Membranihabitans marinus (CGMCC 1.13179, JCM 18886, CZ-AZ5)

Name: Membranihabitans marinus (CGMCC 1.13179, JCM 18886, CZ-AZ5)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140896

Type strain

Strain Designation CZ-AZ5

Culture col. no. CGMCC 1.13179 JCM 18886 CZ-AZ5

NCBI tax ID(s) 1227546

Special Collections JCM Literature strains

History Z.-P. Liu CZ-AZ5.

Links

Membranihabitans marinus CZ-AZ5 is an obligate aerobe, heterotroph, Gram-negative bacterium that forms circular colonies and was isolated from A biofilm of a biological filter in a recirculating aquaculture system.

Gram-negative rod-shaped colony-forming obligate aerobe heterotroph genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 28036

JCM 18886

@ref 20215

Last LPSN update 2026-02-09 11:33:44

Domain Bacteria

Phylum Bacteroidota

Class Saprospiria

Order Saprospirales

Family Saprospiraceae

Genus Membranihabitans

Species Membranihabitans marinus

Full scientific name Membranihabitans marinus (Li et al. 2016) Deshmukh and Oren 2022

Synonyms (1)

Membranicola marinus

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
43729	negative	3-3.7 µm	0.6-0.7 µm	rod-shaped
125439	negative				99.2
125438					91.5
125438	negative				95.066

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
43729	0.5-1 mm	orange, opaque	circular	7 days	MA agar

Pigmentation

@ref	Production	Name
43729		flexirubin type pigments

Culture and growth conditions

Culture medium

@ref	Name	Growth
43729	Marine agar (MA)

Culture temp

@ref	Growth	Type	Temperature (°C)
43729	positive	growth	20-40
43729	positive	optimum	30
67770	positive	growth	30

Culture pH

@ref	Ability	Type	PH	PH range
43729	positive	optimum	7.5
43729	positive	growth	6-8.5	alkaliphile

Physiology and metabolism

Oxygen tolerance

43729

Oxygen toleranceobligate aerobe

Nutrition type

43729

Typeheterotroph

Spore formation

@ref	Spore formation	Confidence
43729
125439		98.1

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43729	NaCl	positive	growth	0-5 %(w/v)
43729	NaCl	positive	optimum	1 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43729	29016 ChEBI	arginine	-	hydrolysis
43729		casein	-	hydrolysis
43729	17057 ChEBI	cellobiose	-	growth
43729	16947 ChEBI	citrate	-	growth
43729	12936 ChEBI	D-galactose	-	growth
43729	16024 ChEBI	D-mannose	-	growth
43729	17924 ChEBI	D-sorbitol	+	growth
43729	65327 ChEBI	D-xylose	-	growth
43729	4853 ChEBI	esculin	+	hydrolysis
43729	29806 ChEBI	fumarate	-	growth
43729	5291 ChEBI	gelatin	-	hydrolysis
43729	17234 ChEBI	glucose	-	fermentation
43729	17234 ChEBI	glucose	-	growth
43729	15428 ChEBI	glycine	-	growth
43729	29985 ChEBI	L-glutamate	+	growth
43729	17716 ChEBI	lactose	-	growth
43729	25115 ChEBI	malate	-	growth
43729	17306 ChEBI	maltose	-	growth
43729	29864 ChEBI	mannitol	-	growth
43729	17632 ChEBI	nitrate	-	reduction
43729	17309 ChEBI	pectin	+	growth
43729	15361 ChEBI	pyruvate	-	growth
43729	28017 ChEBI	starch	-	hydrolysis
43729	30031 ChEBI	succinate	-	growth
43729	27082 ChEBI	trehalose	+	growth
43729	53424 ChEBI	tween 20	+	hydrolysis
43729	53423 ChEBI	tween 40	+	hydrolysis
43729	53425 ChEBI	tween 60	+	hydrolysis
43729	53426 ChEBI	tween 80	-	hydrolysis
43729	16199 ChEBI	urea	-	hydrolysis

Antibiotic resistance

@ref	ChEBI	Metabolite	Sensitivity conc.	Resistance conc.
43729	28971	ampicillin	10 µg (disc)
43729	17698	chloramphenicol	30 µg (disc)
43729	3745	clindamycin	2 µg (disc)
43729	48923	erythromycin	15 µg (disc)
43729	17833	gentamicin	10 µg (disc)
43729	7809	oxacillin		1 µg (disc)
43729	18208	penicillin g	10 Unit (disc)
43729	17076	streptomycin	10 µg (disc)
43729	9332	sulfamethoxazole	300 µg (disc)
43729	27902	tetracycline	30 µg (disc)
43729	28001	vancomycin	30 µg (disc)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
43729	16136 ChEBI	hydrogen sulfide
43729	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
43729	acid phosphatase	+	3.1.3.2
43729	alkaline phosphatase	+	3.1.3.1
43729	alpha-chymotrypsin	-	3.4.21.1
43729	alpha-fucosidase	+	3.2.1.51
43729	alpha-galactosidase	+	3.2.1.22
43729	alpha-glucosidase	+	3.2.1.20
43729	alpha-mannosidase	+	3.2.1.24
43729	beta-galactosidase	+	3.2.1.23
43729	beta-glucosidase	+	3.2.1.21
43729	beta-glucuronidase	-	3.2.1.31
43729	catalase	+	1.11.1.6
43729	cystine arylamidase	+	3.4.11.3
43729	cytochrome oxidase	-	1.9.3.1
43729	esterase (C 4)	-
43729	esterase Lipase (C 8)	+
43729	leucine arylamidase	+	3.4.11.1
43729	lipase (C 14)	-
43729	N-acetyl-beta-glucosaminidase	+	3.2.1.52
43729	naphthol-AS-BI-phosphohydrolase	+
43729	trypsin	-	3.4.21.4
43729	valine arylamidase	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Food production	#Aquaculture
#Environmental	#Biofilm	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
43729	A biofilm of a biological filter in a recirculating aquaculture system	Tianjin	China	CHN	Asia
67770	Biological filter in a marine recirculating aquaculture system in Tianjin		China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence JX306763 (>99% sequence identity) for Membranicola marinus subclade from Microbeatlas

Aquatic Samples	1162
Soil Samples	35
Animal Samples	47
Plant Samples	9
Total Samples	1253

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2172915v1 assembly for Membranihabitans marinus CZ-AZ5	scaffold	GCA_021729155	1227546.8	8046629151	1227546	55.21
124043	ASM3954428v1 assembly for Membranihabitans marinus JCM 18886	scaffold	GCA_039544285			1227546	33.4

16S sequences

@ref	Description	Accession	Database
43729	Membranihabitans marinus strain CZ-AZ5 16S ribosomal RNA gene, partial sequence	JX306763

GC content

@ref	GC-content (mol%)	Method
67770	40.1	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Membranihabitans marinus CZ-AZ5
NCBI: GCA_021729155

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.10	no
125439	motility	BacteriaNetⓘ	no	64.30	no
125439	gram_stain	BacteriaNetⓘ	negative	99.20	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	73.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Membranihabitans marinus CZ-AZ5
NCBI: GCA_021729155.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	95.07	no
125438	anaerobic	anaerobicⓘ	no	93.43	no
125438	aerobic	aerobicⓘ	yes	81.39	yes
125438	spore-forming	spore-formingⓘ	no	89.44	no
125438	thermophilic	thermophileⓘ	no	92.92	yes
125438	flagellated	motile2+ⓘ	no	91.50	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Membranicola marinus gen. nov., sp. nov., a new member of the family Saprospiraceae isolated from a biofilter in a recirculating aquaculture system.	Li X, Liu Y, Chen Z, Liu LZ, Liu ZP, Liu Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.000870	2015

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43729	Xian Li, Ying Liu, Zhu Chen, Liang-Zi Liu, Zhi-Pei Liu. Ying Liu: Membranicola marinus gen. nov., sp. nov., a new member of the family Saprospiraceae isolated from a biofilter in a recirculating aquaculture system. IJSEM 66: 1275 - 1280 2016 ( DOI 10.1099/ijsem.0.000870 , PubMed 26702614 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Membranihabitans marinus (CGMCC 1.13179, JCM 18886, CZ-AZ5)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Nutrition type

Spore formation

Halophily

Metabolite utilization

Antibiotic resistance

Metabolite production

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_021729155

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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