Hymenobacter monticola (KCTC 42733, CCTCC AB 2015206, XF-6R)

Name: Hymenobacter monticola (KCTC 42733, CCTCC AB 2015206, XF-6R)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140922

Type strain

Strain Designation XF-6R

Culture col. no. KCTC 42733 CCTCC AB 2015206 XF-6R

NCBI tax ID(s) 1705399

Special Collections KCTC Literature strains

Links

Hymenobacter monticola XF-6R is an aerobe, Gram-negative, rod-shaped prokaryote that forms circular colonies and was isolated from From soil of Huanglong mountain.

Gram-negative rod-shaped colony-forming aerobe genome sequence 16S sequence

Name and taxonomic classification

SI-ID 27422

KCTC 42733

@ref 20215

Last LPSN update 2025-12-16 10:03:43

Domain Pseudomonadati

Phylum Bacteroidota

Class Cytophagia

Order Cytophagales

Family Hymenobacteraceae

Genus Hymenobacter

Species Hymenobacter monticola

Full scientific name Hymenobacter monticola Fan et al. 2016

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape
43792	negative	1.1-2 µm	0.5-0.8 µm	rod-shaped
67771				rod-shaped
67771	negative

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
43792	1-1.5 mm	Red	circular	5 days	R2A agar

Culture and growth conditions

Culture medium

@ref	Name	Growth
43792	Reasoner's 2A agar (R2A)

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
43792	positive	growth	4-30
43792	positive	optimum	25	mesophilic
67771	positive	growth	25	mesophilic

Culture pH

@ref	Ability	Type	PH
43792	positive	optimum	7
43792	positive	growth	6-8

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
43792	aerobe
67771	aerobe

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43792	NaCl	positive	growth	0-0.2 %

Observation

67771

Observationquinones: MK-7

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43792		2-oxogluconate	+	carbon source
43792	16193 ChEBI	3-hydroxybenzoate	-	carbon source
43792	37054 ChEBI	3-hydroxybutyrate	+	carbon source
43792	17879 ChEBI	4-hydroxybenzoate	+	carbon source
43792	58143 ChEBI	5-dehydro-D-gluconate	+	carbon source
43792	30089 ChEBI	acetate	+	carbon source
43792	17128 ChEBI	adipate	+	carbon source
43792		casein	-	hydrolysis
43792	62968 ChEBI	cellulose	-	hydrolysis
43792	16947 ChEBI	citrate	-	carbon source
43792	17634 ChEBI	D-glucose	+	carbon source
43792	16024 ChEBI	D-mannose	+	carbon source
43792	16988 ChEBI	D-ribose	+	carbon source
43792	17924 ChEBI	D-sorbitol	+	carbon source
43792	27689 ChEBI	decanoate	+	carbon source
43792	16991 ChEBI	dna	-	hydrolysis
43792	4853 ChEBI	esculin	+	hydrolysis
43792	33984 ChEBI	fucose	+	carbon source
43792	5291 ChEBI	gelatin	-	hydrolysis
43792	24265 ChEBI	gluconate	+	carbon source
43792	28087 ChEBI	glycogen	-	carbon source
43792	17240 ChEBI	itaconate	-	carbon source
43792	16977 ChEBI	L-alanine	+	carbon source
43792	30849 ChEBI	L-arabinose	+	carbon source
43792	15971 ChEBI	L-histidine	+	carbon source
43792	17203 ChEBI	L-proline	+	carbon source
43792	17115 ChEBI	L-serine	+	carbon source
43792	24996 ChEBI	lactate	+	carbon source
43792	25115 ChEBI	malate	+	carbon source
43792	15792 ChEBI	malonate	-	carbon source
43792	17306 ChEBI	maltose	+	carbon source
43792	29864 ChEBI	mannitol	+	carbon source
43792	28053 ChEBI	melibiose	+	carbon source
43792	17268 ChEBI	myo-inositol	+	carbon source
43792	506227 ChEBI	N-acetylglucosamine	+	carbon source
43792	17632 ChEBI	nitrate	-	reduction
43792	18401 ChEBI	phenylacetate	-	carbon source
43792	17272 ChEBI	propionate	+	carbon source
43792	26546 ChEBI	rhamnose	+	carbon source
43792	17814 ChEBI	salicin	+	carbon source
43792	28017 ChEBI	starch	+	hydrolysis
43792	9300 ChEBI	suberic acid	-	carbon source
43792	17992 ChEBI	sucrose	+	carbon source
43792	53424 ChEBI	tween 20	-	hydrolysis
43792	53423 ChEBI	tween 40	+	hydrolysis
43792	53425 ChEBI	tween 60	+	hydrolysis
43792	53426 ChEBI	tween 80	+	hydrolysis
43792	31011 ChEBI	valerate	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
43792	16136 ChEBI	hydrogen sulfide
43792	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
43792	acid phosphatase	+	3.1.3.2
43792	alkaline phosphatase	+	3.1.3.1
43792	alpha-galactosidase	-	3.2.1.22
43792	alpha-glucosidase	+	3.2.1.20
43792	alpha-mannosidase	-	3.2.1.24
43792	arginine dihydrolase	-	3.5.3.6
43792	beta-D-fucosidase	-	3.2.1.38
43792	beta-galactosidase	+	3.2.1.23
43792	beta-glucosidase	-	3.2.1.21
43792	beta-glucuronidase	-	3.2.1.31
43792	catalase	+	1.11.1.6
43792	chymotrypsin	-	3.4.4.5
43792	cystine arylamidase	+	3.4.11.3
43792	cytochrome oxidase	+	1.9.3.1
43792	esterase (C 4)	+
43792	esterase Lipase (C 8)	+
43792	leucine arylamidase	+	3.4.11.1
43792	lipase (C 14)	-
43792	N-acetyl-beta-glucosaminidase	+	3.2.1.52
43792	naphthol-AS-BI-phosphohydrolase	+
43792	trypsin	-	3.4.21.4
43792	urease	-	3.5.1.5
43792	valine arylamidase	+

Fatty acid profile

Metadata FA analysis

@ref

43792

Fatty acid	Percentage
C16:1ω7c / C16:1ω6c	26.1
C15:0 iso	23.3
C16:1ω5c	14.4
C15:0 anteiso	10.3
C16:0	4.8
C17:1 iso I / C17:1 anteiso B	3.3
C15:0 iso 3OH	2.1
C15:1 iso G	1.8
C16:0 iso	1.8
C17:0 iso 3OH	1.4
C17:0 iso	1.2
C16:0 iso 3OH	1.1
C16:0 3OH	1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Geologic
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
67771	From soil of Huanglong mountain	Huanglong Scenic and Historic Interes Area, Sichuan	China	CHN	Asia
43792	Soil near to a pond on the Huanglong mountain	Sichuan province	China	CHN	Asia	32.729	103.841 32.729/103.841

Taxonmaps

69479

Global distribution of 16S sequence KT454960 (>99% sequence identity) for Hymenobacter monticola subclade from Microbeatlas

Aquatic Samples	45
Soil Samples	77
Animal Samples	68
Plant Samples	34
Total Samples	224

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM4268454v1 assembly for Hymenobacter monticola KCTC 42733	scaffold	GCA_042684545	1705399	58.12

16S sequences

@ref	Description	Accession	Database
43792	Hymenobacter monticola strain XF-6R 16S ribosomal RNA gene, partial sequence	KT454960

GC content

@ref	GC-content (mol%)	Method
43792	62	high performance liquid chromatography (HPLC)
67771	62.0

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Hymenobacter monticola sp. nov., isolated from mountain soil.	Fan X, Wang Q, Zheng S, Shi K, Wang G	Int J Syst Evol Microbiol	10.1099/ijsem.0.000792	2015

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43792	Xia Fan, Qian Wang, Shixue Zheng, Kaixiang Shi, Gejiao Wang: Hymenobacter monticola sp. nov., isolated from mountain soil. IJSEM 66: 812 - 816 2016 ( DOI 10.1099/ijsem.0.000792 , PubMed 26612316 )
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Hymenobacter monticola (KCTC 42733, CCTCC AB 2015206, XF-6R)

Name and taxonomic classification