Achromobacter marplatensis (CCUG 56371, CCM 7608, CECT 7342)

Name: Achromobacter marplatensis (CCUG 56371, CCM 7608, CECT 7342)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140854

Type strain

Strain Designation B2

Culture col. no. CCUG 56371 CCM 7608 CECT 7342 LMG 26219 CIP 110817 1 more

NCBI tax ID(s) 470868

Special Collections CCUG Literature strains CIP

History CIP <- 2014, CECT <- 2007, M. Gomila, Illes Balears Univ., Palma de Mallorca, Balearic Islands, Spain: strain B2

Links

Achromobacter marplatensis B2 is an aerobe, Gram-negative bacterium that forms circular colonies and was isolated from Soil.

Gram-negative colony-forming aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 374759

LMG 26219,CECT 7342,CCM 7608,CCUG 56371,CIP 110817

@ref 20215

Last LPSN update 2026-05-29 08:39:49

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Alcaligenaceae

Genus Achromobacter

Species Achromobacter marplatensis

Full scientific name Achromobacter marplatensis Gomila et al. 2011

Synonyms (1)

Achromobacter spiritinus

BacDive ID	Other strains from **Achromobacter marplatensis** (4)	Type strain
130145	A. marplatensis AU 14580, R-46660, DSM 29603, CCUG 61968, ...
156465	A. marplatensis CCUG 61951, LMG 26682
156479	A. marplatensis CCUG 61969, LMG 26693
156480	A. marplatensis CCUG 61970, LMG 26694

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
43665	negative	1.4-2.8 µm	0.4-1.1 µm
120842	negative			rod-shaped
125438	negative				98.432

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
43665	1-2 mm	non-pigmented, translucent	circular	2 days	Trypticase Soy Agar

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link
43665	Trypticase Soy Agar
120842	CIP Medium 328		Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
60931	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
60931	aerobe
125438	aerobe	91.814
125439	obligate aerobe	94.859

Spore formation

@ref	Spore formation	Confidence
125439		99.129

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43665	NaCl	positive	growth	3 %
43665	NaCl		growth	6 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43665	16651 ChEBI	(S)-lactate	+	oxidation
43665	64552 ChEBI	2-hydroxybutyrate	-	oxidation
43665	30916 ChEBI	2-oxoglutarate	+	oxidation
43665	30089 ChEBI	acetate	+	oxidation
43665	17128 ChEBI	adipate	+	assimilation
43665	17925 ChEBI	alpha-D-glucose	-	oxidation
43665	8295 ChEBI	beta-hydroxybutyrate	+	oxidation
43665	16947 ChEBI	citrate	+	assimilation
43665	18391 ChEBI	D-gluconate	+	assimilation
43665	15588 ChEBI	D-malate	+	oxidation
43665	16024 ChEBI	D-mannose	-	assimilation
43665	16024 ChEBI	D-mannose	-	oxidation
43665	33801 ChEBI	D-saccharate	+	oxidation
43665	27689 ChEBI	decanoate	+	assimilation
43665	16865 ChEBI	gamma-aminobutyric acid	-	oxidation
43665	5291 ChEBI	gelatin	-	hydrolysis
43665	17234 ChEBI	glucose	-	assimilation
43665	17234 ChEBI	glucose	-	builds acid from
43665	70744 ChEBI	glycine-proline	-	oxidation
43665	16977 ChEBI	L-alanine	+	oxidation
43665	30849 ChEBI	L-arabinose	-	assimilation
43665	15971 ChEBI	L-histidine	+	oxidation
43665	15589 ChEBI	L-malate	+	assimilation
43665	18183 ChEBI	L-pyroglutamic acid	+	oxidation
43665	24996 ChEBI	lactate	+	assimilation
43665	17306 ChEBI	maltose	-	assimilation
43665	17632 ChEBI	nitrate	+	reduction
43665	18401 ChEBI	phenylacetate	+	assimilation

Antibiotic resistance

@ref	ChEBI	Metabolite
43665	16523	d-serine
43665	71321	fusidate
43665	100147	nalidixic acid
43665	75273	niaproof
43665	75229	sodium bromate
43665	64103	sodium butyrate
43665	26710	sodium chloride
43665	75198	tetrazolium blue
43665	45735	troleandomycin

Enzymes

@ref	Value	Activity	Ec
43665	acid phosphatase	+	3.1.3.2
43665	cytochrome oxidase	+	1.9.3.1
43665	lipase	+
43665	valine arylamidase	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
43665	Soil	Argentina	Argentina	ARG	Middle and South America	2001
60931	Soil contaminated with pentachlorophenol	Buenos Aires,Mar del Plata	Argentina	ARG	Middle and South America
120842	Environment, Soil by selective enrichment with pentachlorophenol	Mar del Plata	Argentina	ARG	Middle and South America	2001-01-02

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
120842	1	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM331509v1 assembly for Achromobacter marplatensis CECT 7342	scaffold	GCA_003315095	470868.5	2770939588	470868	68.09
66792	LMG 26219 assembly for Achromobacter marplatensis LMG 26219	contig	GCA_902859635	470868.6	8115450338	470868	66.2
124043	ASM4243295v1 assembly for Achromobacter marplatensis CCM 7608	scaffold	GCA_042432955			470868	53.78

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
124043	Achromobacter marplatensis strain CCUG 56371 16S ribosomal RNA gene, partial sequence.	JQ746424	1309		470868
124043	Achromobacter marplatensis strain CCM 7608 16S ribosomal RNA gene, partial sequence.	MT760155	1355		470868

GC content

43665

GC-content (mol%)65.4

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM331509v1 assembly for Achromobacter marplatensis CECT 7342
BV-BRC: 470868.5

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	gram_stain	BacteriaNetⓘ	negative	89.08	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	94.86	no
125439	motility	BacteriaNetⓘ	yes	73.48	no
125439	spore_formation	BacteriaNetⓘ	no	99.13	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Achromobacter marplatensis CECT 7342
NCBI: GCA_003315095.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.43	yes
125438	anaerobic	anaerobicⓘ	no	97.68	yes
125438	aerobic	aerobicⓘ	yes	91.81	yes
125438	spore-forming	spore-formingⓘ	no	88.79	no
125438	thermophilic	thermophileⓘ	no	98.49	no
125438	flagellated	motile2+ⓘ	yes	86.69	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Multilocus sequence analysis of isolates of Achromobacter from patients with cystic fibrosis reveals infecting species other than Achromobacter xylosoxidans.	Ridderberg W, Wang M, Norskov-Lauritsen N.	J Clin Microbiol	10.1128/jcm.00728-12	2012
Phylogeny	Reclassification of Achromobacter spiritinus Vandamme et al. 2013 as a later heterotypic synonym of Achromobacter marplatensis Gomila et al. 2011.	Vandamme PA, Peeters C, Cnockaert M, Gomila M, Moore ERB, Spilker T, LiPuma JJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.000872	2016
	Achromobacter seleniivolatilans sp. nov. and Buttiauxella selenatireducens sp. nov., isolated from the rhizosphere of selenium hyperaccumulator Cardamine hupingshanesis.	Zhang S, Liu Y, Wang H, Xu Z, Peng J, Xu Q, Li K, Wang H, Guo Y.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006334	2024
Phylogeny	Achromobacter marplatensis sp. nov., isolated from a pentachlorophenol-contaminated soil.	Gomila M, Tvrzova L, Teshim A, Sedlacek I, Gonzalez-Escalona N, Zdrahal Z, Sedo O, Gonzalez JF, Bennasar A, Moore ERB, Lalucat J, Murialdo SE	Int J Syst Evol Microbiol	10.1099/ijs.0.025304-0	2010
Phylogeny	Achromobacter panacis sp. nov., isolated from rhizosphere of Panax ginseng.	Singh P, Kim YJ, Singh H, Farh ME, Yang DC	J Microbiol	10.1007/s12275-017-6612-3	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43665	Peter A. Vandamme, Charlotte Peeters, Margo Cnockaert, Margarita Gomila, Edward R. B. Moore, Theodore Spilker, John J. LiPuma: Reclassification of Achromobacter spiritinus Vandamme et al. 2013 as a later heterotypic synonym of Achromobacter marplatensis Gomila et al. 2011. IJSEM 66: 1641 - 1644 2016 ( DOI 10.1099/ijsem.0.000872 , PubMed 26738485 )
#60931	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 56371
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#120842	Collection of Institut Pasteur ; Curators of the CIP; CIP 110817
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Achromobacter marplatensis (CCUG 56371, CCM 7608, CECT 7342)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Antibiotic resistance

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_003315095

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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