Bacteroides caecicola (LIPI12-4-Ck732, JSAT12-4-Ck732, InaCC B449)

Name: Bacteroides caecicola (LIPI12-4-Ck732, JSAT12-4-Ck732, InaCC B449)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140882

Type strain

Strain Designation LIPI12-4-Ck732, JSAT12-4-Ck732, C13EG70

Culture col. no. LIPI12-4-Ck732 JSAT12-4-Ck732 InaCC B449 NBRC 110958 C13EG70

NCBI tax ID(s) 1462569

Special Collections Literature strains

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Bacteroides caecicola LIPI12-4-Ck732 is an obligate anaerobe, Gram-negative, rod-shaped prokaryote that forms circular colonies and was isolated from The caecum of a chicken.

Gram-negative rod-shaped colony-forming obligate anaerobe 16S sequence

Name and taxonomic classification

SI-ID 133594

NBRC 110958

@ref 20215

Last LPSN update 2025-12-16 10:03:42

Domain Pseudomonadati

Phylum Bacteroidota

Class Bacteroidia

Order Bacteroidales

Family Bacteroidaceae

Genus Bacteroides

Species Bacteroides caecicola

Full scientific name Bacteroides caecicola Irisawa et al. 2016

Synonyms (1)

"Phocaeicola caecicola"

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
43707	negative	0.4-20 µm	0.4-0.8 µm	rod-shaped

Colony morphology

@ref	Colony size	Colony color	Colony shape	Medium used
43707	1-2 mm	white-greyish	circular	EG agar supplemented with 5 % (v/v) horse blood

Culture and growth conditions

Culture medium

@ref	Name	Growth
43707	EG agar supplemented with 5 % (v/v) horse blood

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
43707	positive	growth	20-45
43707	positive	optimum	30-37	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
43707	positive	optimum	7-8
43707	positive	growth	4-8	acidophile

Physiology and metabolism

Oxygen tolerance

43707

Oxygen toleranceobligate anaerobe

Spore formation

43707

Spore formationno

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43707	17057 ChEBI	cellobiose	+/-	fermentation
43707	16899 ChEBI	D-mannitol	-	builds acid from
43707	16024 ChEBI	D-mannose	+	builds acid from
43707	17924 ChEBI	D-sorbitol	-	builds acid from
43707	65327 ChEBI	D-xylose	+	builds acid from
43707	4853 ChEBI	esculin	+	hydrolysis
43707	5291 ChEBI	gelatin	-	hydrolysis
43707	17234 ChEBI	glucose	+	builds acid from
43707	17754 ChEBI	glycerol	-	builds acid from
43707	30849 ChEBI	L-arabinose	+	builds acid from
43707	62345 ChEBI	L-rhamnose	-	builds acid from
43707	62345 ChEBI	L-rhamnose	-	fermentation
43707	17716 ChEBI	lactose	+	builds acid from
43707	17306 ChEBI	maltose	+	builds acid from
43707	6731 ChEBI	melezitose	-	builds acid from
43707	17632 ChEBI	nitrate	-	reduction
43707	16634 ChEBI	raffinose	+	builds acid from
43707	17814 ChEBI	salicin	-	builds acid from
43707	17814 ChEBI	salicin	-	fermentation
43707	28017 ChEBI	starch	+	degradation
43707	17992 ChEBI	sucrose	+	builds acid from
43707	27082 ChEBI	trehalose	-	builds acid from
43707	37166 ChEBI	xylan	+	degradation

Metabolite production

@ref	Chebi-ID	Metabolite	Production
43707	35581 ChEBI	indole
43707	17272 ChEBI	propionate

Enzymes

@ref	Value	Activity	Ec
43707	6-phospho-beta-galactosidase	-	3.2.1.85
43707	alanine arylamidase	+	3.4.11.2
43707	alkaline phosphatase	+	3.1.3.1
43707	alpha-arabinosidase	+	3.2.1.55
43707	alpha-fucosidase	+	3.2.1.51
43707	alpha-galactosidase	+	3.2.1.22
43707	alpha-glucosidase	+	3.2.1.20
43707	arginine arylamidase	+
43707	beta-galactosidase	+	3.2.1.23
43707	beta-glucosidase	+	3.2.1.21
43707	beta-glucuronidase	+	3.2.1.31
43707	catalase	-	1.11.1.6
43707	glutamate decarboxylase	-	4.1.1.15
43707	glutamyl-glutamate arylamidase	+
43707	glycin arylamidase	+
43707	histidine arylamidase	+
43707	leucine arylamidase	+	3.4.11.1
43707	N-acetyl-beta-glucosaminidase	+	3.2.1.52
43707	phenylalanine arylamidase	+
43707	proline-arylamidase	-	3.4.11.5
43707	pyroglutamic acid arylamidase	-
43707	serine arylamidase	+
43707	tyrosine arylamidase	+
43707	urease	-	3.5.1.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Birds	#Chicken
#Host Body-Site	#Gastrointestinal tract	#Large intestine

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
43707	The caecum of a chicken	Bogor	Indonesia	IDN	Asia	2013-02

Taxonmaps

69479

Global distribution of 16S sequence AB910338 (>99% sequence identity) for Bacteroides caecicola subclade from Microbeatlas

Aquatic Samples	605
Soil Samples	522
Animal Samples	6849
Plant Samples	171
Total Samples	8147

Interaction and safety

Sequence information

16S sequences

@ref	Description	Accession	Database
43707	Bacteroides caecicola gene for 16S ribosomal RNA, partial sequence, strain: C13EG70	AB910337
43707	Bacteroides caecicola gene for 16S ribosomal RNA, partial sequence, strain: C13EG118	AB910338

GC content

@ref	GC-content (mol%)	Method
43707	45.6	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Analysis of 1,000 Type-Strain Genomes Improves Taxonomic Classification of Bacteroidetes.	Garcia-Lopez M, Meier-Kolthoff JP, Tindall BJ, Gronow S, Woyke T, Kyrpides NC, Hahnke RL, Goker M.	Front Microbiol	10.3389/fmicb.2019.02083	2019
Phylogeny	Bacteroides caecicola sp. nov. and Bacteroides gallinaceum sp. nov., isolated from the caecum of an Indonesian chicken.	Irisawa T, Saputra S, Kitahara M, Sakamoto M, Sulistiani, Yulineri T, Dinoto A, Ohkuma M	Int J Syst Evol Microbiol	10.1099/ijsem.0.000899	2016

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43707	Tomohiro Irisawa, Sugiyono Saputra, Maki Kitahara, Mitsuo Sakamoto, Sulistiani, Titin Yulineri, Achmad Dinoto, Moriya Ohkuma: Bacteroides caecicola sp. nov. and Bacteroides gallinaceum sp. nov., isolated from the caecum of an Indonesian chicken. IJSEM 66: 1431 - 1437 2016 ( DOI 10.1099/ijsem.0.000899 , PubMed 26769263 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Bacteroides caecicola (LIPI12-4-Ck732, JSAT12-4-Ck732, InaCC B449)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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