Name: Mucilaginibacter carri PR0008K
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140863

Type strain:

Species: Mucilaginibacter carri

Strain Designation: PR0008K

Culture col. no.: KACC 17938, NBRC 111539

NCBI tax ID(s): 1211324 (species)

Section

Mucilaginibacter carri PR0008K is an obligate aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from a biofilm growing on the surface of an automobile evaporator.

colony-forming
Gram-negative
rod-shaped
obligate aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Sphingobacteriia*
	Order	*Sphingobacteriales*
	Family	*Sphingobacteriaceae*
	Genus	*Mucilaginibacter*
	Species	**Mucilaginibacter carri**
	Full Scientific Name (LPSN)	Mucilaginibacter carri Kim et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43681]	Gram stain	negative

[Ref.: #43681]	Cell length	2.7-3.2 µm

[Ref.: #43681]	Cell width	0.5-0.8 µm

[Ref.: #43681]	Cell shape	rod-shaped

[Ref.: #43681]	Colony color	Pinkish and shiny
[Ref.: #43681]	Colony shape	circular
[Ref.: #43681]	Incubation period	7 days
[Ref.: #43681]	Cultivation medium used	R2A agar

[Ref.: #43681]	Pigment production	no
[Ref.: #43681]	Pigment name	Flexirubin-type

Information on culture and growth conditions Culture and growth conditions

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Culture medium

LB (Luria-Bertani) MEDIUM

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Culture medium growth

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Culture medium

Nutrient agar (NA)

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Culture medium growth

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Culture medium

Reasoner's 2A agar (R2A)

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Culture medium growth

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Culture medium

Trypticase Soy agar

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Culture medium growth

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Culture medium

MacConkey agar

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Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #43681]			growth	10-40 °C
[Ref.: #43681]			optimum	20 °C

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Temperature range

psychrophilic

	pH	Kind of pH		pH
[Ref.: #43681]			optimum	7
[Ref.: #43681]			growth	5-8

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

obligate aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43681]		NaCl		growth	0-1.5	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43681]	adipate ChEBI	-	assimilation
[Ref.: #43681]	amygdalin ChEBI	-	assimilation
[Ref.: #43681]	amygdalin ChEBI	-	fermentation
[Ref.: #43681]	amygdalin ChEBI	-	oxidation
[Ref.: #43681]	arbutin ChEBI	+/-	assimilation
[Ref.: #43681]	arginine ChEBI	-	hydrolysis
[Ref.: #43681]	casein	+	hydrolysis
[Ref.: #43681]	cellobiose ChEBI	+	assimilation
[Ref.: #43681]	cellulose ChEBI	-	hydrolysis
[Ref.: #43681]	chitin ChEBI	-	hydrolysis
[Ref.: #43681]	D-arabinose ChEBI	+/-	assimilation
[Ref.: #43681]	D-arabitol ChEBI	-	assimilation
[Ref.: #43681]	D-fructose ChEBI	-	assimilation
[Ref.: #43681]	D-fucose ChEBI	-	assimilation
[Ref.: #43681]	D-galactose ChEBI	+/-	assimilation
[Ref.: #43681]	D-glucose ChEBI	+	assimilation
[Ref.: #43681]	D-glucose ChEBI	+	fermentation
[Ref.: #43681]	D-glucose ChEBI	+	oxidation
[Ref.: #43681]	D-lyxose ChEBI	-	assimilation
[Ref.: #43681]	D-mannitol ChEBI	-	assimilation
[Ref.: #43681]	D-mannitol ChEBI	-	fermentation
[Ref.: #43681]	D-mannitol ChEBI	-	oxidation
[Ref.: #43681]	D-mannose ChEBI	+	assimilation
[Ref.: #43681]	D-ribose ChEBI	-	assimilation
[Ref.: #43681]	D-sorbitol ChEBI	-	assimilation
[Ref.: #43681]	D-sorbitol ChEBI	-	fermentation
[Ref.: #43681]	D-sorbitol ChEBI	-	oxidation
[Ref.: #43681]	D-tagatose ChEBI	-	assimilation
[Ref.: #43681]	D-xylose ChEBI	-	assimilation
[Ref.: #43681]	decanoate ChEBI	-	assimilation
[Ref.: #43681]	dna ChEBI	-	hydrolysis
[Ref.: #43681]	erythritol ChEBI	-	assimilation
[Ref.: #43681]	esculin ChEBI	+	assimilation
[Ref.: #43681]	esculin ChEBI	+	hydrolysis
[Ref.: #43681]	galactitol ChEBI	-	assimilation
[Ref.: #43681]	gelatin ChEBI	+	hydrolysis
[Ref.: #43681]	gentiobiose ChEBI	+/-	assimilation
[Ref.: #43681]	glycerol ChEBI	-	assimilation
[Ref.: #43681]	glycogen ChEBI	-	assimilation
[Ref.: #43681]	inulin ChEBI	-	assimilation
[Ref.: #43681]	L-arabinose ChEBI	+/-	assimilation
[Ref.: #43681]	L-arabinose ChEBI	+/-	fermentation
[Ref.: #43681]	L-arabinose ChEBI	+/-	oxidation
[Ref.: #43681]	L-arabitol ChEBI	-	assimilation
[Ref.: #43681]	L-fucose ChEBI	-	assimilation
[Ref.: #43681]	L-rhamnose ChEBI	-	assimilation
[Ref.: #43681]	L-rhamnose ChEBI	-	fermentation
[Ref.: #43681]	L-rhamnose ChEBI	-	oxidation
[Ref.: #43681]	L-sorbose ChEBI	-	assimilation
[Ref.: #43681]	L-xylose ChEBI	-	assimilation
[Ref.: #43681]	lactose ChEBI	+	assimilation
[Ref.: #43681]	malate ChEBI	-	assimilation
[Ref.: #43681]	maltose ChEBI	+	assimilation
[Ref.: #43681]	melezitose ChEBI	-	assimilation
[Ref.: #43681]	melibiose ChEBI	+/-	assimilation
[Ref.: #43681]	melibiose ChEBI	+/-	fermentation
[Ref.: #43681]	melibiose ChEBI	+/-	oxidation
[Ref.: #43681]	methyl alpha-D-glucopyranoside ChEBI	+/-	assimilation
[Ref.: #43681]	methyl alpha-D-mannoside ChEBI	+/-	assimilation
[Ref.: #43681]	methyl beta-D-xylopyranoside ChEBI	-	assimilation
[Ref.: #43681]	myo-inositol ChEBI	-	assimilation
[Ref.: #43681]	myo-inositol ChEBI	-	fermentation
[Ref.: #43681]	myo-inositol ChEBI	-	oxidation
[Ref.: #43681]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #43681]	nitrate ChEBI	-	reduction
[Ref.: #43681]	phenylacetate ChEBI	-	assimilation
[Ref.: #43681]	potassium 2-dehydro-D-gluconate	-	assimilation
[Ref.: #43681]	potassium 5-dehydro-D-gluconate	-	assimilation
[Ref.: #43681]	potassium gluconate ChEBI	-	assimilation
[Ref.: #43681]	raffinose ChEBI	-	assimilation
[Ref.: #43681]	ribitol ChEBI	-	assimilation
[Ref.: #43681]	salicin ChEBI	+/-	assimilation
[Ref.: #43681]	sodium citrate ChEBI	-	assimilation
[Ref.: #43681]	starch ChEBI	+	hydrolysis
[Ref.: #43681]	starch ChEBI	+/-	assimilation
[Ref.: #43681]	sucrose ChEBI	+	fermentation
[Ref.: #43681]	sucrose ChEBI	+	oxidation
[Ref.: #43681]	sucrose ChEBI	+/-	assimilation
[Ref.: #43681]	trehalose ChEBI	+/-	assimilation
[Ref.: #43681]	turanose ChEBI	+/-	assimilation
[Ref.: #43681]	xylitol ChEBI	-	assimilation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #43681]	acetoin ChEBI	yes
[Ref.: #43681]	hydrogen sulfide ChEBI	no
[Ref.: #43681]	indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43681]	acid phosphatase	+	3.1.3.2
[Ref.: #43681]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43681]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43681]	alpha-fucosidase	+	3.2.1.51
[Ref.: #43681]	alpha-galactosidase	+	3.2.1.22
[Ref.: #43681]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43681]	alpha-mannosidase	+	3.2.1.24
[Ref.: #43681]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43681]	beta-galactosidase	+	3.2.1.23
[Ref.: #43681]	beta-glucosidase	+	3.2.1.21
[Ref.: #43681]	beta-glucuronidase	+	3.2.1.31
[Ref.: #43681]	catalase	+	1.11.1.6
[Ref.: #43681]	cystine arylamidase	+	3.4.11.3
[Ref.: #43681]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43681]	esterase (C 4)	+
[Ref.: #43681]	esterase Lipase (C 8)	+
[Ref.: #43681]	leucine arylamidase	+	3.4.11.1
[Ref.: #43681]	lipase (C 14)	-
[Ref.: #43681]	lysine decarboxylase	-	4.1.1.18
[Ref.: #43681]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #43681]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43681]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #43681]	trypsin	-	3.4.21.4
[Ref.: #43681]	tryptophan deaminase	-	4.1.99.1
[Ref.: #43681]	urease	-	3.5.1.5
[Ref.: #43681]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43681]

Fatty acid	Percentage	ECL
C15:0 iso	44.67
C15:0 iso 2OH / C16:1ω7c	16.38
C17:0 iso 3OH	7.44
C15:0	6.32
C16:0	4.67
ECL 13.565	4.17	13565
C18:1ω9c	2
C17:1 iso ω9c	1.56
ECL 16.582	1.03	16582
C16:1ω5c	0.94
C15:1ω6c	0.92
C14:0	0.85
C17:0 iso	0.74
C15:0 anteiso	0.67
C17:1ω8c	0.65
C17:0	0.44
ECL 11.543	0.41	11543
C16:0 3OH	0.41
C17:0 3OH	0.37
C16:0 iso 3OH	0.34
C15:0 2OH	0.27
C18:1ω6c	0.27
C15:1H iso / C13:0 3OH	0.19
C16:0 iso	0.15
C17:0 anteiso	0.15

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43681]	Sample type/isolated from	a biofilm growing on the surface of an automobile evaporator
[Ref.: #43681]	Geographic location (country and/or sea, region)	South Korea
[Ref.: #43681]	Country	Republic of Korea
[Ref.: #43681]	Country ISO 3 Code	KOR
[Ref.: #43681]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Industrial	#Engineered product
#Environmental	#Biofilm	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JX089330 (>99% sequence identity) for Mucilaginibacter carri subclade from Microbeatlas

Aquatic Samples	177
Soil Samples	177
Animal Samples	242
Plant Samples	223
Total Samples	819

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43681]	16S rRNA gene sequence	JX089330		GenBank

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GC-content

47.4 mol%

real time PCR (RTD-PCR)

Availability in culture collections External links

[Ref.: #43681]

Culture collection no.

KACC 17938, NBRC 111539

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Mucilaginibacter segetis sp. nov., Isolated from Soil.	Li W, Ten LN, Kim MK, Lee SY, Kang IK, Jung HY	Curr Microbiol	10.1007/s00284-021-02495-9	2021	*
Phylogeny	Mucilaginibacter amnicola sp. nov., isolated from a freshwater creek.	Chen WM, Hsieh TY, Sheu SY	Int J Syst Evol Microbiol	10.1099/ijsem.0.002518	2017	*
Phylogeny	Mucilaginibacter carri sp. nov., isolated from a car air conditioning system.	Kim DU, Lee H, Kim H, Kim SG, Park SY, Ka JO	Int J Syst Evol Microbiol	10.1099/ijsem.0.000938	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43681

Dong-Uk Kim, Hyosun Lee, Hyun Kim, Song-Gun Kim, So Yoon Park, Jong-Ok Ka: Mucilaginibacter carri sp. nov., isolated from a car air conditioning system. IJSEM 66: 1754 - 1759 2016 ( DOI 10.1099/ijsem.0.000938 , PubMed 26827708 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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