Shewanella indica (DSM 23486, BCC 41031, KCTC 23171)

Name: Shewanella indica (DSM 23486, BCC 41031, KCTC 23171)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 14086

Type strain

Strain Designation KJW27

Culture col. no. DSM 23486 BCC 41031 KCTC 23171 NCIM 5388 KJW27

NCBI tax ID(s) 768528

Special Collections DSMZ KCTC

History DSMZ <- Y. S. Shouche, NCCS Complex, Univ. of Pune Campus, India; KJW27 <- P. Verma, NCCS

Links

Shewanella indica KJW27 is a bacterium that was isolated from marine subsurface sediment from 10.4 m water depth.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 393357

NCIM 5388

@ref 20215

Last LPSN update 2026-05-29 08:28:12

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Alteromonadales

Family Shewanellaceae

Genus Shewanella

Species Shewanella indica

Full scientific name Shewanella indica Verma et al. 2011

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	99.908
125438	negative	98

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	facultative anaerobe	91.867

Spore formation

@ref	Spore formation	Confidence
125439		99.97

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
17226	marine subsurface sediment from 10.4 m water depth	Karnataka, Karwar district, Arabian Sea	India	IND	Asia

Taxonmaps

69479

Global distribution of 16S sequence HM016084 (>99% sequence identity) for Shewanella from Microbeatlas

Aquatic Samples	423
Soil Samples	47
Animal Samples	2622
Plant Samples	24
Total Samples	3116

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
17226	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM4242986v1 assembly for Shewanella indica KCTC 23171	contig	GCA_042429865			768528	68.63
66792	ASM283697v1 assembly for Shewanella indica KJW27	scaffold	GCA_002836975	768528.4	2848249004	768528	67.99
66792	ASM1465211v1 assembly for Shewanella indica KCTC 23171	scaffold	GCA_014652115	768528.6	8115671479	768528	62.18

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
17226	Shewanella indica strain KJW27 16S ribosomal RNA gene, partial sequence	HM016084	1500	768528
124043	Shewanella indica strain KCTC 23171 16S ribosomal RNA gene, partial sequence.	MT759892	1341	768528
124043	Shewanella indica strain KCTC 23171 16S ribosomal RNA gene, partial sequence.	MT758093	1341	768528

GC content

@ref	GC-content (mol%)	Method
17226	51.2	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM4242986v1 assembly for Shewanella indica KCTC 23171
NCBI: GCA_042429865

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	91.87	no
125439	gram_stain	BacteriaNetⓘ	negative	99.91	no
125439	motility	BacteriaNetⓘ	yes	85.89	no
125439	spore_formation	BacteriaNetⓘ	no	99.97	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Shewanella indica KJW27
NCBI: GCA_002836975.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.00	no
125438	anaerobic	anaerobicⓘ	no	94.35	no
125438	aerobic	aerobicⓘ	yes	57.99	no
125438	spore-forming	spore-formingⓘ	no	89.70	no
125438	thermophilic	thermophileⓘ	no	98.50	no
125438	flagellated	motile2+ⓘ	yes	87.73	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Shewanella dokdonensis sp. nov., isolated from seawater.	Sung HR, Yoon JH, Ghim SY	Int J Syst Evol Microbiol	10.1099/ijs.0.032995-0	2011
Phylogeny	Shewanella indica sp. nov., isolated from sediment of the Arabian Sea.	Verma P, Pandey PK, Gupta AK, Kim HJ, Baik KS, Seong CN, Patole MS, Shouche YS	Int J Syst Evol Microbiol	10.1099/ijs.0.026310-0	2010

References

#17226	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23486
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Shewanella indica (DSM 23486, BCC 41031, KCTC 23171)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_042429865

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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