Name: Glaciimonas frigoris N1.38
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 140920

Type strain:

Species: Glaciimonas frigoris

Strain Designation: N1.38

Culture col. no.: LMG 28868, CCOS 838

NCBI tax ID(s): 1245754 (species)

SI-ID 396478

LMG 28868

Special Collections

Literature strains

Section

When using BacDive for research please cite our paper

Glaciimonas frigoris N1.38 is an aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from Sediment collected from ancient permafrost.

colony-forming
Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Oxalobacteraceae*
	Genus	*Glaciimonas*
	Species	**Glaciimonas frigoris**
	Full Scientific Name (LPSN)	Glaciimonas frigoris Margesin et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43789]	Gram stain	negative

[Ref.: #43789]	Cell length	1.3-2.3 µm

[Ref.: #43789]	Cell width	0.6-0.8 µm

[Ref.: #43789]	Cell shape	rod-shaped

[Ref.: #43789]	Motility	yes

[Ref.: #43789]	Flagellum arrangement	gliding

[Ref.: #43789]	Colony color	Creamy white, glossy
[Ref.: #43789]	Colony shape	circular
[Ref.: #43789]	Cultivation medium used	R2A agar

Information on culture and growth conditions Culture and growth conditions

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Culture medium

Reasoner's 2A agar (R2A)

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Culture medium growth

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Culture medium

Nutrient agar (NA)

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Culture medium growth

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Culture medium

Trypticase Soy Agar (TSA)

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Culture medium growth

	Kind of temperature		Temperature
[Ref.: #43789]		growth	1-25 °C
[Ref.: #43789]		growth	-5 °C
[Ref.: #43789]	negative	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #43789]			growth	6-8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43789]	Oxygen tolerance	aerobe
[Ref.: #43789]	Oxygen tolerance	microaerophile

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43789]		NaCl		growth	0-1	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43789]	adipate ChEBI	-	assimilation
[Ref.: #43789]	anthracene ChEBI	-	carbon source
[Ref.: #43789]	carboxymethylcellulose ChEBI	-	degradation
[Ref.: #43789]	citrate ChEBI	-	assimilation
[Ref.: #43789]	D-mannitol ChEBI	+	assimilation
[Ref.: #43789]	D-mannose ChEBI	-	assimilation
[Ref.: #43789]	decanoate ChEBI	-	assimilation
[Ref.: #43789]	esculin ChEBI	-	hydrolysis
[Ref.: #43789]	gelatin ChEBI	-	hydrolysis
[Ref.: #43789]	glucose ChEBI	-	fermentation
[Ref.: #43789]	glucose ChEBI	+	assimilation
[Ref.: #43789]	hexadecane ChEBI	-	carbon source
[Ref.: #43789]	L-arabinose ChEBI	-	assimilation
[Ref.: #43789]	lignin ChEBI	-	degradation
[Ref.: #43789]	malate ChEBI	+/-	assimilation
[Ref.: #43789]	maltose ChEBI	-	assimilation
[Ref.: #43789]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #43789]	nitrate ChEBI	+	reduction
[Ref.: #43789]	phenanthrene ChEBI	-	carbon source
[Ref.: #43789]	phenol ChEBI	-	carbon source
[Ref.: #43789]	phenylacetate ChEBI	-	assimilation
[Ref.: #43789]	potassium gluconate ChEBI	-	assimilation
[Ref.: #43789]	skimmed milk	-	degradation
[Ref.: #43789]	sodium citrate ChEBI	-	assimilation
[Ref.: #43789]	starch ChEBI	-	degradation
[Ref.: #43789]	tryptophan ChEBI	-	energy source
[Ref.: #43789]	tween 80 ChEBI	-	degradation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43789]		hydrogen sulfide ChEBI	no
[Ref.: #43789]		indole ChEBI	no

	Physiological tests	Metabolite	Indole test
[Ref.: #43789]		indole ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #43789]	acid phosphatase	+/-	3.1.3.2
[Ref.: #43789]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43789]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43789]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43789]	alpha-glucosidase	-	3.2.1.20
[Ref.: #43789]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43789]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43789]	beta-galactosidase	-	3.2.1.23
[Ref.: #43789]	beta-glucosidase	-	3.2.1.21
[Ref.: #43789]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43789]	catalase	+	1.11.1.6
[Ref.: #43789]	cystine arylamidase	-	3.4.11.3
[Ref.: #43789]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43789]	esterase (C 4)	+
[Ref.: #43789]	esterase Lipase (C 8)	+
[Ref.: #43789]	leucine arylamidase	+	3.4.11.1
[Ref.: #43789]	lipase (C 14)	-
[Ref.: #43789]	lysine decarboxylase	-	4.1.1.18
[Ref.: #43789]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #43789]	naphthol-AS-BI-phosphohydrolase	+/-
[Ref.: #43789]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #43789]	trypsin	-	3.4.21.4
[Ref.: #43789]	tryptophan deaminase	-	4.1.99.1
[Ref.: #43789]	urease	-	3.5.1.5
[Ref.: #43789]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43789]	Sample type/isolated from	Sediment collected from ancient permafrost
[Ref.: #43789]	Geographic location (country and/or sea, region)	Siberia
[Ref.: #43789]	Country	Russia
[Ref.: #43789]	Country ISO 3 Code	RUS
[Ref.: #43789]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Permafrost
#Environmental	#Terrestrial	#Sediment

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43789]	Glaciimonas frigoris strain N1-38 16S ribosomal RNA gene, partial sequence	JX545209		GenBank ENA

[Ref.: #43789]

GC-content

53 mol%

thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #43789]

Culture collection no.

LMG 28868, CCOS 838

[Ref.: #96813]

SI-ID 396478

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Glaciimonas frigoris sp. nov., a psychrophilic bacterium isolated from ancient Siberian permafrost sediment, and emended description of the genus Glaciimonas.	Margesin R, Zhang DC, Frasson D, Brouchkov A	Int J Syst Evol Microbiol	10.1099/ijsem.0.000783	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43789

Rosa Margesin, De-Chao Zhang, David Frasson, Anatoli Brouchkov: Glaciimonas frigoris sp. nov., a psychrophilic bacterium isolated from ancient Siberian permafrost sediment, and emended description of the genus Glaciimonas. IJSEM 66: 744 - 748 2016 ( DOI 10.1099/ijsem.0.000783 , PubMed 26597157 )

#96813

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID396478.1 )

* These data were automatically processed and therefore are not curated

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