Name: Halomonas garicola JJ-M1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140921

Type strain:

Species: Halomonas garicola

Strain Designation: JJ-M1

Culture col. no.: KACC 18117, JCM 30151

Strain history: C. O. Jeon; Chung-Ang Univ., South Korea; JJ-M1.

NCBI tax ID(s): 1690008 (species)

Section

Halomonas garicola JJ-M1 is a facultative aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from Saeu-jeot, a Korean salted and fermented shrimp sauce; sample obtained after 81 days of fermentation.

colony-forming
Gram-negative
rod-shaped
facultative aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Halomonadaceae*
	Genus	*Halomonas*
	Species	**Halomonas garicola**
	Full Scientific Name (LPSN)	Halomonas garicola Jung et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43791]	Gram stain	negative

[Ref.: #43791]	Cell length	1.2-2.2 µm

[Ref.: #43791]	Cell width	0.8-1.1 µm

[Ref.: #43791]	Cell shape	rod-shaped

[Ref.: #43791]	Motility	no

[Ref.: #43791]	Colony size	1.5-3.5 mm
[Ref.: #43791]	Colony color	Pale yellow
[Ref.: #43791]	Colony shape	circular
[Ref.: #43791]	Incubation period	3 days
[Ref.: #43791]	Cultivation medium used	10 % MH agar

Information on culture and growth conditions Culture and growth conditions

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Culture medium

10 % MH agar

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Culture medium growth

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Culture medium

MacConkey agar

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Culture medium growth

		Temperature
[Ref.: #43791]	growth	20-37 °C
[Ref.: #43791]	optimum	30 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #43791]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43791]			optimum	7
[Ref.: #43791]			growth	5.5-9.5

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

facultative aerobe

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Halophily / tolerance level

moderately halophilic

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43791]		NaCl		growth	3-22.5	%(w/v)
[Ref.: #43791]		NaCl		optimum	10	%(w/v)

[Ref.: #67770]

Observation

quinones: Q-9

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43791]	casein	-	hydrolysis
[Ref.: #43791]	D-alanine ChEBI	-	carbon source
[Ref.: #43791]	D-alanine ChEBI	-	energy source
[Ref.: #43791]	D-alanine ChEBI	-	nitrogen source
[Ref.: #43791]	D-fructose ChEBI	-	builds acid from
[Ref.: #43791]	D-fructose ChEBI	-	carbon source
[Ref.: #43791]	D-fructose ChEBI	-	energy source
[Ref.: #43791]	D-galactose ChEBI	-	builds acid from
[Ref.: #43791]	D-galactose ChEBI	-	carbon source
[Ref.: #43791]	D-galactose ChEBI	-	energy source
[Ref.: #43791]	D-glucose ChEBI	-	builds acid from
[Ref.: #43791]	D-glucose ChEBI	-	carbon source
[Ref.: #43791]	D-glucose ChEBI	-	energy source
[Ref.: #43791]	D-glucose ChEBI	-	fermentation
[Ref.: #43791]	D-glucose ChEBI	-	oxidation
[Ref.: #43791]	D-mannitol ChEBI	-	builds acid from
[Ref.: #43791]	D-mannitol ChEBI	-	carbon source
[Ref.: #43791]	D-mannitol ChEBI	-	energy source
[Ref.: #43791]	D-mannose ChEBI	-	builds acid from
[Ref.: #43791]	D-mannose ChEBI	-	carbon source
[Ref.: #43791]	D-mannose ChEBI	-	energy source
[Ref.: #43791]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #43791]	D-sorbitol ChEBI	-	carbon source
[Ref.: #43791]	D-sorbitol ChEBI	-	energy source
[Ref.: #43791]	dna ChEBI	-	hydrolysis
[Ref.: #43791]	esculin ChEBI	-	hydrolysis
[Ref.: #43791]	fumarate ChEBI	-	respiration
[Ref.: #43791]	gelatin ChEBI	-	hydrolysis
[Ref.: #43791]	gluconate ChEBI	-	oxidation
[Ref.: #43791]	glucose ChEBI	-	fermentation
[Ref.: #43791]	indole ChEBI	-	hydrolysis
[Ref.: #43791]	L-arabinose ChEBI	-	carbon source
[Ref.: #43791]	L-arabinose ChEBI	-	energy source
[Ref.: #43791]	L-histidine ChEBI	+	carbon source
[Ref.: #43791]	L-histidine ChEBI	+	energy source
[Ref.: #43791]	L-histidine ChEBI	+	nitrogen source
[Ref.: #43791]	L-lysine ChEBI	-	carbon source
[Ref.: #43791]	L-lysine ChEBI	-	energy source
[Ref.: #43791]	L-lysine ChEBI	-	nitrogen source
[Ref.: #43791]	L-methionine ChEBI	-	carbon source
[Ref.: #43791]	L-methionine ChEBI	-	energy source
[Ref.: #43791]	L-methionine ChEBI	-	nitrogen source
[Ref.: #43791]	L-valine ChEBI	-	carbon source
[Ref.: #43791]	L-valine ChEBI	-	energy source
[Ref.: #43791]	L-valine ChEBI	-	nitrogen source
[Ref.: #43791]	lactose ChEBI	-	builds acid from
[Ref.: #43791]	lactose ChEBI	-	carbon source
[Ref.: #43791]	lactose ChEBI	-	energy source
[Ref.: #43791]	maltose ChEBI	-	builds acid from
[Ref.: #43791]	maltose ChEBI	-	carbon source
[Ref.: #43791]	maltose ChEBI	-	energy source
[Ref.: #43791]	myo-inositol ChEBI	-	carbon source
[Ref.: #43791]	myo-inositol ChEBI	-	energy source
[Ref.: #43791]	nitrate ChEBI	+	reduction
[Ref.: #43791]	nitrate ChEBI	+	respiration
[Ref.: #43791]	nitrite ChEBI	-	respiration
[Ref.: #43791]	starch ChEBI	-	hydrolysis
[Ref.: #43791]	sucrose ChEBI	-	builds acid from
[Ref.: #43791]	sucrose ChEBI	-	carbon source
[Ref.: #43791]	sucrose ChEBI	-	energy source
[Ref.: #43791]	trehalose ChEBI	-	builds acid from
[Ref.: #43791]	trehalose ChEBI	-	carbon source
[Ref.: #43791]	trehalose ChEBI	-	energy source
[Ref.: #43791]	tween 20 ChEBI	-	hydrolysis
[Ref.: #43791]	tween 80 ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #43791]	ampicillin ChEBI	yes	10	µg (disc)
[Ref.: #43791]	carbenicillin ChEBI	yes	100	µg (disc)
[Ref.: #43791]	gentamicin ChEBI	yes	30	µg (disc)
[Ref.: #43791]	kanamycin ChEBI				yes	30	µg (disc)
[Ref.: #43791]	lincomycin ChEBI				yes	15	µg (disc)
[Ref.: #43791]	neomycin ChEBI				yes	30	µg (disc)
[Ref.: #43791]	novobiocin ChEBI	yes	5	µg (disc)
[Ref.: #43791]	oleandomycin ChEBI				yes	15	µg (disc)
[Ref.: #43791]	tetracycline ChEBI				yes	30	µg (disc)

	Metabolite	Production
[Ref.: #43791]	acetoin ChEBI	yes
[Ref.: #43791]	hydrogen sulfide ChEBI	yes
[Ref.: #43791]	indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #43791]		acetoin ChEBI	+
[Ref.: #43791]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #43791]	acid phosphatase	+	3.1.3.2
[Ref.: #43791]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43791]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43791]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43791]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43791]	alpha-glucosidase	-	3.2.1.20
[Ref.: #43791]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43791]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43791]	beta-galactosidase	-	3.2.1.23
[Ref.: #43791]	beta-glucosidase	-	3.2.1.21
[Ref.: #43791]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43791]	catalase	+	1.11.1.6
[Ref.: #43791]	cystine arylamidase	-	3.4.11.3
[Ref.: #43791]	cytochrome oxidase	-	1.9.3.1
[Ref.: #43791]	esterase (C 4)	+
[Ref.: #43791]	esterase Lipase (C 8)	+
[Ref.: #43791]	leucine arylamidase	+	3.4.11.1
[Ref.: #43791]	lipase (C 14)	+
[Ref.: #43791]	lysine decarboxylase	-	4.1.1.18
[Ref.: #43791]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #43791]	naphthol-AS-BI-phosphohydrolase	-
[Ref.: #43791]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #43791]	phenylalanine deaminase	-	4.3.1.5
[Ref.: #43791]	trypsin	-	3.4.21.4
[Ref.: #43791]	urease	-	3.5.1.5
[Ref.: #43791]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43791]	Sample type/isolated from	Saeu-jeot, a Korean salted and fermented shrimp sauce; sample obtained after 81 days of fermentation

[Ref.: #67770]	Sample type/isolated from	Traditional Korean fermented shrimp sauce (saeu-jeot)
* marker position based on {}

Isolation sources categories

#Condition	#Saline	-
#Engineered	#Food production	#Seafood
#Engineered	#Food production	#Fermented

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KR024741 (>99% sequence identity) for Halomonas garicola subclade from Microbeatlas

Aquatic Samples	1
Soil Samples	1
Animal Samples
Plant Samples	6
Total Samples	8

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43791]	16S rRNA gene sequence	KR024741		GenBank

[Ref.: #43791]	GC-content	62.4 mol%	Thermal denaturation, fluorometry
[Ref.: #67770]	GC-content	62.4 mol%	thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #43791]

Culture collection no.

KACC 18117, JCM 30151

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halomonas garicola sp. nov., isolated from saeu-jeot, a Korean salted and fermented shrimp sauce.	Jung WY, Lee HJ, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijsem.0.000784	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43791

Woo Yong Jung, Hyo Jung Lee, Che Ok Jeon: Halomonas garicola sp. nov., isolated from saeu-jeot, a Korean salted and fermented shrimp sauce. IJSEM 66: 731 - 737 2016 ( DOI 10.1099/ijsem.0.000784 , PubMed 26597224 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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