Name: Pseudomonas populi KBL-4-9
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140904

Type strain:

Species: Pseudomonas populi

Strain Designation: KBL-4-9

Culture col. no.: JCM 19138, CCTCC AB 2013069, NRRL B-59988

NCBI tax ID(s): 1500966 (species)

Section

Pseudomonas populi KBL-4-9 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from Populus euphratica sample at the ancient Khiyik River.

colony-forming
Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pseudomonadales*
	Family	*Pseudomonadaceae*
	Genus	*Pseudomonas*
	Species	**Pseudomonas populi**
	Full Scientific Name (LPSN)	Pseudomonas populi Anwar et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43748]	Gram stain	negative

[Ref.: #43748]	Cell length	0.5-1.6 µm

[Ref.: #43748]	Cell width	0.5-0.6 µm

[Ref.: #43748]	Cell shape	rod-shaped

[Ref.: #43748]	Motility	no

[Ref.: #43748]	Colony size	1-1.5 mm
[Ref.: #43748]	Colony color	Creamy
[Ref.: #43748]	Colony shape	circular
[Ref.: #43748]	Incubation period	3 days
[Ref.: #43748]	Cultivation medium used	Luria Bertani agar

Information on culture and growth conditions Culture and growth conditions

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Culture medium

LB (Luria-Bertani) MEDIUM

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Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #43748]			growth	4-45 °C
[Ref.: #43748]			optimum	37 °C

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Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #43748]			optimum	7.5
[Ref.: #43748]			growth	5.5-9.5

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43748]		NaCl		growth	1-3	%(w/v)
[Ref.: #43748]		NaCl		optimum	1	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43748]	(S)-lactate ChEBI	+	respiration
[Ref.: #43748]	2-oxoglutarate ChEBI	+	respiration
[Ref.: #43748]	acetate ChEBI	+	respiration
[Ref.: #43748]	acetoacetate ChEBI	+	respiration
[Ref.: #43748]	adipate ChEBI	+	assimilation
[Ref.: #43748]	alginate ChEBI	-	hydrolysis
[Ref.: #43748]	bromosuccinate ChEBI	+	respiration
[Ref.: #43748]	butyrate ChEBI	-	respiration
[Ref.: #43748]	casein	-	hydrolysis
[Ref.: #43748]	cellobiose ChEBI	-	respiration
[Ref.: #43748]	citrate ChEBI	+	respiration
[Ref.: #43748]	D-arabitol ChEBI	-	respiration
[Ref.: #43748]	D-aspartate ChEBI	-	respiration
[Ref.: #43748]	D-fructose ChEBI	+	respiration
[Ref.: #43748]	D-fucose ChEBI	+	respiration
[Ref.: #43748]	D-galactonic acid lactone ChEBI	+	respiration
[Ref.: #43748]	D-galactose ChEBI	-	respiration
[Ref.: #43748]	D-galacturonic acid ChEBI	+	respiration
[Ref.: #43748]	D-gluconate ChEBI	+	respiration
[Ref.: #43748]	D-glucose ChEBI	-	assimilation
[Ref.: #43748]	D-glucuronate ChEBI	+	respiration
[Ref.: #43748]	D-mannitol ChEBI	-	assimilation
[Ref.: #43748]	D-mannitol ChEBI	-	respiration
[Ref.: #43748]	D-mannose ChEBI	-	assimilation
[Ref.: #43748]	D-mannose ChEBI	-	respiration
[Ref.: #43748]	D-saccharate ChEBI	+	respiration
[Ref.: #43748]	D-serine ChEBI	-	respiration
[Ref.: #43748]	D-sorbitol ChEBI	-	respiration
[Ref.: #43748]	decanoate ChEBI	+	assimilation
[Ref.: #43748]	dextrin ChEBI	-	respiration
[Ref.: #43748]	dna ChEBI	-	hydrolysis
[Ref.: #43748]	esculin ChEBI	-	hydrolysis
[Ref.: #43748]	formate ChEBI	+	respiration
[Ref.: #43748]	fusidate ChEBI	-	respiration
[Ref.: #43748]	galactarate ChEBI	+	respiration
[Ref.: #43748]	gamma-aminobutyric acid ChEBI	+	respiration
[Ref.: #43748]	gelatin ChEBI	-	hydrolysis
[Ref.: #43748]	gentiobiose ChEBI	-	respiration
[Ref.: #43748]	glucose ChEBI	-	fermentation
[Ref.: #43748]	glucuronamide ChEBI	+	respiration
[Ref.: #43748]	glycerol ChEBI	-	respiration
[Ref.: #43748]	glycine-proline ChEBI	+	respiration
[Ref.: #43748]	L-alanine ChEBI	+	respiration
[Ref.: #43748]	L-arabinose ChEBI	-	assimilation
[Ref.: #43748]	L-arginine ChEBI	+	respiration
[Ref.: #43748]	L-aspartate ChEBI	+	respiration
[Ref.: #43748]	L-fucose ChEBI	-	respiration
[Ref.: #43748]	L-glutamate ChEBI	+	respiration
[Ref.: #43748]	L-histidine ChEBI	+	respiration
[Ref.: #43748]	L-malate ChEBI	+	respiration
[Ref.: #43748]	L-pyroglutamic acid ChEBI	+	respiration
[Ref.: #43748]	L-rhamnose ChEBI	-	respiration
[Ref.: #43748]	L-serine ChEBI	+	respiration
[Ref.: #43748]	lithium chloride ChEBI	-	assimilation
[Ref.: #43748]	malate ChEBI	-	assimilation
[Ref.: #43748]	maltose ChEBI	-	assimilation
[Ref.: #43748]	maltose ChEBI	-	respiration
[Ref.: #43748]	melibiose ChEBI	-	respiration
[Ref.: #43748]	methyl (R)-lactate ChEBI	-	respiration
[Ref.: #43748]	methyl pyruvate ChEBI	+	respiration
[Ref.: #43748]	minocycline ChEBI	+	assimilation
[Ref.: #43748]	myo-inositol ChEBI	-	respiration
[Ref.: #43748]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #43748]	pectin ChEBI	+	respiration
[Ref.: #43748]	phenylacetate ChEBI	-	assimilation
[Ref.: #43748]	potassium gluconate ChEBI	-	assimilation
[Ref.: #43748]	potassium nitrate ChEBI	+	assimilation
[Ref.: #43748]	potassium tellurite ChEBI	+	assimilation
[Ref.: #43748]	propionate ChEBI	+	respiration
[Ref.: #43748]	raffinose ChEBI	-	respiration
[Ref.: #43748]	salicin ChEBI	+	respiration
[Ref.: #43748]	sodium citrate ChEBI	-	assimilation
[Ref.: #43748]	stachyose ChEBI	-	respiration
[Ref.: #43748]	starch ChEBI	-	hydrolysis
[Ref.: #43748]	sucrose ChEBI	-	respiration
[Ref.: #43748]	trehalose ChEBI	-	respiration
[Ref.: #43748]	turanose ChEBI	-	respiration
[Ref.: #43748]	tween 80 ChEBI	+	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43748]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43748]	acid phosphatase	+	3.1.3.2
[Ref.: #43748]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43748]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43748]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43748]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43748]	alpha-glucosidase	-	3.2.1.20
[Ref.: #43748]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43748]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43748]	beta-galactosidase	-	3.2.1.23
[Ref.: #43748]	beta-glucosidase	-	3.2.1.21
[Ref.: #43748]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43748]	catalase	+	1.11.1.6
[Ref.: #43748]	cystine arylamidase	-	3.4.11.3
[Ref.: #43748]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43748]	esterase (C 4)	+
[Ref.: #43748]	esterase Lipase (C 8)	+
[Ref.: #43748]	leucine arylamidase	-	3.4.11.1
[Ref.: #43748]	lipase (C 14)	-
[Ref.: #43748]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43748]	trypsin	-	3.4.21.4
[Ref.: #43748]	urease	-	3.5.1.5
[Ref.: #43748]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43748]

Fatty acid	Percentage
C18:1ω7c	57
C16:0	15.2
C16:1ω7c / C16:1ω6c	5.3

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43748]	Sample type/isolated from	Populus euphratica sample at the ancient Khiyik River
[Ref.: #43748]	Geographic location (country and/or sea, region)	Xinjiang Uyghur Autonomous Region
[Ref.: #43748]	Country	China
[Ref.: #43748]	Country ISO 3 Code	CHN
[Ref.: #43748]	Continent	Asia
[Ref.: #43748]	Geographic location	40.7220°/85.3210°
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#River (Creek)
#Host	#Plants	#Tree

What are isolation sources categories?

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Global distribution of 16S sequence KC609749 (>99% sequence identity) for Pseudomonas populi subclade from Microbeatlas

Aquatic Samples	9095
Soil Samples	2532
Animal Samples	5000
Plant Samples	1436
Total Samples	18063

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43748]	Partial 16S rRNA gene sequence	KC609749		GenBank

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GC-content

61.6 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #43748]

Culture collection no.

JCM 19138, CCTCC AB 2013069, NRRL B-59988

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudomonas populi sp. nov., an endophytic bacterium isolated from Populus euphratica.	Anwar N, Abaydulla G, Zayadan B, Abdurahman M, Hamood B, Erkin R, Ismayil N, Rozahon M, Mamtimin H, Rahman E	Int J Syst Evol Microbiol	10.1099/ijsem.0.000896	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43748

Nusratgul Anwar, Gulsimay Abaydulla, Bolatkhan Zayadan, Mehfuzem Abdurahman, Buayshem Hamood, Raziya Erkin, Nurimangul Ismayil, Manziram Rozahon, Hormathan Mamtimin, Erkin Rahman: Pseudomonas populi sp. nov., an endophytic bacterium isolated from Populus euphratica. IJSEM 66: 1419 - 1425 2016 ( DOI 10.1099/ijsem.0.000896 , PubMed 26827750 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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