Name: Hymenobacter monticola XF-6R
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140922

Type strain:

Species: Hymenobacter monticola

Strain Designation: XF-6R

Culture col. no.: KCTC 42733, CCTCC AB 2015206

Strain history: <- Xia Fan, Huzhong Agricultural Univ.

NCBI tax ID(s): 1705399 (species)

Section

Hymenobacter monticola XF-6R is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from From soil of Huanglong mountain.

colony-forming
Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Hymenobacteraceae*
	Genus	*Hymenobacter*
	Species	**Hymenobacter monticola**
	Full Scientific Name (LPSN)	Hymenobacter monticola Fan et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43792]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #43792]	Cell length	1.1-2 µm

[Ref.: #43792]	Cell width	0.5-0.8 µm

[Ref.: #43792]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #43792]	Motility	no
[Ref.: #67771]	Motility	no

[Ref.: #43792]	Colony size	1-1.5 mm
[Ref.: #43792]	Colony color	Red
[Ref.: #43792]	Colony shape	circular
[Ref.: #43792]	Incubation period	5 days
[Ref.: #43792]	Cultivation medium used	R2A agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43792]

Culture medium

Reasoner's 2A agar (R2A)

[Ref.: #43792]

Culture medium growth

		Temperature
[Ref.: #43792]	growth	4-30 °C
[Ref.: #43792]	optimum	25 °C
[Ref.: #67771]	growth	25 °C

[Ref.: #43792]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43792]			optimum	7
[Ref.: #43792]			growth	6-8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43792]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43792]		NaCl		growth	0-0.2	%

[Ref.: #67771]

Observation

quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43792]	2-oxogluconate	+	carbon source
[Ref.: #43792]	3-hydroxybenzoate ChEBI	-	carbon source
[Ref.: #43792]	3-hydroxybutyrate ChEBI	+	carbon source
[Ref.: #43792]	4-hydroxybenzoate ChEBI	+	carbon source
[Ref.: #43792]	5-dehydro-D-gluconate ChEBI	+	carbon source
[Ref.: #43792]	acetate ChEBI	+	carbon source
[Ref.: #43792]	adipate ChEBI	+	carbon source
[Ref.: #43792]	casein	-	hydrolysis
[Ref.: #43792]	cellulose ChEBI	-	hydrolysis
[Ref.: #43792]	citrate ChEBI	-	carbon source
[Ref.: #43792]	D-glucose ChEBI	+	carbon source
[Ref.: #43792]	D-mannose ChEBI	+	carbon source
[Ref.: #43792]	D-ribose ChEBI	+	carbon source
[Ref.: #43792]	D-sorbitol ChEBI	+	carbon source
[Ref.: #43792]	decanoate ChEBI	+	carbon source
[Ref.: #43792]	dna ChEBI	-	hydrolysis
[Ref.: #43792]	esculin ChEBI	+	hydrolysis
[Ref.: #43792]	fucose ChEBI	+	carbon source
[Ref.: #43792]	gelatin ChEBI	-	hydrolysis
[Ref.: #43792]	gluconate ChEBI	+	carbon source
[Ref.: #43792]	glycogen ChEBI	-	carbon source
[Ref.: #43792]	itaconate ChEBI	-	carbon source
[Ref.: #43792]	L-alanine ChEBI	+	carbon source
[Ref.: #43792]	L-arabinose ChEBI	+	carbon source
[Ref.: #43792]	L-histidine ChEBI	+	carbon source
[Ref.: #43792]	L-proline ChEBI	+	carbon source
[Ref.: #43792]	L-serine ChEBI	+	carbon source
[Ref.: #43792]	lactate ChEBI	+	carbon source
[Ref.: #43792]	malate ChEBI	+	carbon source
[Ref.: #43792]	malonate ChEBI	-	carbon source
[Ref.: #43792]	maltose ChEBI	+	carbon source
[Ref.: #43792]	mannitol ChEBI	+	carbon source
[Ref.: #43792]	melibiose ChEBI	+	carbon source
[Ref.: #43792]	myo-inositol ChEBI	+	carbon source
[Ref.: #43792]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #43792]	nitrate ChEBI	-	reduction
[Ref.: #43792]	phenylacetate ChEBI	-	carbon source
[Ref.: #43792]	propionate ChEBI	+	carbon source
[Ref.: #43792]	rhamnose ChEBI	+	carbon source
[Ref.: #43792]	salicin ChEBI	+	carbon source
[Ref.: #43792]	starch ChEBI	+	hydrolysis
[Ref.: #43792]	suberic acid ChEBI	-	carbon source
[Ref.: #43792]	sucrose ChEBI	+	carbon source
[Ref.: #43792]	tween 20 ChEBI	-	hydrolysis
[Ref.: #43792]	tween 40 ChEBI	+	hydrolysis
[Ref.: #43792]	tween 60 ChEBI	+	hydrolysis
[Ref.: #43792]	tween 80 ChEBI	+	hydrolysis
[Ref.: #43792]	valerate ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43792]		hydrogen sulfide ChEBI	no
[Ref.: #43792]		indole ChEBI	yes

	Enzyme	Enzyme activity	EC number
[Ref.: #43792]	acid phosphatase	+	3.1.3.2
[Ref.: #43792]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43792]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43792]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43792]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43792]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43792]	beta-D-fucosidase	-	3.2.1.38
[Ref.: #43792]	beta-galactosidase	+	3.2.1.23
[Ref.: #43792]	beta-glucosidase	-	3.2.1.21
[Ref.: #43792]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43792]	catalase	+	1.11.1.6
[Ref.: #43792]	chymotrypsin	-	3.4.4.5
[Ref.: #43792]	cystine arylamidase	+	3.4.11.3
[Ref.: #43792]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43792]	esterase (C 4)	+
[Ref.: #43792]	esterase Lipase (C 8)	+
[Ref.: #43792]	leucine arylamidase	+	3.4.11.1
[Ref.: #43792]	lipase (C 14)	-
[Ref.: #43792]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #43792]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43792]	trypsin	-	3.4.21.4
[Ref.: #43792]	urease	-	3.5.1.5
[Ref.: #43792]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43792]

Fatty acid	Percentage
C16:1ω7c / C16:1ω6c	26.1
C15:0 iso	23.3
C16:1ω5c	14.4
C15:0 anteiso	10.3
C16:0	4.8
C17:1 iso I / C17:1 anteiso B	3.3
C15:0 iso 3OH	2.1
C15:1 iso G	1.8
C16:0 iso	1.8
C17:0 iso 3OH	1.4
C17:0 iso	1.2
C16:0 iso 3OH	1.1
C16:0 3OH	1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67771]	Sample type/isolated from	From soil of Huanglong mountain
[Ref.: #67771]	Geographic location (country and/or sea, region)	Huanglong Scenic and Historic Interes Area, Sichuan
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia

[Ref.: #43792]	Sample type/isolated from	Soil near to a pond on the Huanglong mountain
[Ref.: #43792]	Geographic location (country and/or sea, region)	Sichuan province
[Ref.: #43792]	Country	China
[Ref.: #43792]	Country ISO 3 Code	CHN
[Ref.: #43792]	Continent	Asia
[Ref.: #43792]	Geographic location	32.7290°/103.8410°
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Geologic
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KT454960 (>99% sequence identity) for Hymenobacter monticola subclade from Microbeatlas

Aquatic Samples	45
Soil Samples	77
Animal Samples	68
Plant Samples	34
Total Samples	224

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43792]	16S rRNA gene sequence	KT454960		GenBank

[Ref.: #43792]	GC-content	62 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67771]	GC-content	62.0 mol%

Availability in culture collections External links

[Ref.: #43792]

Culture collection no.

KCTC 42733, CCTCC AB 2015206

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Hymenobacter monticola sp. nov., isolated from mountain soil.	Fan X, Wang Q, Zheng S, Shi K, Wang G	Int J Syst Evol Microbiol	10.1099/ijsem.0.000792	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43792

Xia Fan, Qian Wang, Shixue Zheng, Kaixiang Shi, Gejiao Wang: Hymenobacter monticola sp. nov., isolated from mountain soil. IJSEM 66: 812 - 816 2016 ( DOI 10.1099/ijsem.0.000792 , PubMed 26612316 )

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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