Flavobacterium lutivivi (CGMCC 1.15347, KCTC 42935, HQQ)

Name: Flavobacterium lutivivi (CGMCC 1.15347, KCTC 42935, HQQ)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140887

Type strain

Strain Designation HQQ

Culture col. no. CGMCC 1.15347 KCTC 42935 HQQ

NCBI tax ID(s) 1677894

Special Collections KCTC Literature strains

Links

Flavobacterium lutivivi HQQ is an obligate aerobe, Gram-negative, motile prokaryote that forms circular colonies and was isolated from The Zhuozhou wastewater treatment plant.

Gram-negative motile rod-shaped colony-forming obligate aerobe genome sequence 16S sequence

Name and taxonomic classification

SI-ID 288149

KCTC 42935

@ref 20215

Last LPSN update 2025-12-16 10:03:42

Domain Pseudomonadati

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Flavobacterium

Species Flavobacterium lutivivi

Full scientific name Flavobacterium lutivivi Feng et al. 2016

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape
43717	negative	0.8-1 µm	0.3-0.4 nm	rod-shaped
125439	negative
125438
125438	negative

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
43717	1.8-2.5 mm	Yellow	circular	3 days	R2A agar

Pigmentation

@ref	Production	Name
43717		Flexirubin-type

Culture and growth conditions

Culture medium

@ref	Name	Growth
43717	Reasoner's 2A agar (R2A)
43717	LB (Luria-Bertani) MEDIUM
43717	MA agar
43717	NA agar

Culture temp

@ref	Growth	Type	Temperature (°C)
43717	positive	growth	18-37
43717	positive	optimum	25

Culture pH

@ref	Ability	Type	PH
43717	positive	optimum	7
43717	positive	growth	6-9

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
43717	obligate aerobe
125439	obligate aerobe

Spore formation

@ref	Spore formation	Confidence
125439		99.2
125438		93.803

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43717	NaCl	positive	growth	0-1 %(w/v)
43717	NaCl	positive	optimum	0 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43717	90259 ChEBI	4-nitrophenyl beta-D-glucopyranoside	-	assimilation
43717	17128 ChEBI	adipate	-	assimilation
43717	27613 ChEBI	amygdalin	-	builds acid from
43717	18305 ChEBI	arbutin	-	builds acid from
43717	85146 ChEBI	carboxymethylcellulose	+	hydrolysis
43717		casein	+	hydrolysis
43717	17057 ChEBI	cellobiose	-	builds acid from
43717	17108 ChEBI	D-arabinose	-	builds acid from
43717	18333 ChEBI	D-arabitol	-	builds acid from
43717	15824 ChEBI	D-fructose	-	builds acid from
43717	28847 ChEBI	D-fucose	-	builds acid from
43717	12936 ChEBI	D-galactose	-	builds acid from
43717	17634 ChEBI	D-glucose	-	assimilation
43717	17634 ChEBI	D-glucose	+	builds acid from
43717	62318 ChEBI	D-lyxose	-	builds acid from
43717	16899 ChEBI	D-mannitol	-	builds acid from
43717	16024 ChEBI	D-mannose	-	assimilation
43717	16024 ChEBI	D-mannose	+	builds acid from
43717	16988 ChEBI	D-ribose	-	builds acid from
43717	17924 ChEBI	D-sorbitol	-	builds acid from
43717	16443 ChEBI	D-tagatose	-	builds acid from
43717	65327 ChEBI	D-xylose	-	builds acid from
43717	27689 ChEBI	decanoate	-	assimilation
43717	17113 ChEBI	erythritol	-	builds acid from
43717	4853 ChEBI	esculin	+	builds acid from
43717	4853 ChEBI	esculin	+	hydrolysis
43717	16813 ChEBI	galactitol	-	builds acid from
43717	5291 ChEBI	gelatin	+	hydrolysis
43717	28066 ChEBI	gentiobiose	-	builds acid from
43717	17754 ChEBI	glycerol	-	assimilation
43717	28087 ChEBI	glycogen	+	builds acid from
43717	15443 ChEBI	inulin	-	builds acid from
43717	30849 ChEBI	L-arabinose	-	builds acid from
43717	18403 ChEBI	L-arabitol	-	builds acid from
43717	18287 ChEBI	L-fucose	-	builds acid from
43717	62345 ChEBI	L-rhamnose	-	builds acid from
43717	17266 ChEBI	L-sorbose	-	builds acid from
43717	65328 ChEBI	L-xylose	-	builds acid from
43717	17716 ChEBI	lactose	-	builds acid from
43717	25094 ChEBI	lysine	-	hydrolysis
43717	25115 ChEBI	malate	-	assimilation
43717	17306 ChEBI	maltose	+	builds acid from
43717	6731 ChEBI	melezitose	+	builds acid from
43717	28053 ChEBI	melibiose	-	builds acid from
43717	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from
43717	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from
43717	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from
43717	17268 ChEBI	myo-inositol	-	builds acid from
43717	506227 ChEBI	N-acetylglucosamine	-	builds acid from
43717	17632 ChEBI	nitrate	-	reduction
43717	18257 ChEBI	ornithine	-	hydrolysis
43717	18401 ChEBI	phenylacetate	-	assimilation
43717		potassium 2-dehydro-D-gluconate	-	builds acid from
43717		potassium 5-dehydro-D-gluconate	-	builds acid from
43717	32032 ChEBI	potassium gluconate	-	builds acid from
43717	16634 ChEBI	raffinose	-	builds acid from
43717	15963 ChEBI	ribitol	-	builds acid from
43717	17814 ChEBI	salicin	-	builds acid from
43717	53258 ChEBI	sodium citrate	-	assimilation
43717	28017 ChEBI	starch	-	builds acid from
43717	28017 ChEBI	starch	+	hydrolysis
43717	17992 ChEBI	sucrose	-	builds acid from
43717	27082 ChEBI	trehalose	-	builds acid from
43717	32528 ChEBI	turanose	-	builds acid from
43717	18186 ChEBI	tyrosine	+	hydrolysis
43717	16199 ChEBI	urea	-	hydrolysis
43717	17151 ChEBI	xylitol	-	builds acid from

Antibiotic resistance

@ref	ChEBI	Metabolite	Sensitivity conc.
43717	2637	amikacin	30 µg (disc)
43717	28971	ampicillin	10 µg (disc)
43717	3393	carbenicillin	100 µg (disc)
43717	474053	cefazolin	30 µg (disc)
43717	3493	cefoperazone	30 µg (disc)
43717	3508	ceftazidime	30 µg (disc)
43717	29007	ceftriaxone	30 µg (disc)
43717	3515	cefuroxime	30 µg (disc)
43717	3534	cephalexin	30 µg (disc)
43717	3547	cephradine	30 µg (disc)
43717	17698	chloramphenicol	30 µg (disc)
43717	100241	ciprofloxacin	5 µg (disc)
43717	3745	clindamycin	2 µg (disc)
43717	3770	co-trimoxazole	25 µg (disc)
43717	50845	doxycycline	30 µg (disc)
43717	48923	erythromycin	15 µg (disc)
43717	5195	furazolidone	15 µg (disc)
43717	17833	gentamicin	10 µg (disc)
43717	6104	kanamycin	30 µg (disc)
43717	31845	midecamycin	30 µg (disc)
43717	50694	minocycline	30 µg (disc)
43717	7507	neomycin	30 µg (disc)
43717	100246	norfloxacin	10 µg (disc)
43717	7731	ofloxacin	5 µg (disc)
43717	7809	oxacillin
43717	18208	penicillin g	10 Unit (disc)
43717	8232	piperacillin	100 µg (disc)
43717	8309	polymyxin b	300 Unit (disc)
43717	27902	tetracycline	30 µg (disc)
43717	28001	vancomycin	30 µg (disc)

Metabolite production

@ref	Chebi-ID	Metabolite
43717	15688 ChEBI	acetoin
43717	16136 ChEBI	hydrogen sulfide
43717	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
43717	15688 ChEBI	acetoin	-

Enzymes

@ref	Value	Activity	Ec
43717	acid phosphatase	+	3.1.3.2
43717	alkaline phosphatase	+	3.1.3.1
43717	alpha-galactosidase	-	3.2.1.22
43717	alpha-glucosidase	+	3.2.1.20
43717	alpha-mannosidase	-	3.2.1.24
43717	arginine dihydrolase	-	3.5.3.6
43717	beta-D-fucosidase	-	3.2.1.38
43717	beta-galactosidase	-	3.2.1.23
43717	beta-glucosidase	-	3.2.1.21
43717	beta-glucuronidase	-	3.2.1.31
43717	catalase	+	1.11.1.6
43717	chymotrypsin	-	3.4.4.5
43717	cystine arylamidase	-	3.4.11.3
43717	cytochrome oxidase	+	1.9.3.1
43717	esterase (C 4)	+
43717	esterase Lipase (C 8)	+
43717	leucine arylamidase	+	3.4.11.1
43717	lipase (C 14)	-
43717	naphthol-AS-BI-phosphohydrolase	+
43717	trypsin	+	3.4.21.4
43717	tryptophan deaminase	-	4.1.99.1
43717	valine arylamidase	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Waste	#Wastewater
#Engineered	#Waste	#Water treatment plant

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
43717	The Zhuozhou wastewater treatment plant	Baoding city, Hebei Province	China	CHN	Asia	39.524	115.803 39.524/115.803

Taxonmaps

69479

Global distribution of 16S sequence KT215492 (>99% sequence identity) for Flavobacterium lutivivi subclade from Microbeatlas

Aquatic Samples	1204
Soil Samples	9
Animal Samples	72
Plant Samples	9
Total Samples	1294

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1464227v1 assembly for Flavobacterium lutivivi CGMCC 1.15347	scaffold	GCA_014642275	1677894.3	2996393979	1677894	46.39

Genome browser: GCA_014642275

16S sequences

@ref	Description	Accession	Database
43717	Flavobacterium lutivivi strain HQQ 16S ribosomal RNA gene, partial sequence	KT215492

GC content

@ref	GC-content (mol%)	Method
43717	32	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Flavobacterium lutivivi CGMCC 1.15347
NCBI: GCA_014642275

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.20	no
125439	motility	BacteriaNetⓘ	no	66.70	no
125439	gram_stain	BacteriaNetⓘ	negative	99.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Flavobacterium lutivivi CGMCC 1.15347
NCBI: GCA_014642275.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.96	yes
125438	anaerobic	anaerobicⓘ	no	95.75	yes
125438	aerobic	aerobicⓘ	yes	87.42	yes
125438	spore-forming	spore-formingⓘ	no	93.80	no
125438	thermophilic	thermophileⓘ	no	98.32	yes
125438	flagellated	motile2+ⓘ	no	92.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Flavobacterium lutivivi sp. nov., isolated from activated sludge.	Feng Q, Han L, Nogi Y, Hong Q, Lv J	Int J Syst Evol Microbiol	10.1099/ijsem.0.000892	2016

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43717	Qingqing Feng, Lu Han, Yuichi Nogi, Qing Hong, Jie Lv: Flavobacterium lutivivi sp. nov., isolated from activated sludge. IJSEM 66: 1394 - 1400 2016 ( DOI 10.1099/ijsem.0.000892 , PubMed 26769164 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Flavobacterium lutivivi (CGMCC 1.15347, KCTC 42935, HQQ)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_014642275

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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