobe, Gram-negative, pleomorphic-shaped bacterium that forms circular colonies and was isolated from Seawater collected from the East Sea.

colony-forming
Gram-negative
pleomorphic-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	*Roseobacteraceae*
	Genus	*Marivivens*
	Species	**Marivivens donghaensis**
	Full Scientific Name (LPSN)	Marivivens donghaensis Park et al. 2016

Synonym

Aestuarium zhoushanense

Information on morphological and physiological properties Morphology

[Ref.: #43800]	Gram stain	negative
[Ref.: #125438]	Gram stain	negative Confidence in %97.333

[Ref.: #43800]	Cell length	0.2-10 µm

[Ref.: #43800]	Cell width	0.2-0.6 µm

[Ref.: #43800]	Cell shape	pleomorphic-shaped

[Ref.: #43800]	Motility	no

[Ref.: #43800]	Colony size	1.5-3 mm
[Ref.: #43800]	Colony color	Greyish-yellow
[Ref.: #43800]	Colony shape	circular
[Ref.: #43800]	Incubation period	5 days
[Ref.: #43800]	Cultivation medium used	MA agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43800]

Culture medium

Marine agar (MA)

[Ref.: #43800]

Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #43800]			growth	10-40 °C
[Ref.: #43800]			optimum	30-35 °C

	pH	Kind of pH		pH
[Ref.: #43800]			optimum	7-8
[Ref.: #43800]			growth	6.5-8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43800]

Oxygen tolerance

aerobe

[Ref.: #125438]

Ability of spore formation

no Confidence in %91.013

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43800]		NaCl		growth	0-6	%(w/v)
[Ref.: #43800]		NaCl		optimum	1-3	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43800]	acetate ChEBI	+	carbon source
[Ref.: #43800]	acetate ChEBI	+	energy source
[Ref.: #43800]	benzoate ChEBI	-	carbon source
[Ref.: #43800]	benzoate ChEBI	-	energy source
[Ref.: #43800]	casein	-	hydrolysis
[Ref.: #43800]	cellobiose ChEBI	+	carbon source
[Ref.: #43800]	cellobiose ChEBI	+	energy source
[Ref.: #43800]	citrate ChEBI	+/-	carbon source
[Ref.: #43800]	citrate ChEBI	+/-	energy source
[Ref.: #43800]	D-fructose ChEBI	+	carbon source
[Ref.: #43800]	D-fructose ChEBI	+	energy source
[Ref.: #43800]	D-galactose ChEBI	+	carbon source
[Ref.: #43800]	D-galactose ChEBI	+	energy source
[Ref.: #43800]	D-glucose ChEBI	+	carbon source
[Ref.: #43800]	D-glucose ChEBI	+	energy source
[Ref.: #43800]	D-mannose ChEBI	+	carbon source
[Ref.: #43800]	D-mannose ChEBI	+	energy source
[Ref.: #43800]	D-xylose ChEBI	+	carbon source
[Ref.: #43800]	D-xylose ChEBI	+	energy source
[Ref.: #43800]	esculin ChEBI	+	hydrolysis
[Ref.: #43800]	formate ChEBI	-	carbon source
[Ref.: #43800]	formate ChEBI	-	energy source
[Ref.: #43800]	gelatin ChEBI	-	hydrolysis
[Ref.: #43800]	hypoxanthine ChEBI	+	hydrolysis
[Ref.: #43800]	L-arabinose ChEBI	-	carbon source
[Ref.: #43800]	L-arabinose ChEBI	-	energy source
[Ref.: #43800]	L-glutamate ChEBI	-	carbon source
[Ref.: #43800]	L-glutamate ChEBI	-	energy source
[Ref.: #43800]	L-tyrosine ChEBI	+/-	hydrolysis
[Ref.: #43800]	magnesium(2+) ChEBI	-	required for growth
[Ref.: #43800]	maltose ChEBI	-	carbon source
[Ref.: #43800]	maltose ChEBI	-	energy source
[Ref.: #43800]	nitrate ChEBI	+	reduction
[Ref.: #43800]	pyruvate ChEBI	+	carbon source
[Ref.: #43800]	pyruvate ChEBI	+	energy source
[Ref.: #43800]	salicin ChEBI	+	carbon source
[Ref.: #43800]	salicin ChEBI	+	energy source
[Ref.: #43800]	starch ChEBI	-	hydrolysis
[Ref.: #43800]	succinate ChEBI	+/-	carbon source
[Ref.: #43800]	succinate ChEBI	+/-	energy source
[Ref.: #43800]	sucrose ChEBI	+	carbon source
[Ref.: #43800]	sucrose ChEBI	+	energy source
[Ref.: #43800]	trehalose ChEBI	-	carbon source
[Ref.: #43800]	trehalose ChEBI	-	energy source
[Ref.: #43800]	tween 80 ChEBI	-	hydrolysis
[Ref.: #43800]	urea ChEBI	-	hydrolysis
[Ref.: #43800]	xanthine ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #43800]	ampicillin ChEBI	yes	10	µg (disc)
[Ref.: #43800]	carbenicillin ChEBI	yes	100	µg (disc)
[Ref.: #43800]	cephalothin ChEBI	yes	30	µg (disc)
[Ref.: #43800]	chloramphenicol ChEBI	yes	100	µg (disc)
[Ref.: #43800]	gentamicin ChEBI				yes	30	µg (disc)
[Ref.: #43800]	kanamycin ChEBI	yes	30	µg (disc)
[Ref.: #43800]	lincomycin ChEBI				yes	15	µg (disc)
[Ref.: #43800]	neomycin ChEBI	yes	30	µg (disc)
[Ref.: #43800]	novobiocin ChEBI	yes	5	µg (disc)
[Ref.: #43800]	oleandomycin ChEBI	yes	15	µg (disc)
[Ref.: #43800]	penicillin g ChEBI	yes	20	Unit (disc)
[Ref.: #43800]	polymyxin b ChEBI				yes	100	Unit (disc)
[Ref.: #43800]	streptomycin ChEBI	yes	50	µg (disc)
[Ref.: #43800]	tetracycline ChEBI	yes	30	µg (disc)
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #43800]	acid phosphatase	+	3.1.3.2
[Ref.: #43800]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43800]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43800]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43800]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43800]	alpha-glucosidase	-	3.2.1.20
[Ref.: #43800]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43800]	beta-galactosidase	-	3.2.1.23
[Ref.: #43800]	beta-glucosidase	-	3.2.1.21
[Ref.: #43800]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43800]	catalase	+	1.11.1.6
[Ref.: #43800]	cystine arylamidase	-	3.4.11.3
[Ref.: #43800]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43800]	esterase (C 4)	+
[Ref.: #43800]	esterase Lipase (C 8)	+
[Ref.: #43800]	leucine arylamidase	+	3.4.11.1
[Ref.: #43800]	lipase (C 14)	-
[Ref.: #43800]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #43800]	naphthol-AS-BI-phosphohydrolase	-
[Ref.: #43800]	trypsin	-	3.4.21.4
[Ref.: #43800]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43800]

Fatty acid	Percentage
C18:1ω7c	61.4
C16:0	12.7
C16:1ω7c / C16:1ω6c	8.8
11-methyl C18:1ω7c	8
C10:0 3OH	6.1
C18:0	1.9

Metadata FA analysis

Reference

[Ref.: #43800]

Fatty acid	Percentage
C18:1ω7c	61.4
C16:0	12.8
C16:1ω7c / C16:1ω6c	8.5
11-methyl C18:1ω7c	8.3
C10:0 3OH	6.3
C18:0	1.9

Metadata FA analysis

Reference

[Ref.: #43800]

Fatty acid	Percentage
C18:1ω7c	56.4
C16:0	14
11-methyl C18:1ω7c	9.1
C10:0 3OH	9
C16:1ω7c / C16:1ω6c	7.8
C18:0	2

Metadata FA analysis

Reference

[Ref.: #43800]

Fatty acid	Percentage
C18:1ω7c	55.3
C16:0	15.7
C10:0 3OH	10.4
11-methyl C18:1ω7c	9.3
C16:1ω7c / C16:1ω6c	5.9
C18:0	2

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43800]	Sample type/isolated from	Seawater collected from the East Sea
[Ref.: #43800]	Geographic location (country and/or sea, region)	East Sea
[Ref.: #43800]	Country	Republic of Korea
[Ref.: #43800]	Country ISO 3 Code	KOR
[Ref.: #43800]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KT282004 (>99% sequence identity) for Rhodobacteraceae from Microbeatlas

Aquatic Samples	15058
Soil Samples	929
Animal Samples	2317
Plant Samples	164
Total Samples	18468

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43800]	Marivivens donghaensis strain AM-4 16S ribosomal RNA gene, partial sequence	KT282004		GenBank ENA

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Marivivens donghaensis KCTC 42776	GCA_023541015	contig	GenBank ENA	1699413 tax ID	*

[Ref.: #43800]

GC-content

57.2 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Marivivens donghaensis KCTC 42776 NCBI: GCA_023541015.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	97.333	yes
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	94.005	yes
[Ref.: #125438]	aerobic	aerobicⓘ	yes	80.012	yes
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	91.013	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	95.511	no
[Ref.: #125438]	motile2+	flagellatedⓘ	no	65.252	yes

Availability in culture collections External links

[Ref.: #43800]

Culture collection no.

KCTC 42776, CECT 8947

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Marivivens aquimaris sp. nov., isolated from seawater.	Kim JA, Lee B, Kang JY, Song JJ, Choi JH	Arch Microbiol	10.1007/s00203-021-02305-7	2021	*
Phylogeny	Marivivens niveibacter sp. nov., isolated from the seawater of tropical mangrove.	Hu D, Wang L, Lai Q, Sun F, Shao Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.002544	2018	*
Phylogeny	Marivivens donghaensis gen. nov., sp. nov., isolated from seawater.	Park S, Kim S, Jung YT, Yoon JH	Int J Syst Evol Microbiol	10.1099/ijsem.0.000772	2015	*
Phylogeny	Aestuarium zhoushanense is a later heterotypic synonym of Marivivens donghaensis, and transfer of Paradonghicola geojensis to the genus Marivivens as Marivivens geojensis comb. nov.	Qu L, Li Y, Wang W, Shao Z, Gao Z, Lai Q	Int J Syst Evol Microbiol	10.1099/ijsem.0.005564	2022	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43800

Sooyeon Park, Sona Kim, Yong-Taek Jung, Jung-Hoon Yoon: Marivivens donghaensis gen. nov., sp. nov., isolated from seawater. IJSEM 66: 666 - 672 2016 ( DOI 10.1099/ijsem.0.000772 , PubMed 26582231 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

* These data were automatically processed and therefore are not curated

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Marivivens donghaensis KCTC 42776

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