Name: Flavobacterium lutivivi HQQ
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140887

Type strain:

Species: Flavobacterium lutivivi

Strain Designation: HQQ

Culture col. no.: CGMCC 1.15347, KCTC 42935

NCBI tax ID(s): 1677894 (species)

Section

Flavobacterium lutivivi HQQ is an obligate aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from The Zhuozhou wastewater treatment plant.

colony-forming
Gram-negative
motile
rod-shaped
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Flavobacterium*
	Species	**Flavobacterium lutivivi**
	Full Scientific Name (LPSN)	Flavobacterium lutivivi Feng et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43717]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.997

[Ref.: #43717]	Cell length	0.8-1 µm

[Ref.: #43717]	Cell width	0.3-0.4 nm

[Ref.: #43717]	Cell shape	rod-shaped

[Ref.: #43717]	Motility	yes

[Ref.: #43717]	Colony size	1.8-2.5 mm
[Ref.: #43717]	Colony color	Yellow
[Ref.: #43717]	Colony shape	circular
[Ref.: #43717]	Incubation period	3 days
[Ref.: #43717]	Cultivation medium used	R2A agar

[Ref.: #43717]	Pigment production	no
[Ref.: #43717]	Pigment name	Flexirubin-type

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43717]

Culture medium

Reasoner's 2A agar (R2A)

[Ref.: #43717]

Culture medium growth

[Ref.: #43717]

Culture medium

LB (Luria-Bertani) MEDIUM

[Ref.: #43717]

Culture medium growth

[Ref.: #43717]

Culture medium

MA agar

[Ref.: #43717]

Culture medium growth

[Ref.: #43717]

Culture medium

NA agar

[Ref.: #43717]

Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #43717]			growth	18-37 °C
[Ref.: #43717]			optimum	25 °C

[Ref.: #43717]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #43717]			optimum	7
[Ref.: #43717]			growth	6-9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43717]

Oxygen tolerance

obligate aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %100

[Ref.: #43717]

Halophily / tolerance level

non-halophilic

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43717]		NaCl		growth	0-1	%(w/v)
[Ref.: #43717]		NaCl		optimum	0	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43717]	4-nitrophenyl beta-D-glucopyranoside ChEBI	-	assimilation
[Ref.: #43717]	adipate ChEBI	-	assimilation
[Ref.: #43717]	amygdalin ChEBI	-	builds acid from
[Ref.: #43717]	arbutin ChEBI	-	builds acid from
[Ref.: #43717]	carboxymethylcellulose ChEBI	+	hydrolysis
[Ref.: #43717]	casein	+	hydrolysis
[Ref.: #43717]	cellobiose ChEBI	-	builds acid from
[Ref.: #43717]	D-arabinose ChEBI	-	builds acid from
[Ref.: #43717]	D-arabitol ChEBI	-	builds acid from
[Ref.: #43717]	D-fructose ChEBI	-	builds acid from
[Ref.: #43717]	D-fucose ChEBI	-	builds acid from
[Ref.: #43717]	D-galactose ChEBI	-	builds acid from
[Ref.: #43717]	D-glucose ChEBI	-	assimilation
[Ref.: #43717]	D-glucose ChEBI	+	builds acid from
[Ref.: #43717]	D-lyxose ChEBI	-	builds acid from
[Ref.: #43717]	D-mannitol ChEBI	-	builds acid from
[Ref.: #43717]	D-mannose ChEBI	-	assimilation
[Ref.: #43717]	D-mannose ChEBI	+	builds acid from
[Ref.: #43717]	D-ribose ChEBI	-	builds acid from
[Ref.: #43717]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #43717]	D-tagatose ChEBI	-	builds acid from
[Ref.: #43717]	D-xylose ChEBI	-	builds acid from
[Ref.: #43717]	decanoate ChEBI	-	assimilation
[Ref.: #43717]	erythritol ChEBI	-	builds acid from
[Ref.: #43717]	esculin ChEBI	+	builds acid from
[Ref.: #43717]	esculin ChEBI	+	hydrolysis
[Ref.: #43717]	galactitol ChEBI	-	builds acid from
[Ref.: #43717]	gelatin ChEBI	+	hydrolysis
[Ref.: #43717]	gentiobiose ChEBI	-	builds acid from
[Ref.: #43717]	glycerol ChEBI	-	assimilation
[Ref.: #43717]	glycogen ChEBI	+	builds acid from
[Ref.: #43717]	inulin ChEBI	-	builds acid from
[Ref.: #43717]	L-arabinose ChEBI	-	builds acid from
[Ref.: #43717]	L-arabitol ChEBI	-	builds acid from
[Ref.: #43717]	L-fucose ChEBI	-	builds acid from
[Ref.: #43717]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #43717]	L-sorbose ChEBI	-	builds acid from
[Ref.: #43717]	L-xylose ChEBI	-	builds acid from
[Ref.: #43717]	lactose ChEBI	-	builds acid from
[Ref.: #43717]	lysine ChEBI	-	hydrolysis
[Ref.: #43717]	malate ChEBI	-	assimilation
[Ref.: #43717]	maltose ChEBI	+	builds acid from
[Ref.: #43717]	melezitose ChEBI	+	builds acid from
[Ref.: #43717]	melibiose ChEBI	-	builds acid from
[Ref.: #43717]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from
[Ref.: #43717]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #43717]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #43717]	myo-inositol ChEBI	-	builds acid from
[Ref.: #43717]	N-acetylglucosamine ChEBI	-	builds acid from
[Ref.: #43717]	nitrate ChEBI	-	reduction
[Ref.: #43717]	ornithine ChEBI	-	hydrolysis
[Ref.: #43717]	phenylacetate ChEBI	-	assimilation
[Ref.: #43717]	potassium 2-dehydro-D-gluconate	-	builds acid from
[Ref.: #43717]	potassium 5-dehydro-D-gluconate	-	builds acid from
[Ref.: #43717]	potassium gluconate ChEBI	-	builds acid from
[Ref.: #43717]	raffinose ChEBI	-	builds acid from
[Ref.: #43717]	ribitol ChEBI	-	builds acid from
[Ref.: #43717]	salicin ChEBI	-	builds acid from
[Ref.: #43717]	sodium citrate ChEBI	-	assimilation
[Ref.: #43717]	starch ChEBI	-	builds acid from
[Ref.: #43717]	starch ChEBI	+	hydrolysis
[Ref.: #43717]	sucrose ChEBI	-	builds acid from
[Ref.: #43717]	trehalose ChEBI	-	builds acid from
[Ref.: #43717]	turanose ChEBI	-	builds acid from
[Ref.: #43717]	tyrosine ChEBI	+	hydrolysis
[Ref.: #43717]	urea ChEBI	-	hydrolysis
[Ref.: #43717]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #43717]	amikacin ChEBI	yes	30	µg (disc)
[Ref.: #43717]	ampicillin ChEBI	yes	10	µg (disc)
[Ref.: #43717]	carbenicillin ChEBI	yes	100	µg (disc)
[Ref.: #43717]	cefazolin ChEBI	yes	30	µg (disc)
[Ref.: #43717]	cefoperazone ChEBI	yes	30	µg (disc)
[Ref.: #43717]	ceftazidime ChEBI	yes	30	µg (disc)
[Ref.: #43717]	ceftriaxone ChEBI	yes	30	µg (disc)
[Ref.: #43717]	cefuroxime ChEBI	yes	30	µg (disc)
[Ref.: #43717]	cephalexin ChEBI	yes	30	µg (disc)
[Ref.: #43717]	cephradine ChEBI	yes	30	µg (disc)
[Ref.: #43717]	chloramphenicol ChEBI	yes	30	µg (disc)
[Ref.: #43717]	ciprofloxacin ChEBI	yes	5	µg (disc)
[Ref.: #43717]	clindamycin ChEBI	yes	2	µg (disc)
[Ref.: #43717]	co-trimoxazole ChEBI	yes	25	µg (disc)
[Ref.: #43717]	doxycycline ChEBI	yes	30	µg (disc)
[Ref.: #43717]	erythromycin ChEBI	yes	15	µg (disc)
[Ref.: #43717]	furazolidone ChEBI	yes	15	µg (disc)
[Ref.: #43717]	gentamicin ChEBI	yes	10	µg (disc)
[Ref.: #43717]	kanamycin ChEBI	yes	30	µg (disc)
[Ref.: #43717]	midecamycin ChEBI	yes	30	µg (disc)
[Ref.: #43717]	minocycline ChEBI	yes	30	µg (disc)
[Ref.: #43717]	neomycin ChEBI	yes	30	µg (disc)
[Ref.: #43717]	norfloxacin ChEBI	yes	10	µg (disc)
[Ref.: #43717]	ofloxacin ChEBI	yes	5	µg (disc)
[Ref.: #43717]	oxacillin ChEBI				yes	1	µg (disc)
[Ref.: #43717]	penicillin g ChEBI	yes	10	Unit (disc)
[Ref.: #43717]	piperacillin ChEBI	yes	100	µg (disc)
[Ref.: #43717]	polymyxin b ChEBI	yes	300	Unit (disc)
[Ref.: #43717]	tetracycline ChEBI	yes	30	µg (disc)
[Ref.: #43717]	vancomycin ChEBI	yes	30	µg (disc)
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #43717]	acetoin ChEBI	no
[Ref.: #43717]	hydrogen sulfide ChEBI	no
[Ref.: #43717]	indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #43717]		acetoin ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #43717]	acid phosphatase	+	3.1.3.2
[Ref.: #43717]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43717]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43717]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43717]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43717]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43717]	beta-D-fucosidase	-	3.2.1.38
[Ref.: #43717]	beta-galactosidase	-	3.2.1.23
[Ref.: #43717]	beta-glucosidase	-	3.2.1.21
[Ref.: #43717]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43717]	catalase	+	1.11.1.6
[Ref.: #43717]	chymotrypsin	-	3.4.4.5
[Ref.: #43717]	cystine arylamidase	-	3.4.11.3
[Ref.: #43717]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43717]	esterase (C 4)	+
[Ref.: #43717]	esterase Lipase (C 8)	+
[Ref.: #43717]	leucine arylamidase	+	3.4.11.1
[Ref.: #43717]	lipase (C 14)	-
[Ref.: #43717]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43717]	trypsin	+	3.4.21.4
[Ref.: #43717]	tryptophan deaminase	-	4.1.99.1
[Ref.: #43717]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43717]	Sample type/isolated from	The Zhuozhou wastewater treatment plant
[Ref.: #43717]	Geographic location (country and/or sea, region)	Baoding city, Hebei Province
[Ref.: #43717]	Country	China
[Ref.: #43717]	Country ISO 3 Code	CHN
[Ref.: #43717]	Continent	Asia
[Ref.: #43717]	Geographic location	39.5240°/115.8030°
* marker position based on {}

Isolation sources categories

#Engineered	#Waste	#Wastewater
#Engineered	#Waste	#Water treatment plant

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KT215492 (>99% sequence identity) for Flavobacterium lutivivi subclade from Microbeatlas

Aquatic Samples	1204
Soil Samples	9
Animal Samples	72
Plant Samples	9
Total Samples	1294

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43717]	16S rRNA gene sequence	KT215492		GenBank

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Flavobacterium lutivivi CGMCC 1.15347	GCA_014642275	scaffold	GenBank	1677894 tax ID	*
[Ref.: #66792]	Flavobacterium lutivivi strain CGMCC 1.15347	1677894.3	wgs	PATRIC	1677894 tax ID	*

[Ref.: #43717]

GC-content

32 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Flavobacterium lutivivi CGMCC 1.15347 NCBI: GCA_014642275.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Flavobacterium lutivivi CGMCC 1.15347 NCBI: GCA_014642275.1
[Ref.: #69480]	flagellated	no	96.758	no
[Ref.: #69480]	gram-positive	no	98.287	no
[Ref.: #69480]	anaerobic	no	99.116	yes
[Ref.: #69480]	aerobic	yes	87.885	no
[Ref.: #69480]	halophile	no	97.086	yes
[Ref.: #69480]	spore-forming	no	95.542	no
[Ref.: #69480]	thermophile	no	90.695	yes
[Ref.: #69480]	glucose-util	yes	73.639	yes
[Ref.: #69480]	motile	no	94.045	no
[Ref.: #69480]	glucose-ferment	no	91.621	no

Availability in culture collections External links

[Ref.: #43717]

Culture collection no.

CGMCC 1.15347, KCTC 42935

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Flavobacterium lutivivi sp. nov., isolated from activated sludge.	Feng Q, Han L, Nogi Y, Hong Q, Lv J	Int J Syst Evol Microbiol	10.1099/ijsem.0.000892	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43717

Qingqing Feng, Lu Han, Yuichi Nogi, Qing Hong, Jie Lv: Flavobacterium lutivivi sp. nov., isolated from activated sludge. IJSEM 66: 1394 - 1400 2016 ( DOI 10.1099/ijsem.0.000892 , PubMed 26769164 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Flavobacterium lutivivi in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Flavobacterium lutivivi CGMCC 1.15347

Flavobacterium lutivivi CGMCC 1.15347

Change proposal

Change proposal