Shewanella corallii (DSM 21332, CIP 110229, LMG 24563)

Name: Shewanella corallii (DSM 21332, CIP 110229, LMG 24563)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 14085

Type strain

Strain Designation F5, fav-2-10-05

Culture col. no. DSM 21332 CIP 110229 LMG 24563 F5 fav-2-10-05

NCBI tax ID(s) 560080

Special Collections DSMZ CIP Literature strains

History 2010, DSMZ <- M. Shnit-Orland, Ben-Gurion-Univ., Beer-Sheva, Israel; fav-2-10-05 CIP <- 2010, DSMZ <- M. Shnit-Orland, Ben-Gurion-Univ., Beer-Sheva, Israel: strain fav-2-10-05

Links

Shewanella corallii F5 is a facultative aerobe, Gram-negative, motile bacterium that was isolated from coral mucus layer of Favia sp..

Gram-negative motile rod-shaped facultative aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 343772

LMG 24563,DSM 21332,CIP 110229

@ref 20215

Last LPSN update 2026-02-09 11:21:19

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Alteromonadales

Family Shewanellaceae

Genus Shewanella

Species Shewanella corallii

Full scientific name Shewanella corallii Shnit-Orland et al. 2010

BacDive ID	Other strains from **Shewanella corallii** (1)	Type strain
24544	S. corallii S5, Sty-2-05, Sty-2-10-05, DSM 21354

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
29553	negative	2 µm	0.8-1 µm	rod-shaped
118748	negative			rod-shaped
125438	negative				100

Pigmentation

29553

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
15619	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)	Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
40402	Marine agar (MA)		Distilled water make up to (1000.000 ml);Marine agar (55.100 g)
118748	CIP Medium 13	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
15619	positive	growth	26
29553	positive	growth	10-37
29553	positive	optimum	26
40402	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
29553	facultative aerobe
118748	obligate aerobe

Spore formation

@ref	Spore formation	Confidence
29553
125438		90.22

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29553	NaCl	positive	growth	0.5-8 %
29553	NaCl	positive	optimum	0.5-6 %

Observation

29553

Observationaggregates in chains

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29553	17306 ChEBI	maltose	+	carbon source
29553	506227 ChEBI	N-acetylglucosamine	+	carbon source
118748	17632 ChEBI	nitrate	+	reduction
118748	16301 ChEBI	nitrite	-	reduction

Metabolite production

@ref	Chebi-ID	Metabolite	Production
118748	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	+	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
29553	catalase	+	1.11.1.6
118748	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
29553	cytochrome oxidase	+	1.9.3.1
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68382	leucine arylamidase	-	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
118748	oxidase	+
68382	trypsin	-	3.4.21.4	from API zym
118748	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
118748	-	+	+	+	-	-	-	-	-	+	+	+	-	-	-	-	-	+	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Invertebrates (Other)	#Cnidaria (Corals)
#Host Body Product	#Oral cavity and Airways	#Mucus

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
15619	coral mucus layer of Favia sp.	Favia	Red Sea, Gulf of Eilat, coral reef (29°51 'N, 34°94 'E)	Israel	ISR	Asia	29.372	34.884 29.372/34.884
118748	Coral of genus Favia, muculus		Gulf of Eilat	Israel	ISR	Asia

Taxonmaps

69479

Global distribution of 16S sequence FJ041083 (>99% sequence identity) for Shewanella corallii subclade from Microbeatlas

Aquatic Samples	387
Soil Samples	2
Animal Samples	72
Plant Samples
Total Samples	461

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
15619	1	Risk group (German classification) According to TRBA 466
118748	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2334912v1 assembly for Shewanella corallii DSM 21332	contig	GCA_023349125	560080.9	8045928163	560080	71.13

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
15619	Alteromonadales bacterium fav-2-10-05 16S ribosomal RNA gene, partial sequence	FJ041083	1481		560080

GC content

@ref	GC-content (mol%)	Method
15619	49.1	high performance liquid chromatography (HPLC)
29553	49.1

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Shewanella corallii DSM 21332
NCBI: GCA_023349125.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	100.00	yes
125438	anaerobic	anaerobicⓘ	no	92.28	no
125438	aerobic	aerobicⓘ	no	53.09	no
125438	spore-forming	spore-formingⓘ	no	90.22	no
125438	thermophilic	thermophileⓘ	no	99.98	no
125438	flagellated	motile2+ⓘ	yes	85.55	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Shewanella submarina sp. nov., a gammaproteobacterium isolated from marine water.	Sudha Rani P, Saini MK, Pinnaka AK, Sampath Kumar G, Kumar S, Vemuluri VR, Tanuku NRS	Int J Syst Evol Microbiol	10.1099/ijsem.0.003059	2018
Phylogeny	Shewanella corallii sp. nov., a marine bacterium isolated from a Red Sea coral.	Shnit-Orland M, Sivan A, Kushmaro A	Int J Syst Evol Microbiol	10.1099/ijs.0.015768-0	2009

References

#15619	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21332
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25948	IJSEM 2293 2010 ( DOI 10.1099/ijs.0.015768-0 , PubMed 19915103 )
#29553	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25948
#40402	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#118748	Collection of Institut Pasteur ; Curators of the CIP; CIP 110229
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Shewanella corallii (DSM 21332, CIP 110229, LMG 24563)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_023349125

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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