Name: Allohumibacter endophyticus MWE-A11
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140855

Type strain:

Species: Allohumibacter endophyticus

Strain Designation: MWE-A11

Culture col. no.: JCM 19371, KCTC 29232

Strain history: S. B. Kim MWE-A11.

NCBI tax ID(s): 1172610 (species)

Section

Allohumibacter endophyticus MWE-A11 is an aerobe, Gram-positive, rod-shaped bacterium that forms circular colonies and was isolated from The root of natively growing Artemisia princeps sampled in the Daejeon area.

colony-forming
Gram-positive
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Microbacteriaceae*
	Genus	*Allohumibacter*
	Species	**Allohumibacter endophyticus**
	Full Scientific Name (LPSN)	Allohumibacter endophyticus Kim et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43667]	Gram stain	positive

[Ref.: #43667]	Cell length	0.5-1 µm

[Ref.: #43667]	Cell width	0.5-0.7 µm

[Ref.: #43667]	Cell shape	rod-shaped

[Ref.: #43667]	Motility	no

[Ref.: #43667]	Colony color	Yellow
[Ref.: #43667]	Colony shape	circular
[Ref.: #43667]	Incubation period	2 days
[Ref.: #43667]	Cultivation medium used	TSA agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43667]

Culture medium

Trypticase Soy Agar (TSA)

[Ref.: #43667]

Culture medium growth

		Temperature
[Ref.: #43667]	growth	15-37 °C
[Ref.: #43667]	optimum	30 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #43667]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43667]			optimum	7
[Ref.: #43667]			growth	6-8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43667]

Oxygen tolerance

aerobe

[Ref.: #43667]

Halophily / tolerance level

non-halophilic

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43667]		NaCl		growth	0-5	%(w/v)
[Ref.: #43667]		NaCl		optimum	0	%(w/v)

[Ref.: #67770]

Observation

quinones: MK-11, MK-10

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43667]	amygdalin ChEBI	+	builds acid from
[Ref.: #43667]	arbutin ChEBI	+	builds acid from
[Ref.: #43667]	casein	+	hydrolysis
[Ref.: #43667]	cellobiose ChEBI	+	builds acid from
[Ref.: #43667]	cellulose ChEBI	+	hydrolysis
[Ref.: #43667]	D-fructose ChEBI	+	builds acid from
[Ref.: #43667]	D-galactose ChEBI	+	builds acid from
[Ref.: #43667]	D-glucose ChEBI	+	builds acid from
[Ref.: #43667]	D-mannitol ChEBI	+	assimilation
[Ref.: #43667]	D-mannitol ChEBI	+	builds acid from
[Ref.: #43667]	D-mannose ChEBI	+	builds acid from
[Ref.: #43667]	dna ChEBI	+	hydrolysis
[Ref.: #43667]	esculin ChEBI	+	hydrolysis
[Ref.: #43667]	gelatin ChEBI	+	hydrolysis
[Ref.: #43667]	glycerol ChEBI	+	builds acid from
[Ref.: #43667]	L-arabinose ChEBI	+	builds acid from
[Ref.: #43667]	maltose ChEBI	+	assimilation
[Ref.: #43667]	maltose ChEBI	+	builds acid from
[Ref.: #43667]	nitrate ChEBI	+	reduction
[Ref.: #43667]	potassium gluconate ChEBI	+	assimilation
[Ref.: #43667]	salicin ChEBI	+	builds acid from
[Ref.: #43667]	sodium citrate ChEBI	+	assimilation
[Ref.: #43667]	starch ChEBI	+	hydrolysis
[Ref.: #43667]	tween 20 ChEBI	+	hydrolysis
[Ref.: #43667]	tween 80 ChEBI	+	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43667]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43667]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43667]	beta-galactosidase	+	3.2.1.23
[Ref.: #43667]	beta-glucosidase	+	3.2.1.21
[Ref.: #43667]	urease	-	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43667]	Sample type/isolated from	The root of natively growing Artemisia princeps (mugwort) sampled in the Daejeon area
[Ref.: #43667]	Geographic location (country and/or sea, region)	Daejean Area
[Ref.: #43667]	Country	Republic of Korea
[Ref.: #43667]	Country ISO 3 Code	KOR
[Ref.: #43667]	Continent	Asia
[Ref.: #43667]	Geographic location	36.7000°/127.8860°

[Ref.: #67770]	Sample type/isolated from	Root of wild Artemisia princeps (mugwort)
[Ref.: #67770]	Host species	Artemisia princeps
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JQ723726 (>99% sequence identity) for Allohumibacter endophyticus from Microbeatlas

Aquatic Samples	9
Soil Samples	4
Animal Samples	37
Plant Samples	9
Total Samples	59

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43667]	16S rRNA gene sequence	JQ723726		GenBank

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GC-content

68.8 mol%

thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #43667]

Culture collection no.

JCM 19371, KCTC 29232

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Allohumibacter endophyticus gen. nov., sp. nov., isolated from the root of wild Artemisia princeps (mugwort).	Ri Kim Y, Kim TS, Han JH, Joung Y, Park J, Kim SB	Int J Syst Evol Microbiol	10.1099/ijsem.0.000948	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43667

Yu Ri Kim, Tae-Su Kim, Ji-Hye Han, Yochan Joung, Jisun Park, Seung Bum Kim: Allohumibacter endophyticus gen. nov., sp. nov., isolated from the root of wild Artemisia princeps (mugwort). IJSEM 66: 1823 - 1827 2016 ( DOI 10.1099/ijsem.0.000948 , PubMed 26842896 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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