Name: Halomonas garicola JJ-M1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 140921

Type strain:

Species: Halomonas garicola

Strain Designation: JJ-M1

Culture col. no.: KACC 18117, JCM 30151

Strain history: C. O. Jeon; Chung-Ang Univ., South Korea; JJ-M1.

NCBI tax ID(s): 1690008 (species)

Special Collections

Section

Halomonas garicola JJ-M1 is a facultative aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from Saeu-jeot, a Korean salted and fermented shrimp sauce; sample obtained after 81 days of fermentation.

colony-forming
Gram-negative
rod-shaped
facultative aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Halomonadaceae*
	Genus	*Halomonas*
	Species	**Halomonas garicola**
	Full Scientific Name (LPSN)	Halomonas garicola Jung et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43791]	Gram stain	negative

[Ref.: #43791]	Cell length	1.2-2.2 µm

[Ref.: #43791]	Cell width	0.8-1.1 µm

[Ref.: #43791]	Cell shape	rod-shaped

[Ref.: #43791]	Motility	no

[Ref.: #43791]	Colony size	1.5-3.5 mm
[Ref.: #43791]	Colony color	Pale yellow
[Ref.: #43791]	Colony shape	circular
[Ref.: #43791]	Incubation period	3 days
[Ref.: #43791]	Cultivation medium used	10 % MH agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43791]

Culture medium

10 % MH agar

[Ref.: #43791]

Culture medium growth

[Ref.: #43791]

Culture medium

MacConkey agar

[Ref.: #43791]

Culture medium growth

		Temperature
[Ref.: #43791]	growth	20-37 °C
[Ref.: #43791]	optimum	30 °C
[Ref.: #67770]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #43791]			optimum	7
[Ref.: #43791]			growth	5.5-9.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43791]

Oxygen tolerance

facultative aerobe

[Ref.: #43791]

Halophily / tolerance level

moderately halophilic

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43791]		NaCl		growth	3-22.5	%(w/v)
[Ref.: #43791]		NaCl		optimum	10	%(w/v)

[Ref.: #67770]

Observation

quinones: Q-9

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43791]	casein	-	hydrolysis
[Ref.: #43791]	D-alanine ChEBI	-	carbon source
[Ref.: #43791]	D-alanine ChEBI	-	energy source
[Ref.: #43791]	D-alanine ChEBI	-	nitrogen source
[Ref.: #43791]	D-fructose ChEBI	-	builds acid from
[Ref.: #43791]	D-fructose ChEBI	-	carbon source
[Ref.: #43791]	D-fructose ChEBI	-	energy source
[Ref.: #43791]	D-galactose ChEBI	-	builds acid from
[Ref.: #43791]	D-galactose ChEBI	-	carbon source
[Ref.: #43791]	D-galactose ChEBI	-	energy source
[Ref.: #43791]	D-glucose ChEBI	-	builds acid from
[Ref.: #43791]	D-glucose ChEBI	-	carbon source
[Ref.: #43791]	D-glucose ChEBI	-	energy source
[Ref.: #43791]	D-glucose ChEBI	-	fermentation
[Ref.: #43791]	D-glucose ChEBI	-	oxidation
[Ref.: #43791]	D-mannitol ChEBI	-	builds acid from
[Ref.: #43791]	D-mannitol ChEBI	-	carbon source
[Ref.: #43791]	D-mannitol ChEBI	-	energy source
[Ref.: #43791]	D-mannose ChEBI	-	builds acid from
[Ref.: #43791]	D-mannose ChEBI	-	carbon source
[Ref.: #43791]	D-mannose ChEBI	-	energy source
[Ref.: #43791]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #43791]	D-sorbitol ChEBI	-	carbon source
[Ref.: #43791]	D-sorbitol ChEBI	-	energy source
[Ref.: #43791]	dna ChEBI	-	hydrolysis
[Ref.: #43791]	esculin ChEBI	-	hydrolysis
[Ref.: #43791]	fumarate ChEBI	-	respiration
[Ref.: #43791]	gelatin ChEBI	-	hydrolysis
[Ref.: #43791]	gluconate ChEBI	-	oxidation
[Ref.: #43791]	glucose ChEBI	-	fermentation
[Ref.: #43791]	indole ChEBI	-	hydrolysis
[Ref.: #43791]	L-arabinose ChEBI	-	carbon source
[Ref.: #43791]	L-arabinose ChEBI	-	energy source
[Ref.: #43791]	L-histidine ChEBI	+	carbon source
[Ref.: #43791]	L-histidine ChEBI	+	energy source
[Ref.: #43791]	L-histidine ChEBI	+	nitrogen source
[Ref.: #43791]	L-lysine ChEBI	-	carbon source
[Ref.: #43791]	L-lysine ChEBI	-	energy source
[Ref.: #43791]	L-lysine ChEBI	-	nitrogen source
[Ref.: #43791]	L-methionine ChEBI	-	carbon source
[Ref.: #43791]	L-methionine ChEBI	-	energy source
[Ref.: #43791]	L-methionine ChEBI	-	nitrogen source
[Ref.: #43791]	L-valine ChEBI	-	carbon source
[Ref.: #43791]	L-valine ChEBI	-	energy source
[Ref.: #43791]	L-valine ChEBI	-	nitrogen source
[Ref.: #43791]	lactose ChEBI	-	builds acid from
[Ref.: #43791]	lactose ChEBI	-	carbon source
[Ref.: #43791]	lactose ChEBI	-	energy source
[Ref.: #43791]	maltose ChEBI	-	builds acid from
[Ref.: #43791]	maltose ChEBI	-	carbon source
[Ref.: #43791]	maltose ChEBI	-	energy source
[Ref.: #43791]	myo-inositol ChEBI	-	carbon source
[Ref.: #43791]	myo-inositol ChEBI	-	energy source
[Ref.: #43791]	nitrate ChEBI	+	reduction
[Ref.: #43791]	nitrate ChEBI	+	respiration
[Ref.: #43791]	nitrite ChEBI	-	respiration
[Ref.: #43791]	starch ChEBI	-	hydrolysis
[Ref.: #43791]	sucrose ChEBI	-	builds acid from
[Ref.: #43791]	sucrose ChEBI	-	carbon source
[Ref.: #43791]	sucrose ChEBI	-	energy source
[Ref.: #43791]	trehalose ChEBI	-	builds acid from
[Ref.: #43791]	trehalose ChEBI	-	carbon source
[Ref.: #43791]	trehalose ChEBI	-	energy source
[Ref.: #43791]	tween 20 ChEBI	-	hydrolysis
[Ref.: #43791]	tween 80 ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #43791]	ampicillin ChEBI	yes	10	µg (disc)
[Ref.: #43791]	carbenicillin ChEBI	yes	100	µg (disc)
[Ref.: #43791]	gentamicin ChEBI	yes	30	µg (disc)
[Ref.: #43791]	kanamycin ChEBI				yes	30	µg (disc)
[Ref.: #43791]	lincomycin ChEBI				yes	15	µg (disc)
[Ref.: #43791]	neomycin ChEBI				yes	30	µg (disc)
[Ref.: #43791]	novobiocin ChEBI	yes	5	µg (disc)
[Ref.: #43791]	oleandomycin ChEBI				yes	15	µg (disc)
[Ref.: #43791]	tetracycline ChEBI				yes	30	µg (disc)

	Metabolite	Production
[Ref.: #43791]	acetoin ChEBI	yes
[Ref.: #43791]	hydrogen sulfide ChEBI	yes
[Ref.: #43791]	indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #43791]		acetoin ChEBI	+
[Ref.: #43791]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #43791]	acid phosphatase	+	3.1.3.2
[Ref.: #43791]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43791]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43791]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43791]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43791]	alpha-glucosidase	-	3.2.1.20
[Ref.: #43791]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43791]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43791]	beta-galactosidase	-	3.2.1.23
[Ref.: #43791]	beta-glucosidase	-	3.2.1.21
[Ref.: #43791]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43791]	catalase	+	1.11.1.6
[Ref.: #43791]	cystine arylamidase	-	3.4.11.3
[Ref.: #43791]	cytochrome oxidase	-	1.9.3.1
[Ref.: #43791]	esterase (C 4)	+
[Ref.: #43791]	esterase Lipase (C 8)	+
[Ref.: #43791]	leucine arylamidase	+	3.4.11.1
[Ref.: #43791]	lipase (C 14)	+
[Ref.: #43791]	lysine decarboxylase	-	4.1.1.18
[Ref.: #43791]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #43791]	naphthol-AS-BI-phosphohydrolase	-
[Ref.: #43791]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #43791]	phenylalanine deaminase	-	4.3.1.5
[Ref.: #43791]	trypsin	-	3.4.21.4
[Ref.: #43791]	urease	-	3.5.1.5
[Ref.: #43791]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43791]	Sample type/isolated from	Saeu-jeot, a Korean salted and fermented shrimp sauce; sample obtained after 81 days of fermentation

[Ref.: #67770]	Sample type/isolated from	Traditional Korean fermented shrimp sauce (saeu-jeot)
* marker position based on {}

Isolation sources categories

#Condition	#Saline	-
#Engineered	#Food production	#Seafood
#Engineered	#Food production	#Fermented

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KR024741 (>99% sequence identity) for Halomonas garicola subclade from Microbeatlas

Aquatic Samples	1
Soil Samples	1
Animal Samples
Plant Samples	6
Total Samples	8

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43791]	Halomonas garicola strain JJ-M1 16S ribosomal RNA gene, partial sequence	KR024741		GenBank ENA

[Ref.: #43791]	GC-content	62.4 mol%	Thermal denaturation, fluorometry
[Ref.: #67770]	GC-content	62.4 mol%	thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #43791]

Culture collection no.

KACC 18117, JCM 30151

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halomonas garicola sp. nov., isolated from saeu-jeot, a Korean salted and fermented shrimp sauce.	Jung WY, Lee HJ, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijsem.0.000784	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43791

Woo Yong Jung, Hyo Jung Lee, Che Ok Jeon: Halomonas garicola sp. nov., isolated from saeu-jeot, a Korean salted and fermented shrimp sauce. IJSEM 66: 731 - 737 2016 ( DOI 10.1099/ijsem.0.000784 , PubMed 26597224 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Halomonas garicola in external resources:
SILVA
BRENDA
PANGAEA
GBIF