Allohumibacter endophyticus (JCM 19371, KCTC 29232, MWE-A11)

Name: Allohumibacter endophyticus (JCM 19371, KCTC 29232, MWE-A11)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140855

Type strain

Strain Designation MWE-A11

Culture col. no. JCM 19371 KCTC 29232 MWE-A11

NCBI tax ID(s) 1172610

Special Collections JCM KCTC Literature strains

Links

Allohumibacter endophyticus MWE-A11 is an aerobe, Gram-positive, rod-shaped prokaryote that forms circular colonies and was isolated from The root of natively growing Artemisia princeps sampled in the Daejeon area.

Gram-positive rod-shaped colony-forming aerobe 16S sequence

Name and taxonomic classification

SI-ID 288041

KCTC 29232,JCM 19371

@ref 20215

Last LPSN update 2025-12-16 10:03:42

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Microbacteriaceae

Genus Allohumibacter

Species Allohumibacter endophyticus

Full scientific name Allohumibacter endophyticus Kim et al. 2016

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
43667	positive	0.5-1 µm	0.5-0.7 µm	rod-shaped

Colony morphology

@ref	Colony color	Colony shape	Incubation period	Medium used
43667	Yellow	circular	2 days	TSA agar

Culture and growth conditions

Culture medium

@ref	Name	Growth
43667	Trypticase Soy Agar (TSA)

Culture temp

@ref	Growth	Type	Temperature (°C)
43667	positive	growth	15-37
43667	positive	optimum	30
67770	positive	growth	28

Culture pH

@ref	Ability	Type	PH
43667	positive	optimum	7
43667	positive	growth	6-8

Physiology and metabolism

Oxygen tolerance

43667

Oxygen toleranceaerobe

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43667	NaCl	positive	growth	0-5 %(w/v)
43667	NaCl	positive	optimum	0 %(w/v)

Observation

67770

Observationquinones: MK-11, MK-10

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43667	27613 ChEBI	amygdalin	+	builds acid from
43667	18305 ChEBI	arbutin	+	builds acid from
43667		casein	+	hydrolysis
43667	17057 ChEBI	cellobiose	+	builds acid from
43667	62968 ChEBI	cellulose	+	hydrolysis
43667	15824 ChEBI	D-fructose	+	builds acid from
43667	12936 ChEBI	D-galactose	+	builds acid from
43667	17634 ChEBI	D-glucose	+	builds acid from
43667	16899 ChEBI	D-mannitol	+	assimilation
43667	16899 ChEBI	D-mannitol	+	builds acid from
43667	16024 ChEBI	D-mannose	+	builds acid from
43667	16991 ChEBI	dna	+	hydrolysis
43667	4853 ChEBI	esculin	+	hydrolysis
43667	5291 ChEBI	gelatin	+	hydrolysis
43667	17754 ChEBI	glycerol	+	builds acid from
43667	30849 ChEBI	L-arabinose	+	builds acid from
43667	17306 ChEBI	maltose	+	assimilation
43667	17306 ChEBI	maltose	+	builds acid from
43667	17632 ChEBI	nitrate	+	reduction
43667	32032 ChEBI	potassium gluconate	+	assimilation
43667	17814 ChEBI	salicin	+	builds acid from
43667	53258 ChEBI	sodium citrate	+	assimilation
43667	28017 ChEBI	starch	+	hydrolysis
43667	53424 ChEBI	tween 20	+	hydrolysis
43667	53426 ChEBI	tween 80	+	hydrolysis

Metabolite production

@ref	Chebi-ID	Metabolite	Production
43667	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
43667	arginine dihydrolase	-	3.5.3.6
43667	beta-galactosidase	+	3.2.1.23
43667	beta-glucosidase	+	3.2.1.21
43667	urease	-	3.5.1.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
43667	The root of natively growing Artemisia princeps (mugwort) sampled in the Daejeon area	Daejean Area	Republic of Korea	KOR	Asia	36.7	127.886 36.7/127.886
67770	Root of wild Artemisia princeps (mugwort)		Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence JQ723726 (>99% sequence identity) for Allohumibacter endophyticus from Microbeatlas

Aquatic Samples	9
Soil Samples	4
Animal Samples	37
Plant Samples	9
Total Samples	59

Interaction and safety

Sequence information

16S sequences

@ref	Description	Accession	Database
43667	Allohumibacter endophyticus strain MWE-A11 16S ribosomal RNA gene, partial sequence	JQ723726

GC content

@ref	GC-content (mol%)	Method
67770	68.8	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Allohumibacter endophyticus gen. nov., sp. nov., isolated from the root of wild Artemisia princeps (mugwort).	Ri Kim Y, Kim TS, Han JH, Joung Y, Park J, Kim SB	Int J Syst Evol Microbiol	10.1099/ijsem.0.000948	2016

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43667	Yu Ri Kim, Tae-Su Kim, Ji-Hye Han, Yochan Joung, Jisun Park, Seung Bum Kim: Allohumibacter endophyticus gen. nov., sp. nov., isolated from the root of wild Artemisia princeps (mugwort). IJSEM 66: 1823 - 1827 2016 ( DOI 10.1099/ijsem.0.000948 , PubMed 26842896 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Allohumibacter endophyticus (JCM 19371, KCTC 29232, MWE-A11)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Halophily

Observation

Metabolite utilization

Metabolite production

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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