Kocuria arsenatis (HAMBI 3625, LMG 28671, CCBAU 101092)

Name: Kocuria arsenatis (HAMBI 3625, LMG 28671, CCBAU 101092)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140923

Type strain

Strain Designation CM1E1

Culture col. no. HAMBI 3625 LMG 28671 CCBAU 101092 CM1E1

NCBI tax ID(s) 1578757

Special Collections Literature strains

Links

Kocuria arsenatis CM1E1 is an aerobe, Gram-positive, coccus-shaped bacterium that forms circular colonies and was isolated from Lateral root tissue of heavy-metal resistant plants grown on a mine tailing at Villa de la Paz.

Gram-positive coccus-shaped colony-forming aerobe 16S sequence Bacteria

Name and taxonomic classification

SI-ID 271903

LMG 28671

@ref 20215

Last LPSN update 2026-02-09 11:33:45

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Micrococcaceae

Genus Kocuria

Species Kocuria arsenatis

Full scientific name Kocuria arsenatis Román-Ponce et al. 2016

BacDive ID	Other strains from **Kocuria arsenatis** (1)	Type strain
176947	K. arsenatis GK34, DSM 114338

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell shape	Motility
43794	positive	0.2-0.6 µm	coccus-shaped

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
43794	1.5-2.5 mm	Yellow, opaque	circular	2 days	TSA agar

Culture and growth conditions

Culture medium

@ref	Name	Growth
43794	Czapek's agar
43794	ISP 1
43794	ISP 5
43794	LB (Luria-Bertani) MEDIUM
43794	Nutrient agar (NA)
43794	Trypticase Soy Agar (TSA)

Culture temp

@ref	Growth	Type	Temperature (°C)
43794	positive	growth	20-44
43794	positive	optimum	28-37

Culture pH

@ref	Ability	Type	PH	PH range
43794	positive	optimum	6
43794	positive	growth	4-11	alkaliphile

Physiology and metabolism

Oxygen tolerance

43794

Oxygen toleranceaerobe

Spore formation

@ref	Type of spore	Spore formation
43794	endospore

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43794	NaCl	positive	growth	0-10 %(w/v)
43794	NaCl	positive	optimum	1-3 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43794	16651 ChEBI	(S)-lactate	+	carbon source
43794	86537 ChEBI	2,2-dimethylsuccinic acid	+	carbon source
43794	17256 ChEBI	2-deoxyadenosine	+	carbon source
43794	64552 ChEBI	2-hydroxybutyrate	+	carbon source
43794	30916 ChEBI	2-oxoglutarate	+	carbon source
43794	28644 ChEBI	2-oxopentanoate	+	carbon source
43794	18101 ChEBI	4-hydroxyphenylacetic acid	+	carbon source
43794	30089 ChEBI	acetate	+	carbon source
43794	16335 ChEBI	adenosine	+	carbon source
43794	16027 ChEBI	adenosine 5'-monophosphate	+	carbon source
43794	16027 ChEBI	adenosine 5'-monophosphate	+/-	carbon source
43794	40585 ChEBI	alpha-cyclodextrin	+/-	carbon source
43794	17925 ChEBI	alpha-D-glucose	+	carbon source
43794	27613 ChEBI	amygdalin	+/-	carbon source
43794	495055 ChEBI	beta-cyclodextrin	+/-	carbon source
43794	8295 ChEBI	beta-hydroxybutyrate	+	carbon source
43794	16947 ChEBI	citrate	+	assimilation
43794	15570 ChEBI	D-alanine	+	carbon source
43794	15824 ChEBI	D-fructose	+	carbon source
43794	78697 ChEBI	D-fructose 6-phosphate	+	carbon source
43794	8391 ChEBI	D-gluconate	+	carbon source
43794	14314 ChEBI	D-glucose 6-phosphate	+	carbon source
43794	27605 ChEBI	D-psicose	+	carbon source
43794	16443 ChEBI	D-tagatose	+	carbon source
43794	65327 ChEBI	D-xylose	+	carbon source
43794	495056 ChEBI	gamma-cyclodextrin	+	carbon source
43794	29042 ChEBI	glucose 1-phosphate	+/-	carbon source
43794	17754 ChEBI	glycerol	+	carbon source
43794	14336 ChEBI	glycerol 1-phosphate	+	carbon source
43794	28087 ChEBI	glycogen	+	carbon source
43794	17596 ChEBI	inosine	+	carbon source
43794	21217 ChEBI	L-alaninamide	+	carbon source
43794		L-alanine 4-nitroanilide	+	carbon source
43794	73786 ChEBI	L-alanylglycine	+	carbon source
43794	30849 ChEBI	L-arabinose	+	carbon source
43794	17196 ChEBI	L-asparagine	+	carbon source
43794	29985 ChEBI	L-glutamate	+	carbon source
43794	15589 ChEBI	L-malate	+	carbon source
43794	18183 ChEBI	L-pyroglutamic acid	+	carbon source
43794	62345 ChEBI	L-rhamnose	+/-	carbon source
43794	17115 ChEBI	L-serine	+	carbon source
43794	75144 ChEBI	lactamide	+	carbon source
43794	17306 ChEBI	maltose	+	carbon source
43794	61993 ChEBI	maltotriose	+	carbon source
43794	6731 ChEBI	melezitose	+	carbon source
43794	28053 ChEBI	melibiose	+	carbon source
43794	74611 ChEBI	methyl (R)-lactate	+	carbon source
43794	320055 ChEBI	methyl beta-D-glucopyranoside	+/-	carbon source
43794	37657 ChEBI	methyl D-glucoside	+/-	carbon source
43794	51850 ChEBI	methyl pyruvate	+	carbon source
43794	75146 ChEBI	monomethyl succinate	+	carbon source
43794	44337 ChEBI	N-acetyl-L-glutamate	+	carbon source
43794	17632 ChEBI	nitrate	+	reduction
43794	18394 ChEBI	palatinose	+/-	carbon source
43794	17272 ChEBI	propionate	+	carbon source
43794	15361 ChEBI	pyruvate	+	carbon source
43794	33942 ChEBI	ribose	+	carbon source
43794	17814 ChEBI	salicin	+/-	carbon source
43794	26710 ChEBI	sodium chloride	-	required for growth
43794	28017 ChEBI	starch	-	hydrolysis
43794	143136 ChEBI	succinamate	+	carbon source
43794	17992 ChEBI	sucrose	+	carbon source
43794	17748 ChEBI	thymidine	+	carbon source
43794	63528 ChEBI	thymidine 5'-monophosphate	+	carbon source
43794	27082 ChEBI	trehalose	+	carbon source
43794	32528 ChEBI	turanose	+	carbon source
43794	53423 ChEBI	tween 40	+	carbon source
43794	53426 ChEBI	tween 80	+	carbon source
43794	16704 ChEBI	uridine	+	carbon source
43794	16695 ChEBI	uridine 5'-monophosphate	+	carbon source
43794	17151 ChEBI	xylitol	+/-	carbon source

Antibiotic resistance

@ref	ChEBI	Metabolite	Sensitivity conc.	Resistance conc.
43794	17833	gentamicin	10 µg/mL
43794	7507	neomycin		30 µg/mL
43794	17076	streptomycin		10 µg/mL
43794	27902	tetracycline		5 µg/mL

Enzymes

@ref	Value	Activity	Ec
43794	catalase	+	1.11.1.6
43794	urease	+	3.5.1.5

Fatty acid profile

Metadata FA analysis

@ref

43794

Fatty acid	Percentage
C15:0 anteiso	45
C17:0 anteiso	20.5
C15:0 iso	12.5
C16:0 iso	6.1
C16:0	5.8
C18:0	1.8
C17:0 iso	1.6
C17:1ω8c	1.3
C14:0	1.2
C14:0 iso	0.9
C13:0 anteiso	0.6
C16:0 anteiso	0.5
C13:0 iso	0.4
C17:0	0.3
iso-C18:0H	0.3
C19:1ω7c / C19:1ω6c	0.3
C18:1ω9c	0.3
C16:0 iso 3OH	0.2
C18:1ω7c	0.2
C16:1ω7c / C16:1ω6c	0.2
C14:0 3OH / C16:1 iso I	0.1
C12-aldehyde	0.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Other	#Mine
#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Root (Rhizome)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
43794	Lateral root tissue of heavy-metal resistant plants (Prosopis laevigata) grown on a mine tailing at Villa de la Paz	San Luis Potosi	Mexico	MEX	North America	23.683	-100.7 23.683/-100.7

Taxonmaps

69479

Global distribution of 16S sequence KM874399 (>99% sequence identity) for Kocuria from Microbeatlas

Aquatic Samples	947
Soil Samples	468
Animal Samples	9694
Plant Samples	153
Total Samples	11262

Interaction and safety

Sequence information

16S sequences

@ref	Description	Accession	Database
43794	Kocuria arsenatis strain CM1E1 16S ribosomal RNA gene, partial sequence	KM874399

GC content

@ref	GC-content (mol%)	Method
43794	74.5	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Kocuria arsenatis sp. nov., an arsenic-resistant endophytic actinobacterium associated with Prosopis laegivata grown on high-arsenic-polluted mine tailing.	Roman-Ponce B, Wang D, Soledad Vasquez-Murrieta M, Feng Chen W, Estrada-de Los Santos P, Hua Sui X, Tao Wang E	Int J Syst Evol Microbiol	10.1099/ijsem.0.000830	2015

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43794	Brenda Román-Ponce, Dan Wang, María Soledad Vásquez-Murrieta, Wen Feng Chen, Paulina Estrada-de los Santos, Xin Hua Sui, En Tao Wang: Kocuria arsenatis sp. nov., an arsenic-resistant endophytic actinobacterium associated with Prosopis laegivata grown on high-arsenic-polluted mine tailing. IJSEM 66: 1027 - 1033 2016 ( DOI 10.1099/ijsem.0.000830 , PubMed 26647141 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Kocuria arsenatis (HAMBI 3625, LMG 28671, CCBAU 101092)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Antibiotic resistance

Enzymes

Fatty acid profile

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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