Halomonas garicola (KACC 18117, JCM 30151, JJ-M1)

Name: Halomonas garicola (KACC 18117, JCM 30151, JJ-M1)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140921

Type strain

Strain Designation JJ-M1

Culture col. no. KACC 18117 JCM 30151 JJ-M1

NCBI tax ID(s) 1690008

Special Collections JCM Literature strains

History C. O. Jeon; Chung-Ang Univ., South Korea; JJ-M1.

Links

Halomonas garicola JJ-M1 is a facultative aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from Saeu-jeot, a Korean salted and fermented shrimp sauce; sample obtained after 81 days of fermentation.

Gram-negative rod-shaped colony-forming facultative aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 132865

JCM 30151

@ref 20215

Last LPSN update 2026-02-09 11:33:45

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Oceanospirillales

Family Halomonadaceae

Genus Halomonas

Species Halomonas garicola

Full scientific name Halomonas garicola Jung et al. 2016

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
43791	negative	1.2-2.2 µm	0.8-1.1 µm	rod-shaped

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
43791	1.5-3.5 mm	Pale yellow	circular	3 days	10 % MH agar

Culture and growth conditions

Culture medium

@ref	Name	Growth
43791	10 % MH agar
43791	MacConkey agar

Culture temp

@ref	Growth	Type	Temperature (°C)
43791	positive	growth	20-37
43791	positive	optimum	30
67770	positive	growth	30

Culture pH

@ref	Ability	Type	PH	PH range
43791	positive	optimum	7
43791	positive	growth	5.5-9.5	alkaliphile

Physiology and metabolism

Oxygen tolerance

43791

Oxygen tolerancefacultative aerobe

Halophily

@ref	Halophily level	Salt	Growth	Tested relation	Concentration
43791		NaCl	positive	growth	3-22.5 %(w/v)
43791	moderately halophilic	NaCl	positive	optimum	10 %(w/v)

Observation

67770

Observationquinones: Q-9

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43791		casein	-	hydrolysis
43791	15570 ChEBI	D-alanine	-	carbon source
43791	15570 ChEBI	D-alanine	-	energy source
43791	15570 ChEBI	D-alanine	-	nitrogen source
43791	15824 ChEBI	D-fructose	-	builds acid from
43791	15824 ChEBI	D-fructose	-	carbon source
43791	15824 ChEBI	D-fructose	-	energy source
43791	12936 ChEBI	D-galactose	-	builds acid from
43791	12936 ChEBI	D-galactose	-	carbon source
43791	12936 ChEBI	D-galactose	-	energy source
43791	17634 ChEBI	D-glucose	-	builds acid from
43791	17634 ChEBI	D-glucose	-	carbon source
43791	17634 ChEBI	D-glucose	-	energy source
43791	17634 ChEBI	D-glucose	-	fermentation
43791	17634 ChEBI	D-glucose	-	oxidation
43791	16899 ChEBI	D-mannitol	-	builds acid from
43791	16899 ChEBI	D-mannitol	-	carbon source
43791	16899 ChEBI	D-mannitol	-	energy source
43791	16024 ChEBI	D-mannose	-	builds acid from
43791	16024 ChEBI	D-mannose	-	carbon source
43791	16024 ChEBI	D-mannose	-	energy source
43791	17924 ChEBI	D-sorbitol	-	builds acid from
43791	17924 ChEBI	D-sorbitol	-	carbon source
43791	17924 ChEBI	D-sorbitol	-	energy source
43791	16991 ChEBI	dna	-	hydrolysis
43791	4853 ChEBI	esculin	-	hydrolysis
43791	29806 ChEBI	fumarate	-	respiration
43791	5291 ChEBI	gelatin	-	hydrolysis
43791	24265 ChEBI	gluconate	-	oxidation
43791	17234 ChEBI	glucose	-	fermentation
43791	35581 ChEBI	indole	-	hydrolysis
43791	30849 ChEBI	L-arabinose	-	carbon source
43791	30849 ChEBI	L-arabinose	-	energy source
43791	15971 ChEBI	L-histidine	+	carbon source
43791	15971 ChEBI	L-histidine	+	energy source
43791	15971 ChEBI	L-histidine	+	nitrogen source
43791	18019 ChEBI	L-lysine	-	carbon source
43791	18019 ChEBI	L-lysine	-	energy source
43791	18019 ChEBI	L-lysine	-	nitrogen source
43791	16643 ChEBI	L-methionine	-	carbon source
43791	16643 ChEBI	L-methionine	-	energy source
43791	16643 ChEBI	L-methionine	-	nitrogen source
43791	16414 ChEBI	L-valine	-	carbon source
43791	16414 ChEBI	L-valine	-	energy source
43791	16414 ChEBI	L-valine	-	nitrogen source
43791	17716 ChEBI	lactose	-	builds acid from
43791	17716 ChEBI	lactose	-	carbon source
43791	17716 ChEBI	lactose	-	energy source
43791	17306 ChEBI	maltose	-	builds acid from
43791	17306 ChEBI	maltose	-	carbon source
43791	17306 ChEBI	maltose	-	energy source
43791	17268 ChEBI	myo-inositol	-	carbon source
43791	17268 ChEBI	myo-inositol	-	energy source
43791	17632 ChEBI	nitrate	+	reduction
43791	17632 ChEBI	nitrate	+	respiration
43791	16301 ChEBI	nitrite	-	respiration
43791	28017 ChEBI	starch	-	hydrolysis
43791	17992 ChEBI	sucrose	-	builds acid from
43791	17992 ChEBI	sucrose	-	carbon source
43791	17992 ChEBI	sucrose	-	energy source
43791	27082 ChEBI	trehalose	-	builds acid from
43791	27082 ChEBI	trehalose	-	carbon source
43791	27082 ChEBI	trehalose	-	energy source
43791	53424 ChEBI	tween 20	-	hydrolysis
43791	53426 ChEBI	tween 80	-	hydrolysis

Antibiotic resistance

@ref	ChEBI	Metabolite	Sensitivity conc.	Resistance conc.
43791	28971	ampicillin	10 µg (disc)
43791	3393	carbenicillin	100 µg (disc)
43791	17833	gentamicin	30 µg (disc)
43791	6104	kanamycin		30 µg (disc)
43791	6472	lincomycin		15 µg (disc)
43791	7507	neomycin		30 µg (disc)
43791	28368	novobiocin	5 µg (disc)
43791	16869	oleandomycin		15 µg (disc)
43791	27902	tetracycline		30 µg (disc)

Metabolite production

@ref	Chebi-ID	Metabolite
43791	15688 ChEBI	acetoin
43791	16136 ChEBI	hydrogen sulfide
43791	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
43791	15688 ChEBI	acetoin	+
43791	17234 ChEBI	glucose		-

Enzymes

@ref	Value	Activity	Ec
43791	acid phosphatase	+	3.1.3.2
43791	alkaline phosphatase	+	3.1.3.1
43791	alpha-chymotrypsin	-	3.4.21.1
43791	alpha-fucosidase	-	3.2.1.51
43791	alpha-galactosidase	-	3.2.1.22
43791	alpha-glucosidase	-	3.2.1.20
43791	alpha-mannosidase	-	3.2.1.24
43791	arginine dihydrolase	-	3.5.3.6
43791	beta-galactosidase	-	3.2.1.23
43791	beta-glucosidase	-	3.2.1.21
43791	beta-glucuronidase	-	3.2.1.31
43791	catalase	+	1.11.1.6
43791	cystine arylamidase	-	3.4.11.3
43791	cytochrome oxidase	-	1.9.3.1
43791	esterase (C 4)	+
43791	esterase Lipase (C 8)	+
43791	leucine arylamidase	+	3.4.11.1
43791	lipase (C 14)	+
43791	lysine decarboxylase	-	4.1.1.18
43791	N-acetyl-beta-glucosaminidase	-	3.2.1.52
43791	naphthol-AS-BI-phosphohydrolase	-
43791	ornithine decarboxylase	-	4.1.1.17
43791	phenylalanine deaminase	-	4.3.1.5
43791	trypsin	-	3.4.21.4
43791	urease	-	3.5.1.5
43791	valine arylamidase	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Condition	#Saline	-
#Engineered	#Food production	#Seafood
#Engineered	#Food production	#Fermented

Isolation

@ref	Sample type
43791	Saeu-jeot, a Korean salted and fermented shrimp sauce; sample obtained after 81 days of fermentation
67770	Traditional Korean fermented shrimp sauce (saeu-jeot)

Taxonmaps

69479

Global distribution of 16S sequence KR024741 (>99% sequence identity) for Halomonas garicola subclade from Microbeatlas

Aquatic Samples	1
Soil Samples	1
Animal Samples
Plant Samples	6
Total Samples	8

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
124043	ASM3193571v1 assembly for Halomonas garicola KACC 18117	scaffold	GCA_031935715	1690008.5	1690008	62.55

16S sequences

@ref	Description	Accession	Database
43791	Halomonas garicola strain JJ-M1 16S ribosomal RNA gene, partial sequence	KR024741

GC content

@ref	GC-content (mol%)	Method
43791	62.4	Thermal denaturation, fluorometry
67770	62.4	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
	Genomic attributes and characterization of novel exopolysaccharide-producing bacterium Halomonas piscis sp. nov. isolated from jeotgal.	Kim B, Yang AI, Joe HI, Kim KH, Choe H, Joe SH, Jun MO, Shin NR.	Front Microbiol	10.3389/fmicb.2023.1303039	2023
Phylogeny	Halomonas garicola sp. nov., isolated from saeu-jeot, a Korean salted and fermented shrimp sauce.	Jung WY, Lee HJ, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijsem.0.000784	2015

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43791	Woo Yong Jung, Hyo Jung Lee, Che Ok Jeon: Halomonas garicola sp. nov., isolated from saeu-jeot, a Korean salted and fermented shrimp sauce. IJSEM 66: 731 - 737 2016 ( DOI 10.1099/ijsem.0.000784 , PubMed 26597224 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Halomonas garicola (KACC 18117, JCM 30151, JJ-M1)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Halophily

Observation

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_031935715

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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