Name: Shewanella indica KJW27
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 14086

Type strain:

Species: Shewanella indica

Strain Designation: KJW27

Culture col. no.: DSM 23486, BCC 41031, KCTC 23171, NCIM 5388

Strain history: <- Y. S. Shouche, NCCS Complex, Univ. of Pune Campus, India; KJW27 <- P. Verma, NCCS

NCBI tax ID(s): 768528 (species)

Section

Shewanella indica KJW27 is a motile bacterium that was isolated from marine subsurface sediment from 10.4 m water depth.

motile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Shewanellaceae*
	Genus	*Shewanella*
	Species	**Shewanella indica**
	Full Scientific Name (LPSN)	Shewanella indica Verma et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.991

[Ref.: #69480]	Motility	yes Confidence in %98.898

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Ability of spore formation

no Confidence in %99.82

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17226]	Sample type/isolated from	marine subsurface sediment from 10.4 m water depth
[Ref.: #17226]	Geographic location (country and/or sea, region)	Karnataka, Karwar district, Arabian Sea
[Ref.: #17226]	Country	India
[Ref.: #17226]	Country ISO 3 Code	IND
[Ref.: #17226]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HM016084 (>99% sequence identity) for Shewanella from Microbeatlas

Aquatic Samples	423
Soil Samples	47
Animal Samples	2622
Plant Samples	24
Total Samples	3116

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17226]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17226]	Shewanella indica strain KJW27 16S ribosomal RNA gene, partial sequence	HM016084	1500	ENA	768528 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Shewanella indica KJW27	GCA_002836975	scaffold	GenBank	768528 tax ID	*
[Ref.: #66792]	Shewanella indica KCTC 23171	GCA_014652115	scaffold	GenBank	768528 tax ID	*
[Ref.: #66792]	Shewanella indica strain KCTC 23171	768528.6	wgs	PATRIC	768528 tax ID	*
[Ref.: #66792]	Shewanella indica KJW27	2848249004	draft	JGI IMG/M	768528 tax ID	*

[Ref.: #17226]

GC-content

51.2 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Shewanella indica strain KCTC 23171 PATRIC: 768528.7
[Ref.: #69481]	spore-forming	no	74	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Shewanella indica KJW27 NCBI: GCA_002836975.1
[Ref.: #69480]	flagellated	yes	94.682	no
[Ref.: #69480]	gram-positive	no	98.967	no
[Ref.: #69480]	anaerobic	no	94.439	no
[Ref.: #69480]	halophile	no	61.972	no
[Ref.: #69480]	spore-forming	no	96.012	no
[Ref.: #69480]	thermophile	no	99.5	no
[Ref.: #69480]	glucose-util	yes	88.294	no
[Ref.: #69480]	aerobic	yes	52.661	no
[Ref.: #69480]	motile	yes	93.23	no
[Ref.: #69480]	glucose-ferment	no	67.045	no

Availability in culture collections External links

[Ref.: #17226]

Culture collection no.

DSM 23486, BCC 41031, KCTC 23171, NCIM 5388

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Shewanella dokdonensis sp. nov., isolated from seawater.	Sung HR, Yoon JH, Ghim SY	Int J Syst Evol Microbiol	10.1099/ijs.0.032995-0	2011	*
Phylogeny	Shewanella indica sp. nov., isolated from sediment of the Arabian Sea.	Verma P, Pandey PK, Gupta AK, Kim HJ, Baik KS, Seong CN, Patole MS, Shouche YS	Int J Syst Evol Microbiol	10.1099/ijs.0.026310-0	2010	*

References

#17226

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23486

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Shewanella indica strain KCTC 23171

Shewanella indica KJW27

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