Name: Arenimonas aestuarii S2-21
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140875

Type strain:

Species: Arenimonas aestuarii

Strain Designation: S2-21

Culture col. no.: KACC 18504, JCM 31129, DSM 107087

Strain history: C. O. Jeon; Chung-Ang Univ., South Korea; S2-21.

NCBI tax ID(s): 1708347 (species)

SI-ID 404069

DSM 107087

Section

Arenimonas aestuarii S2-21 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from The Asan estuary.

colony-forming
Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Lysobacterales*
	Family	*Lysobacteraceae*
	Genus	*Arenimonas*
	Species	**Arenimonas aestuarii**
	Full Scientific Name (LPSN)	Arenimonas aestuarii Jeong et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43702]	Gram stain	negative

[Ref.: #43702]	Cell length	1-1.7 µm

[Ref.: #43702]	Cell width	0.3-0.4 µm

[Ref.: #43702]	Cell shape	rod-shaped

[Ref.: #43702]	Motility	no

[Ref.: #43702]	Colony color	White
[Ref.: #43702]	Colony shape	circular
[Ref.: #43702]	Cultivation medium used	R2A agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43702]

Culture medium

Reasoner's 2A agar (R2A)

[Ref.: #43702]

Culture medium growth

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Culture medium

Trypticase Soy Agar (TSA)

[Ref.: #43702]

Culture medium growth

[Ref.: #64809]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #64809]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #43702]	growth	15-40 °C
[Ref.: #43702]	optimum	25-30 °C
[Ref.: #64809]	growth	28 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #43702]	Temperature range	mesophilic
[Ref.: #64809]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43702]			optimum	7
[Ref.: #43702]			growth	7-8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43702]

Oxygen tolerance

aerobe

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Halophily / tolerance level

non-halophilic

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43702]		NaCl		growth	0-2	%(w/v)
[Ref.: #43702]		NaCl		optimum	0	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43702]	2,3-butanediol ChEBI	-	oxidation
[Ref.: #43702]	2-hydroxybutyrate ChEBI	-	oxidation
[Ref.: #43702]	2-oxobutanoate ChEBI	-	oxidation
[Ref.: #43702]	2-oxoglutarate ChEBI	-	oxidation
[Ref.: #43702]	2-oxopentanoate ChEBI	-	oxidation
[Ref.: #43702]	4-hydroxybutyrate ChEBI	-	oxidation
[Ref.: #43702]	4-hydroxyphenylacetic acid ChEBI	-	oxidation
[Ref.: #43702]	acetate ChEBI	-	oxidation
[Ref.: #43702]	adipate ChEBI	-	assimilation
[Ref.: #43702]	alpha-cyclodextrin ChEBI	+	oxidation
[Ref.: #43702]	alpha-D-glucose ChEBI	-	oxidation
[Ref.: #43702]	alpha-lactose ChEBI	-	oxidation
[Ref.: #43702]	beta-hydroxybutyrate ChEBI	+	oxidation
[Ref.: #43702]	bromosuccinate ChEBI	-	oxidation
[Ref.: #43702]	casein	+	hydrolysis
[Ref.: #43702]	cellobiose ChEBI	-	oxidation
[Ref.: #43702]	cis-aconitate ChEBI	-	oxidation
[Ref.: #43702]	citrate ChEBI	-	oxidation
[Ref.: #43702]	D-alanine ChEBI	-	oxidation
[Ref.: #43702]	D-arabitol ChEBI	-	oxidation
[Ref.: #43702]	D-fructose ChEBI	-	oxidation
[Ref.: #43702]	D-galactonic acid lactone ChEBI	-	oxidation
[Ref.: #43702]	D-galactose ChEBI	-	oxidation
[Ref.: #43702]	D-galacturonic acid ChEBI	-	oxidation
[Ref.: #43702]	D-gluconate ChEBI	-	oxidation
[Ref.: #43702]	D-glucosaminic acid ChEBI	-	oxidation
[Ref.: #43702]	D-glucose ChEBI	-	assimilation
[Ref.: #43702]	D-glucose 6-phosphate ChEBI	-	oxidation
[Ref.: #43702]	D-glucuronate ChEBI	-	oxidation
[Ref.: #43702]	D-mannitol ChEBI	-	assimilation
[Ref.: #43702]	D-mannitol ChEBI	-	oxidation
[Ref.: #43702]	D-mannose ChEBI	-	assimilation
[Ref.: #43702]	D-mannose ChEBI	-	oxidation
[Ref.: #43702]	D-psicose ChEBI	-	oxidation
[Ref.: #43702]	D-saccharate ChEBI	-	oxidation
[Ref.: #43702]	D-serine ChEBI	-	oxidation
[Ref.: #43702]	D-sorbitol ChEBI	-	oxidation
[Ref.: #43702]	decanoate ChEBI	-	assimilation
[Ref.: #43702]	dextrin ChEBI	-	oxidation
[Ref.: #43702]	DL-carnitine ChEBI	-	oxidation
[Ref.: #43702]	erythritol ChEBI	-	oxidation
[Ref.: #43702]	esculin ChEBI	-	hydrolysis
[Ref.: #43702]	ethanolamine ChEBI	-	oxidation
[Ref.: #43702]	formate ChEBI	-	oxidation
[Ref.: #43702]	gamma-aminobutyric acid ChEBI	+	oxidation
[Ref.: #43702]	gelatin ChEBI	+	hydrolysis
[Ref.: #43702]	gentiobiose ChEBI	-	oxidation
[Ref.: #43702]	glucose 1-phosphate ChEBI	-	oxidation
[Ref.: #43702]	glucuronamide ChEBI	-	oxidation
[Ref.: #43702]	glycerol ChEBI	-	oxidation
[Ref.: #43702]	glycerol 1-phosphate ChEBI	-	oxidation
[Ref.: #43702]	glycogen ChEBI	+	oxidation
[Ref.: #43702]	glycyl L-aspartic acid ChEBI	+	oxidation
[Ref.: #43702]	glycyl-l-glutamate ChEBI	+	oxidation
[Ref.: #43702]	hydroxyproline ChEBI	+	oxidation
[Ref.: #43702]	inosine ChEBI	-	oxidation
[Ref.: #43702]	itaconate ChEBI	-	oxidation
[Ref.: #43702]	L-alaninamide ChEBI	+	oxidation
[Ref.: #43702]	L-alanine ChEBI	+	oxidation
[Ref.: #43702]	L-alanylglycine ChEBI	+	oxidation
[Ref.: #43702]	L-arabinose ChEBI	-	assimilation
[Ref.: #43702]	L-arabinose ChEBI	-	oxidation
[Ref.: #43702]	L-asparagine ChEBI	-	oxidation
[Ref.: #43702]	L-aspartate ChEBI	-	oxidation
[Ref.: #43702]	L-fructose ChEBI	-	oxidation
[Ref.: #43702]	L-glutamate ChEBI	-	oxidation
[Ref.: #43702]	L-histidine ChEBI	-	oxidation
[Ref.: #43702]	L-leucine ChEBI	-	oxidation
[Ref.: #43702]	L-ornithine ChEBI	-	oxidation
[Ref.: #43702]	L-phenylalanine ChEBI	-	oxidation
[Ref.: #43702]	L-proline ChEBI	+	oxidation
[Ref.: #43702]	L-pyroglutamic acid ChEBI	-	oxidation
[Ref.: #43702]	L-rhamnose ChEBI	-	oxidation
[Ref.: #43702]	L-serine ChEBI	-	oxidation
[Ref.: #43702]	L-threonine ChEBI	-	oxidation
[Ref.: #43702]	lactate ChEBI	-	oxidation
[Ref.: #43702]	lactulose ChEBI	-	oxidation
[Ref.: #43702]	malate ChEBI	-	assimilation
[Ref.: #43702]	malonate ChEBI	-	oxidation
[Ref.: #43702]	maltose ChEBI	-	assimilation
[Ref.: #43702]	maltose ChEBI	-	oxidation
[Ref.: #43702]	melibiose ChEBI	-	oxidation
[Ref.: #43702]	methyl beta-D-glucopyranoside ChEBI	-	oxidation
[Ref.: #43702]	methyl pyruvate ChEBI	-	oxidation
[Ref.: #43702]	monomethyl succinate ChEBI	+	oxidation
[Ref.: #43702]	myo-inositol ChEBI	-	oxidation
[Ref.: #43702]	N-acetylgalactosamine ChEBI	-	oxidation
[Ref.: #43702]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #43702]	N-acetylglucosamine ChEBI	-	oxidation
[Ref.: #43702]	nitrate ChEBI	-	reduction
[Ref.: #43702]	phenylacetate ChEBI	-	assimilation
[Ref.: #43702]	phenylethylamine ChEBI	-	oxidation
[Ref.: #43702]	potassium gluconate ChEBI	-	assimilation
[Ref.: #43702]	propionate ChEBI	-	oxidation
[Ref.: #43702]	putrescine ChEBI	-	oxidation
[Ref.: #43702]	quinate ChEBI	-	oxidation
[Ref.: #43702]	raffinose ChEBI	-	oxidation
[Ref.: #43702]	ribitol ChEBI	-	oxidation
[Ref.: #43702]	sebacic acid ChEBI	-	oxidation
[Ref.: #43702]	sodium citrate ChEBI	-	assimilation
[Ref.: #43702]	starch ChEBI	-	hydrolysis
[Ref.: #43702]	succinamate ChEBI	+	oxidation
[Ref.: #43702]	succinate ChEBI	-	oxidation
[Ref.: #43702]	sucrose ChEBI	-	oxidation
[Ref.: #43702]	thymidine ChEBI	-	oxidation
[Ref.: #43702]	trehalose ChEBI	-	oxidation
[Ref.: #43702]	turanose ChEBI	-	oxidation
[Ref.: #43702]	tween 20 ChEBI	-	hydrolysis
[Ref.: #43702]	tween 40 ChEBI	-	oxidation
[Ref.: #43702]	tween 80 ChEBI	-	hydrolysis
[Ref.: #43702]	tween 80 ChEBI	-	oxidation
[Ref.: #43702]	tyrosine ChEBI	-	hydrolysis
[Ref.: #43702]	urea ChEBI	-	hydrolysis
[Ref.: #43702]	uridine ChEBI	-	oxidation
[Ref.: #43702]	urocanic acid ChEBI	-	oxidation
[Ref.: #43702]	xylitol ChEBI	-	oxidation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43702]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43702]	acid phosphatase	+	3.1.3.2
[Ref.: #43702]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43702]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #43702]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43702]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43702]	alpha-glucosidase	-	3.2.1.20
[Ref.: #43702]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43702]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43702]	beta-galactosidase	-	3.2.1.23
[Ref.: #43702]	beta-glucosidase	-	3.2.1.21
[Ref.: #43702]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43702]	catalase	+	1.11.1.6
[Ref.: #43702]	cystine arylamidase	+	3.4.11.3
[Ref.: #43702]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43702]	esterase (C 4)	+
[Ref.: #43702]	esterase Lipase (C 8)	+
[Ref.: #43702]	leucine arylamidase	+	3.4.11.1
[Ref.: #43702]	lipase (C 14)	+
[Ref.: #43702]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #43702]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43702]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43702]

Fatty acid	Percentage
C18:1ω7c / C18:1ω6c	62
C16:0	9.5
C14:0 3OH / C16:1 iso	7.1
C18:0 iso	6.1
C16:0 3OH	5
C16:1ω7c / C16:1ω6c	2.9
C18:1 2OH	2.8
C18:0	1.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43702]	Sample type/isolated from	The Asan estuary
[Ref.: #43702]	Geographic location (country and/or sea, region)	Asan
[Ref.: #43702]	Country	Republic of Korea
[Ref.: #43702]	Country ISO 3 Code	KOR
[Ref.: #43702]	Continent	Asia
[Ref.: #43702]	Geographic location	36.9440°/126.9900°

[Ref.: #64809]	Sample type/isolated from	sediment from estuary of river Asan
[Ref.: #64809]	Geographic location (country and/or sea, region)	river Asan
[Ref.: #64809]	Country	Republic of Korea
[Ref.: #64809]	Country ISO 3 Code	KOR
[Ref.: #64809]	Continent	Asia
[Ref.: #64809]	Geographic location	36.9447°/126.9910°

[Ref.: #67770]	Sample type/isolated from	Estuary of Asan in South Korea
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Estuary

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KT619125 (>99% sequence identity) for Arenimonas aestuarii subclade from Microbeatlas

Aquatic Samples	513
Soil Samples	823
Animal Samples	122
Plant Samples	23
Total Samples	1481

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #64809]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #64809]	Arenimonas aestuarii strain S2-21 16S ribosomal RNA gene, partial sequence	KT619125	1493	ENA	1708347 tax ID

[Ref.: #43702]	GC-content	62.2 mol%	Thermal denaturation, fluorometry
[Ref.: #67770]	GC-content	62.2 mol%	thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #64809]

Culture collection no.

KACC 18504, JCM 31129, DSM 107087

[Ref.: #96804]

SI-ID 404069

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Arenimonas caeni sp. nov., isolated from activated sludge.	Liu H, Ren L, Lu P, Sun L, Zhu G	Int J Syst Evol Microbiol	10.1099/ijsem.0.002937	2018	*
Phylogeny	Arenimonas soli sp. nov., isolated from saline-alkaline soil.	Xu L, Sun JQ, Liu X, Liu XZ, Qiao MQ, Wu XL	Int J Syst Evol Microbiol	10.1099/ijsem.0.002026	2017	*
Phylogeny	Arenimonas alkanexedens sp. nov., isolated from a frozen soil sample.	Zhu J, Wang HM, Zhang Q, Dong WW, Kong DL, Wang YW, Song JL, Jiang X, Zhao SM, Zhang W, Ruan ZY	Antonie Van Leeuwenhoek	10.1007/s10482-017-0876-9	2017	*
Phylogeny	Arenimonas aestuarii sp. nov., isolated from estuary sediment.	Jeong HI, Jin HM, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijsem.0.000913	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43702

Hye Im Jeong, Hyun Mi Jin, Che Ok Jeon: Arenimonas aestuarii sp. nov., isolated from estuary sediment. IJSEM 66: 1527 - 1532 2016 ( DOI 10.1099/ijsem.0.000913 , PubMed 26801058 )

#64809

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 107087

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#96804

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID404069.1 )

* These data were automatically processed and therefore are not curated

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