Name: Comamonas piscis KACC 18403
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140915

Type strain:

Species: Comamonas piscis

Culture col. no.: KACC 18403, JCM 30718, CN 1

Strain history: J.-W. Bae; Dept. of Biol., Kyung Hee Univ., South Korea; CN1.

NCBI tax ID(s): 1562974 (species)

Section

Comamonas piscis KACC 18403 is an obligate aerobe, Gram-negative, coccus-shaped bacterium that forms circular colonies and was isolated from The intestine of a Korean rockfish, Sebastes schlegelii.

coccus-shaped
colony-forming
Gram-negative
obligate aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Comamonadaceae*
	Genus	*Comamonas*
	Species	**Comamonas piscis**
	Full Scientific Name (PNU)	Comamonas piscis Kang et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43781]	Gram stain	negative
[Ref.: #43781]	Cell length	0.6-0.7 µm
[Ref.: #43781]	Cell shape	coccus-shaped
[Ref.: #43781]	Motility	no

[Ref.: #43781]	Colony color	Translucent, pale yellow
[Ref.: #43781]	Colony shape	circular
[Ref.: #43781]	Incubation period	2 days
[Ref.: #43781]	Cultivation medium used	Nutrient agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43781]

Culture medium

Nutrient agar (NA)

[Ref.: #43781]

Culture medium growth

		Temperature
[Ref.: #43781]	growth	10-30 °C
[Ref.: #43781]	optimum	25 °C
[Ref.: #67770]	growth	25 °C

[Ref.: #43781]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH	pH range
[Ref.: #43781]			optimum	7
[Ref.: #43781]			growth	6-10	alkaliphile

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43781]

Oxygen tolerance

obligate aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43781]		NaCl		growth	0-3	%(w/v)
[Ref.: #43781]		NaCl		optimum	0-1	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43781]	2-hydroxybutyrate ChEBI	+	assimilation
[Ref.: #43781]	2-oxobutanoate ChEBI	+	assimilation
[Ref.: #43781]	2-oxoglutarate ChEBI	+	assimilation
[Ref.: #43781]	2-oxopentanoate ChEBI	+	assimilation
[Ref.: #43781]	4-hydroxybutyrate ChEBI	+	assimilation
[Ref.: #43781]	acetate ChEBI	+	assimilation
[Ref.: #43781]	adipate ChEBI	+	assimilation
[Ref.: #43781]	beta-hydroxybutyrate ChEBI	+	assimilation
[Ref.: #43781]	bromosuccinate ChEBI	+	assimilation
[Ref.: #43781]	cis-aconitate ChEBI	-	assimilation
[Ref.: #43781]	citrate ChEBI	-	assimilation
[Ref.: #43781]	D-alanine ChEBI	+	assimilation
[Ref.: #43781]	ethanolamine ChEBI	-	assimilation
[Ref.: #43781]	formate ChEBI	-	assimilation
[Ref.: #43781]	glycogen ChEBI	+	assimilation
[Ref.: #43781]	glycyl-l-glutamate ChEBI	+	assimilation
[Ref.: #43781]	hydroxyproline ChEBI	-	assimilation
[Ref.: #43781]	L-alanine 4-nitroanilide	-	assimilation
[Ref.: #43781]	L-asparagine ChEBI	+	assimilation
[Ref.: #43781]	L-aspartate ChEBI	+	assimilation
[Ref.: #43781]	L-glutamate ChEBI	+	assimilation
[Ref.: #43781]	L-leucine ChEBI	+	assimilation
[Ref.: #43781]	L-proline ChEBI	+	assimilation
[Ref.: #43781]	L-pyroglutamic acid ChEBI	+	assimilation
[Ref.: #43781]	L-serine ChEBI	+	assimilation
[Ref.: #43781]	L-threonine ChEBI	+	assimilation
[Ref.: #43781]	lactate ChEBI	+	assimilation
[Ref.: #43781]	malate ChEBI	+	assimilation
[Ref.: #43781]	methyl pyruvate ChEBI	+	assimilation
[Ref.: #43781]	monomethyl succinate ChEBI	+	assimilation
[Ref.: #43781]	nitrate ChEBI	+	reduction
[Ref.: #43781]	propionate ChEBI	+	assimilation
[Ref.: #43781]	sebacic acid ChEBI	+	assimilation
[Ref.: #43781]	succinamate ChEBI	+	assimilation
[Ref.: #43781]	succinate ChEBI	+	assimilation
[Ref.: #43781]	tween 40 ChEBI	-	assimilation
[Ref.: #43781]	tween 80 ChEBI	-	assimilation
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #43781]	acid phosphatase	+	3.1.3.2
[Ref.: #43781]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43781]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43781]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43781]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43781]	alpha-glucuronidase	-	3.2.1.139
[Ref.: #43781]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43781]	beta-galactosidase	-	3.2.1.23
[Ref.: #43781]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43781]	catalase	+	1.11.1.6
[Ref.: #43781]	cystine arylamidase	-	3.4.11.3
[Ref.: #43781]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43781]	esterase (C 4)	+
[Ref.: #43781]	esterase Lipase (C 8)	+
[Ref.: #43781]	leucine arylamidase	+	3.4.11.1
[Ref.: #43781]	lipase (C 14)	-
[Ref.: #43781]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #43781]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43781]	trypsin	-	3.4.21.4
[Ref.: #43781]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43781]	Sample type/isolated from	The intestine of a Korean rockfish, Sebastes schlegelii

[Ref.: #67770]	Sample type/isolated from	Intestine of a Korean rockfish, Sebastes schlegelii
[Ref.: #67770]	Host species	Sebastes schlegelii
* marker position based on {}

Isolation sources categories

#Host	#Fishes	-
#Host Body-Site	#Gastrointestinal tract	-

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43781]	16S rRNA gene sequence	KM263565		GenBank

[Ref.: #43781]	GC-content	65.5 mol%	Thermal denaturation, fluorometry
[Ref.: #67770]	GC-content	65.5 mol%	thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #43781]

Culture collection no.

KACC 18403, JCM 30718, CN 1

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Comamonas piscis sp. nov., isolated from the intestine of a Korean rockfish, Sebastes schlegelii.	Kang W, Soo Kim P, Hyun DW, Lee JY, Sik Kim H, Joon Oh S, Shin NR, Bae JW	Int J Syst Evol Microbiol	10.1099/ijsem.0.000790	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43781

Woorim Kang, Pil Soo Kim, Dong-Wook Hyun, June-Young Lee, Hyun Sik Kim, Sei Joon Oh, Na-Ri Shin, Jin-Woo Bae: Comamonas piscis sp. nov., isolated from the intestine of a Korean rockfish, Sebastes schlegelii. IJSEM 66: 780 - 785 2016 ( DOI 10.1099/ijsem.0.000790 , PubMed 26612039 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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