Name: Paenibacillus periandrae PM10
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140866

Type strain:

Species: Paenibacillus periandrae

Strain Designation: PM10

Culture col. no.: LMG 28691, CECT 8827

NCBI tax ID(s): 1761741 (species)

Section

Paenibacillus periandrae PM10 is an aerobe, spore-forming, Gram-variable bacterium that forms circular colonies and was isolated from Root nodules of Periandra mediterranea.

colony-forming
Gram-variable
motile
rod-shaped
spore-forming
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Paenibacillus*
	Species	**Paenibacillus periandrae**
	Full Scientific Name (LPSN)	Paenibacillus periandrae Menéndez et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43687]	Gram stain	variable

[Ref.: #43687]	Cell length	3.3-4.8 µm

[Ref.: #43687]	Cell width	0.9-1 µm

[Ref.: #43687]	Cell shape	rod-shaped

[Ref.: #43687]	Motility	yes

[Ref.: #43687]	Flagellum arrangement	peritrichous

[Ref.: #43687]	Colony size	1-3 mm
[Ref.: #43687]	Colony color	White-cream
[Ref.: #43687]	Colony shape	circular
[Ref.: #43687]	Incubation period	2 days
[Ref.: #43687]	Cultivation medium used	TSA agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43687]

Culture medium

Nutrient agar (NA)

[Ref.: #43687]

Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #43687]			growth	15-37 °C
[Ref.: #43687]			optimum	30 °C

[Ref.: #43687]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #43687]			optimum	7
[Ref.: #43687]			growth	6-8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43687]

Oxygen tolerance

aerobe

[Ref.: #43687]	Spore description	Oval central or sub-terminal endospores are formed in swollen sporangia
[Ref.: #43687]	Type of spore	endospore
[Ref.: #43687]	Ability of spore formation	yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43687]		NaCl		growth	0-2	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43687]	2-dehydro-D-gluconate ChEBI	-	assimilation
[Ref.: #43687]	5-dehydro-D-gluconate ChEBI	-	assimilation
[Ref.: #43687]	adipate ChEBI	-	assimilation
[Ref.: #43687]	amygdalin ChEBI	+	builds acid from
[Ref.: #43687]	arabinitol ChEBI	-	builds acid from
[Ref.: #43687]	arbutin ChEBI	+	builds acid from
[Ref.: #43687]	casein	+	hydrolysis
[Ref.: #43687]	cellobiose ChEBI	+	builds acid from
[Ref.: #43687]	citrate ChEBI	-	assimilation
[Ref.: #43687]	D-arabinose ChEBI	-	builds acid from
[Ref.: #43687]	D-fructose ChEBI	+	builds acid from
[Ref.: #43687]	D-fucose ChEBI	-	builds acid from
[Ref.: #43687]	D-galactose ChEBI	+	builds acid from
[Ref.: #43687]	D-glucose ChEBI	+	builds acid from
[Ref.: #43687]	D-mannitol ChEBI	+	builds acid from
[Ref.: #43687]	D-mannose ChEBI	+	builds acid from
[Ref.: #43687]	D-ribose ChEBI	+/-	builds acid from
[Ref.: #43687]	D-tagatose ChEBI	-	builds acid from
[Ref.: #43687]	D-xylose ChEBI	+/-	builds acid from
[Ref.: #43687]	decanoate ChEBI	-	assimilation
[Ref.: #43687]	erythritol ChEBI	-	builds acid from
[Ref.: #43687]	esculin ChEBI	+	hydrolysis
[Ref.: #43687]	galactitol ChEBI	-	builds acid from
[Ref.: #43687]	gelatin ChEBI	-	hydrolysis
[Ref.: #43687]	gentiobiose ChEBI	-	builds acid from
[Ref.: #43687]	gluconate ChEBI	-	assimilation
[Ref.: #43687]	glucose ChEBI	+	assimilation
[Ref.: #43687]	glucose ChEBI	+	builds acid from
[Ref.: #43687]	glycerol ChEBI	-	builds acid from
[Ref.: #43687]	glycogen ChEBI	-	builds acid from
[Ref.: #43687]	inulin ChEBI	-	builds acid from
[Ref.: #43687]	L-arabinose ChEBI	+	assimilation
[Ref.: #43687]	L-arabinose ChEBI	+/-	builds acid from
[Ref.: #43687]	L-fucose ChEBI	-	builds acid from
[Ref.: #43687]	L-lyxose ChEBI	-	builds acid from
[Ref.: #43687]	L-malate ChEBI	+	assimilation
[Ref.: #43687]	L-rhamnose ChEBI	+/-	builds acid from
[Ref.: #43687]	L-sorbose ChEBI	-	builds acid from
[Ref.: #43687]	L-xylose ChEBI	-	builds acid from
[Ref.: #43687]	lactose ChEBI	+	builds acid from
[Ref.: #43687]	maltose ChEBI	+	assimilation
[Ref.: #43687]	maltose ChEBI	+	builds acid from
[Ref.: #43687]	mannitol ChEBI	+	assimilation
[Ref.: #43687]	mannose ChEBI	-	assimilation
[Ref.: #43687]	melezitose ChEBI	-	builds acid from
[Ref.: #43687]	melibiose ChEBI	+	builds acid from
[Ref.: #43687]	methyl alpha-D-glucopyranoside ChEBI	+	builds acid from
[Ref.: #43687]	methyl alpha-D-mannoside ChEBI	+/-	builds acid from
[Ref.: #43687]	methyl alpha-D-xylopyranoside	+/-	builds acid from
[Ref.: #43687]	myo-inositol ChEBI	+/-	builds acid from
[Ref.: #43687]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #43687]	N-acetylglucosamine ChEBI	+	builds acid from
[Ref.: #43687]	nitrate ChEBI	-	reduction
[Ref.: #43687]	phenylacetate ChEBI	-	assimilation
[Ref.: #43687]	raffinose ChEBI	+	builds acid from
[Ref.: #43687]	ribitol ChEBI	-	builds acid from
[Ref.: #43687]	salicin ChEBI	+	builds acid from
[Ref.: #43687]	sorbitol ChEBI	+	builds acid from
[Ref.: #43687]	starch ChEBI	-	builds acid from
[Ref.: #43687]	starch ChEBI	+/-	hydrolysis
[Ref.: #43687]	sucrose ChEBI	+	builds acid from
[Ref.: #43687]	trehalose ChEBI	+	builds acid from
[Ref.: #43687]	turanose ChEBI	+	builds acid from
[Ref.: #43687]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #43687]	acetoin ChEBI	yes
[Ref.: #43687]	hydrogen sulfide ChEBI	no
[Ref.: #43687]	indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43687]	amylase	+/-
[Ref.: #43687]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43687]	beta-galactosidase	+	3.2.1.23
[Ref.: #43687]	caseinase	+	3.4.21.50
[Ref.: #43687]	catalase	-	1.11.1.6
[Ref.: #43687]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43687]	gelatinase	-
[Ref.: #43687]	lysine decarboxylase	-	4.1.1.18
[Ref.: #43687]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #43687]	phenylalanine deaminase	-	4.3.1.5
[Ref.: #43687]	urease	-	3.5.1.5
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43687]

Fatty acid	Percentage
C18:1ω7c	81.1
C14:0 3OH / C16:1 iso I	4.8
C18:0 iso	1.6
C12:0	1.5
C16:0	1.2
C16:1ω7c / C16:1ω6c	1.1
C18:0	1.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43687]	Sample type/isolated from	Root nodules of Periandra mediterranea
[Ref.: #43687]	Geographic location (country and/or sea, region)	Brazil
[Ref.: #43687]	Country	Brazil
[Ref.: #43687]	Country ISO 3 Code	BRA
[Ref.: #43687]	Continent	Middle and South America
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Shrub (Scrub)
#Host Body-Site	#Plant	#Root nodule

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KT257095 (>99% sequence identity) for Paenibacillus periandrae subclade from Microbeatlas

Aquatic Samples	23
Soil Samples	258
Animal Samples	14
Plant Samples	42
Total Samples	337

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43687]	16S rRNA gene sequence	KT257095		GenBank

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Paenibacillus periandrae PM10	GCA_022458865	contig	GenBank	1761741 tax ID	*

[Ref.: #43687]

GC-content

52.9 mol%

Thermal denaturation, fluorometry

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Paenibacillus periandrae PM10 NCBI: GCA_022458865.1
[Ref.: #69480]	flagellated	yes	87.253	yes
[Ref.: #69480]	gram-positive	yes	51.493	yes
[Ref.: #69480]	anaerobic	no	98.714	no
[Ref.: #69480]	aerobic	yes	84.001	yes
[Ref.: #69480]	halophile	no	96.655	no
[Ref.: #69480]	spore-forming	yes	92.771	yes
[Ref.: #69480]	motile	yes	86.88	yes
[Ref.: #69480]	glucose-ferment	no	87.356	no
[Ref.: #69480]	thermophile	no	99.76	no
[Ref.: #69480]	glucose-util	yes	90.209	yes

Availability in culture collections External links

[Ref.: #43687]

Culture collection no.

LMG 28691, CECT 8827

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paenibacillus periandrae sp. nov., isolated from nodules of Periandra mediterranea.	Menendez E, Ramirez-Bahena MH, Carro L, Fernandez-Pascual M, Peter Klenk H, Velazquez E, Mateos PF, Peix A, Rita Scotti M	Int J Syst Evol Microbiol	10.1099/ijsem.0.000953	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43687

Esther Menéndez, Martha-Helena Ramírez-Bahena, Lorena Carro, Mercedes Fernández-Pascual, Hans Peter Klenk, Encarna Velázquez, Pedro F. Mateos, Alvaro Peix, Maria Rita Scotti: Paenibacillus periandrae sp. nov., isolated from nodules of Periandra mediterranea. IJSEM 66: 1838 - 1843 2016 ( DOI 10.1099/ijsem.0.000953 , PubMed 26843192 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Paenibacillus periandrae in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF