Name: Achromobacter marplatensis CCUG 56371
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140854

Type strain:

Species: Achromobacter marplatensis

Culture col. no.: CCUG 56371, CCM 7608, CECT 7342, LMG 26219

NCBI tax ID(s): 470868 (species)

Other strains from Achromobacter marplatensis

A. marplatensis DSM 29603, CCUG 61968, LMG 26692
A. marplatensis CCUG 61951, LMG 26682
A. marplatensis CCUG 61969, LMG 26693
A. marplatensis CCUG 61970, LMG 26694

Section

Achromobacter marplatensis CCUG 56371 is an aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from Soil.

colony-forming
Gram-negative
aerobe
mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Alcaligenaceae*
	Genus	*Achromobacter*
	Species	**Achromobacter marplatensis**
	Full Scientific Name (PNU)	Achromobacter marplatensis Gomila et al. 2011

Synonym

Achromobacter spiritinus

Information on morphological and physiological properties Morphology

[Ref.: #43665]	Gram stain	negative
[Ref.: #43665]	Cell length	1.4-2.8 µm
[Ref.: #43665]	Cell width	0.4-1.1 µm
[Ref.: #43665]	Motility	no

[Ref.: #69480]	Gram stain	negative Confidence in %99.986

[Ref.: #69480]	Motility	yes Confidence in %96.739

[Ref.: #43665]	Colony size	1-2 mm
[Ref.: #43665]	Colony color	non-pigmented, translucent
[Ref.: #43665]	Colony shape	circular
[Ref.: #43665]	Incubation period	2 days
[Ref.: #43665]	Cultivation medium used	Trypticase Soy Agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43665]

Culture medium

Trypticase Soy Agar

[Ref.: #43665]

Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #60931]			growth	30 °C

[Ref.: #60931]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #60931]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.843

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43665]		NaCl		growth	3	%
[Ref.: #43665]		NaCl	no	growth	6	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43665]	(S)-lactate ChEBI	+	oxidation
[Ref.: #43665]	2-hydroxybutyrate ChEBI	-	oxidation
[Ref.: #43665]	2-oxoglutarate ChEBI	+	oxidation
[Ref.: #43665]	acetate ChEBI	+	oxidation
[Ref.: #43665]	adipate ChEBI	+	assimilation
[Ref.: #43665]	alpha-D-glucose ChEBI	-	oxidation
[Ref.: #43665]	beta-hydroxybutyrate ChEBI	+	oxidation
[Ref.: #43665]	citrate ChEBI	+	assimilation
[Ref.: #43665]	D-gluconate ChEBI	+	assimilation
[Ref.: #43665]	D-malate ChEBI	+	oxidation
[Ref.: #43665]	D-mannose ChEBI	-	assimilation
[Ref.: #43665]	D-mannose ChEBI	-	oxidation
[Ref.: #43665]	D-saccharate ChEBI	+	oxidation
[Ref.: #43665]	decanoate ChEBI	+	assimilation
[Ref.: #43665]	gamma-aminobutyric acid ChEBI	-	oxidation
[Ref.: #43665]	gelatin ChEBI	-	hydrolysis
[Ref.: #43665]	glucose ChEBI	-	assimilation
[Ref.: #43665]	glucose ChEBI	-	builds acid from
[Ref.: #43665]	glycine-proline ChEBI	-	oxidation
[Ref.: #43665]	L-alanine ChEBI	+	oxidation
[Ref.: #43665]	L-arabinose ChEBI	-	assimilation
[Ref.: #43665]	L-histidine ChEBI	+	oxidation
[Ref.: #43665]	L-malate ChEBI	+	assimilation
[Ref.: #43665]	L-pyroglutamic acid ChEBI	+	oxidation
[Ref.: #43665]	lactate ChEBI	+	assimilation
[Ref.: #43665]	maltose ChEBI	-	assimilation
[Ref.: #43665]	nitrate ChEBI	+	reduction
[Ref.: #43665]	phenylacetate ChEBI	+	assimilation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #43665]	d-serine ChEBI		yes
[Ref.: #43665]	fusidate ChEBI		yes
[Ref.: #43665]	nalidixic acid ChEBI		yes
[Ref.: #43665]	niaproof ChEBI		yes
[Ref.: #43665]	sodium bromate ChEBI	yes
[Ref.: #43665]	sodium butyrate ChEBI		yes
[Ref.: #43665]	sodium chloride ChEBI	yes
[Ref.: #43665]	tetrazolium blue ChEBI		yes
[Ref.: #43665]	troleandomycin ChEBI		yes

	Enzyme	Enzyme activity	EC number
[Ref.: #43665]	acid phosphatase	+	3.1.3.2
[Ref.: #43665]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43665]	lipase	+
[Ref.: #43665]	valine arylamidase	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43665]	Sample type/isolated from	Soil
[Ref.: #43665]	Geographic location (country and/or sea, region)	Argentina
[Ref.: #43665]	Country	Argentina
[Ref.: #43665]	Country ISO 3 Code	ARG
[Ref.: #43665]	Continent	Middle and South America
[Ref.: #43665]	Isolation date	2001

[Ref.: #60931]	Sample type/isolated from	Soil contaminated with pentachlorophenol
[Ref.: #60931]	Geographic location (country and/or sea, region)	Buenos Aires,Mar del Plata
[Ref.: #60931]	Country	Argentina
[Ref.: #60931]	Country ISO 3 Code	ARG
[Ref.: #60931]	Continent	Middle and South America
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Achromobacter marplatensis LMG 26219	GCA_902859635	contig	GenBank	470868 tax ID	*
[Ref.: #66792]	Achromobacter marplatensis CECT 7342	GCA_003315095	scaffold	GenBank	470868 tax ID	*
[Ref.: #66792]	Achromobacter marplatensis strain CECT 7342	470868.5	wgs	PATRIC	470868 tax ID	*
[Ref.: #66792]	Achromobacter marplatensis strain LMG 26219	470868.6	wgs	PATRIC	470868 tax ID	*
[Ref.: #66792]	Achromobacter marplatensis CECT 7342	2770939588	draft	JGI IMG/M	470868 tax ID	*

[Ref.: #43665]

GC-content

65.4 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Achromobacter marplatensis strain LMG 26219 PATRIC: 470868.6
[Ref.: #69480]	anaerobic	no	99.402	yes
[Ref.: #69480]	gram-positive	no	99.986	no
[Ref.: #69480]	spore-forming	no	99.843	yes
[Ref.: #69480]	thermophile	no	99.628	yes
[Ref.: #69480]	motile	yes	96.739	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Achromobacter marplatensis strain LMG 26219 PATRIC: 470868.6
[Ref.: #69481]	spore-forming	no	100	no

Availability in culture collections External links

[Ref.: #43665]

Culture collection no.

CCUG 56371, CCM 7608, CECT 7342, LMG 26219

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Achromobacter marplatensis sp. nov., isolated from a pentachlorophenol-contaminated soil.	Gomila M, Tvrzova L, Teshim A, Sedlacek I, Gonzalez-Escalona N, Zdrahal Z, Sedo O, Gonzalez JF, Bennasar A, Moore ERB, Lalucat J, Murialdo SE	Int J Syst Evol Microbiol	10.1099/ijs.0.025304-0	2010	*
Phylogeny	Achromobacter panacis sp. nov., isolated from rhizosphere of Panax ginseng.	Singh P, Kim YJ, Singh H, Farh ME, Yang DC	J Microbiol	10.1007/s12275-017-6612-3	2017	*
Phylogeny	Reclassification of Achromobacter spiritinus Vandamme et al. 2013 as a later heterotypic synonym of Achromobacter marplatensis Gomila et al. 2011.	Vandamme PA, Peeters C, Cnockaert M, Gomila M, Moore ERB, Spilker T, LiPuma JJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.000872	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43665

Peter A. Vandamme, Charlotte Peeters, Margo Cnockaert, Margarita Gomila, Edward R. B. Moore, Theodore Spilker, John J. LiPuma: Reclassification of Achromobacter spiritinus Vandamme et al. 2013 as a later heterotypic synonym of Achromobacter marplatensis Gomila et al. 2011. IJSEM 66: 1641 - 1644 2016 ( DOI 10.1099/ijsem.0.000872 , PubMed 26738485 )

#60931 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 56371

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Achromobacter marplatensis strain LMG 26219

Achromobacter marplatensis strain LMG 26219

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