Arenimonas aestuarii (KACC 18504, JCM 31129, DSM 107087)

Name: Arenimonas aestuarii (KACC 18504, JCM 31129, DSM 107087)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140875

Type strain

Strain Designation S2-21

Culture col. no. KACC 18504 JCM 31129 DSM 107087 S2-21

NCBI tax ID(s) 1708347

Special Collections DSMZ JCM Literature strains

History <- KACC <- C. O. Jeon, Department of Life Science, Chung-Ang University, Seoul, Republic of Korea; S2-21 C. O. Jeon; Chung-Ang Univ., South Korea; S2-21.

Links

Arenimonas aestuarii S2-21 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from The Asan estuary.

Gram-negative rod-shaped colony-forming aerobe 16S sequence Bacteria

Name and taxonomic classification

SI-ID 404069

DSM 107087

@ref 20215

Last LPSN update 2026-02-09 11:33:44

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Lysobacterales

Family Lysobacteraceae

Genus Arenimonas

Species Arenimonas aestuarii

Full scientific name Arenimonas aestuarii Jeong et al. 2016

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
43702	negative	1-1.7 µm	0.3-0.4 µm	rod-shaped

Colony morphology

@ref	Colony color	Colony shape	Medium used
43702	White	circular	R2A agar

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
43702	Reasoner's 2A agar (R2A)
43702	Trypticase Soy Agar (TSA)
64809	R2A MEDIUM (DSMZ Medium 830)	Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
43702	positive	growth	15-40
43702	positive	optimum	25-30
64809	positive	growth	28
67770	positive	growth	30

Culture pH

@ref	Ability	Type	PH
43702	positive	optimum	7
43702	positive	growth	7-8

Physiology and metabolism

Oxygen tolerance

43702

Oxygen toleranceaerobe

Halophily

@ref	Halophily level	Salt	Growth	Tested relation	Concentration
43702		NaCl	positive	growth	0-2 %(w/v)
43702	non-halophilic	NaCl	positive	optimum	0 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43702	62064 ChEBI	2,3-butanediol	-	oxidation
43702	64552 ChEBI	2-hydroxybutyrate	-	oxidation
43702	16763 ChEBI	2-oxobutanoate	-	oxidation
43702	30916 ChEBI	2-oxoglutarate	-	oxidation
43702	28644 ChEBI	2-oxopentanoate	-	oxidation
43702	16724 ChEBI	4-hydroxybutyrate	-	oxidation
43702	18101 ChEBI	4-hydroxyphenylacetic acid	-	oxidation
43702	30089 ChEBI	acetate	-	oxidation
43702	17128 ChEBI	adipate	-	assimilation
43702	40585 ChEBI	alpha-cyclodextrin	+	oxidation
43702	17925 ChEBI	alpha-D-glucose	-	oxidation
43702	36219 ChEBI	alpha-lactose	-	oxidation
43702	8295 ChEBI	beta-hydroxybutyrate	+	oxidation
43702	73706 ChEBI	bromosuccinate	-	oxidation
43702		casein	+	hydrolysis
43702	17057 ChEBI	cellobiose	-	oxidation
43702	16383 ChEBI	cis-aconitate	-	oxidation
43702	16947 ChEBI	citrate	-	oxidation
43702	15570 ChEBI	D-alanine	-	oxidation
43702	18333 ChEBI	D-arabitol	-	oxidation
43702	15824 ChEBI	D-fructose	-	oxidation
43702	15895 ChEBI	D-galactonic acid lactone	-	oxidation
43702	12936 ChEBI	D-galactose	-	oxidation
43702	18024 ChEBI	D-galacturonic acid	-	oxidation
43702	8391 ChEBI	D-gluconate	-	oxidation
43702	17784 ChEBI	D-glucosaminic acid	-	oxidation
43702	17634 ChEBI	D-glucose	-	assimilation
43702	14314 ChEBI	D-glucose 6-phosphate	-	oxidation
43702	15748 ChEBI	D-glucuronate	-	oxidation
43702	16899 ChEBI	D-mannitol	-	assimilation
43702	16899 ChEBI	D-mannitol	-	oxidation
43702	16024 ChEBI	D-mannose	-	assimilation
43702	16024 ChEBI	D-mannose	-	oxidation
43702	27605 ChEBI	D-psicose	-	oxidation
43702	33801 ChEBI	D-saccharate	-	oxidation
43702	16523 ChEBI	D-serine	-	oxidation
43702	17924 ChEBI	D-sorbitol	-	oxidation
43702	27689 ChEBI	decanoate	-	assimilation
43702	23652 ChEBI	dextrin	-	oxidation
43702	17126 ChEBI	DL-carnitine	-	oxidation
43702	17113 ChEBI	erythritol	-	oxidation
43702	4853 ChEBI	esculin	-	hydrolysis
43702	16000 ChEBI	ethanolamine	-	oxidation
43702	15740 ChEBI	formate	-	oxidation
43702	16865 ChEBI	gamma-aminobutyric acid	+	oxidation
43702	5291 ChEBI	gelatin	+	hydrolysis
43702	28066 ChEBI	gentiobiose	-	oxidation
43702	29042 ChEBI	glucose 1-phosphate	-	oxidation
43702	32323 ChEBI	glucuronamide	-	oxidation
43702	17754 ChEBI	glycerol	-	oxidation
43702	14336 ChEBI	glycerol 1-phosphate	-	oxidation
43702	28087 ChEBI	glycogen	+	oxidation
43702	73804 ChEBI	glycyl L-aspartic acid	+	oxidation
43702	73784 ChEBI	glycyl-l-glutamate	+	oxidation
43702	24741 ChEBI	hydroxyproline	+	oxidation
43702	17596 ChEBI	inosine	-	oxidation
43702	17240 ChEBI	itaconate	-	oxidation
43702	21217 ChEBI	L-alaninamide	+	oxidation
43702	16977 ChEBI	L-alanine	+	oxidation
43702	73786 ChEBI	L-alanylglycine	+	oxidation
43702	30849 ChEBI	L-arabinose	-	assimilation
43702	30849 ChEBI	L-arabinose	-	oxidation
43702	17196 ChEBI	L-asparagine	-	oxidation
43702	29991 ChEBI	L-aspartate	-	oxidation
43702	28120 ChEBI	L-fructose	-	oxidation
43702	29985 ChEBI	L-glutamate	-	oxidation
43702	15971 ChEBI	L-histidine	-	oxidation
43702	15603 ChEBI	L-leucine	-	oxidation
43702	15729 ChEBI	L-ornithine	-	oxidation
43702	17295 ChEBI	L-phenylalanine	-	oxidation
43702	17203 ChEBI	L-proline	+	oxidation
43702	18183 ChEBI	L-pyroglutamic acid	-	oxidation
43702	62345 ChEBI	L-rhamnose	-	oxidation
43702	17115 ChEBI	L-serine	-	oxidation
43702	16857 ChEBI	L-threonine	-	oxidation
43702	24996 ChEBI	lactate	-	oxidation
43702	6359 ChEBI	lactulose	-	oxidation
43702	25115 ChEBI	malate	-	assimilation
43702	15792 ChEBI	malonate	-	oxidation
43702	17306 ChEBI	maltose	-	assimilation
43702	17306 ChEBI	maltose	-	oxidation
43702	28053 ChEBI	melibiose	-	oxidation
43702	320055 ChEBI	methyl beta-D-glucopyranoside	-	oxidation
43702	51850 ChEBI	methyl pyruvate	-	oxidation
43702	75146 ChEBI	monomethyl succinate	+	oxidation
43702	17268 ChEBI	myo-inositol	-	oxidation
43702	28037 ChEBI	N-acetylgalactosamine	-	oxidation
43702	506227 ChEBI	N-acetylglucosamine	-	assimilation
43702	506227 ChEBI	N-acetylglucosamine	-	oxidation
43702	17632 ChEBI	nitrate	-	reduction
43702	18401 ChEBI	phenylacetate	-	assimilation
43702	50048 ChEBI	phenylethylamine	-	oxidation
43702	32032 ChEBI	potassium gluconate	-	assimilation
43702	17272 ChEBI	propionate	-	oxidation
43702	17148 ChEBI	putrescine	-	oxidation
43702	26490 ChEBI	quinate	-	oxidation
43702	16634 ChEBI	raffinose	-	oxidation
43702	15963 ChEBI	ribitol	-	oxidation
43702	41865 ChEBI	sebacic acid	-	oxidation
43702	53258 ChEBI	sodium citrate	-	assimilation
43702	28017 ChEBI	starch	-	hydrolysis
43702	143136 ChEBI	succinamate	+	oxidation
43702	30031 ChEBI	succinate	-	oxidation
43702	17992 ChEBI	sucrose	-	oxidation
43702	17748 ChEBI	thymidine	-	oxidation
43702	27082 ChEBI	trehalose	-	oxidation
43702	32528 ChEBI	turanose	-	oxidation
43702	53424 ChEBI	tween 20	-	hydrolysis
43702	53423 ChEBI	tween 40	-	oxidation
43702	53426 ChEBI	tween 80	-	hydrolysis
43702	53426 ChEBI	tween 80	-	oxidation
43702	18186 ChEBI	tyrosine	-	hydrolysis
43702	16199 ChEBI	urea	-	hydrolysis
43702	16704 ChEBI	uridine	-	oxidation
43702	27248 ChEBI	urocanic acid	-	oxidation
43702	17151 ChEBI	xylitol	-	oxidation

Metabolite production

@ref	Chebi-ID	Metabolite	Production
43702	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
43702	acid phosphatase	+	3.1.3.2
43702	alkaline phosphatase	+	3.1.3.1
43702	alpha-chymotrypsin	+	3.4.21.1
43702	alpha-fucosidase	-	3.2.1.51
43702	alpha-galactosidase	-	3.2.1.22
43702	alpha-glucosidase	-	3.2.1.20
43702	alpha-mannosidase	-	3.2.1.24
43702	arginine dihydrolase	-	3.5.3.6
43702	beta-galactosidase	-	3.2.1.23
43702	beta-glucosidase	-	3.2.1.21
43702	beta-glucuronidase	-	3.2.1.31
43702	catalase	+	1.11.1.6
43702	cystine arylamidase	+	3.4.11.3
43702	cytochrome oxidase	+	1.9.3.1
43702	esterase (C 4)	+
43702	esterase Lipase (C 8)	+
43702	leucine arylamidase	+	3.4.11.1
43702	lipase (C 14)	+
43702	N-acetyl-beta-glucosaminidase	-	3.2.1.52
43702	naphthol-AS-BI-phosphohydrolase	+
43702	valine arylamidase	+

Fatty acid profile

Metadata FA analysis

@ref

43702

Fatty acid	Percentage
C18:1ω7c / C18:1ω6c	62
C16:0	9.5
C14:0 3OH / C16:1 iso	7.1
C18:0 iso	6.1
C16:0 3OH	5
C16:1ω7c / C16:1ω6c	2.9
C18:1 2OH	2.8
C18:0	1.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Estuary

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
43702	The Asan estuary	Asan	Republic of Korea	KOR	Asia	36.944	126.99 36.944/126.99
64809	sediment from estuary of river Asan	river Asan	Republic of Korea	KOR	Asia	36.9447	126.991 36.9447/126.991
67770	Estuary of Asan in South Korea

Taxonmaps

69479

Global distribution of 16S sequence KT619125 (>99% sequence identity) for Arenimonas aestuarii subclade from Microbeatlas

Aquatic Samples	513
Soil Samples	823
Animal Samples	122
Plant Samples	23
Total Samples	1481

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
64809	1	Risk group (German classification)

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
64809	Arenimonas aestuarii strain S2-21 16S ribosomal RNA gene, partial sequence	KT619125	1493		1708347

GC content

@ref	GC-content (mol%)	Method
43702	62.2	Thermal denaturation, fluorometry
67770	62.2	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Arenimonas caeni sp. nov., isolated from activated sludge.	Liu H, Ren L, Lu P, Sun L, Zhu G	Int J Syst Evol Microbiol	10.1099/ijsem.0.002937	2018
Phylogeny	Arenimonas soli sp. nov., isolated from saline-alkaline soil.	Xu L, Sun JQ, Liu X, Liu XZ, Qiao MQ, Wu XL	Int J Syst Evol Microbiol	10.1099/ijsem.0.002026	2017
Phylogeny	Arenimonas alkanexedens sp. nov., isolated from a frozen soil sample.	Zhu J, Wang HM, Zhang Q, Dong WW, Kong DL, Wang YW, Song JL, Jiang X, Zhao SM, Zhang W, Ruan ZY	Antonie Van Leeuwenhoek	10.1007/s10482-017-0876-9	2017
Phylogeny	Arenimonas aestuarii sp. nov., isolated from estuary sediment.	Jeong HI, Jin HM, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijsem.0.000913	2016

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43702	Hye Im Jeong, Hyun Mi Jin, Che Ok Jeon: Arenimonas aestuarii sp. nov., isolated from estuary sediment. IJSEM 66: 1527 - 1532 2016 ( DOI 10.1099/ijsem.0.000913 , PubMed 26801058 )
#64809	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 107087
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Arenimonas aestuarii (KACC 18504, JCM 31129, DSM 107087)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Halophily

Metabolite utilization

Metabolite production

Enzymes

Fatty acid profile

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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