Name: Shewanella corallii F5
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 14085

Type strain:

Species: Shewanella corallii

Strain Designation: F5, fav-2-10-05

Culture col. no.: DSM 21332, CIP 110229, LMG 24563

Strain history: CIP <- 2010, DSMZ <- M. Shnit-Orland, Ben-Gurion-Univ., Beer-Sheva, Israel: strain fav-2-10-05

NCBI tax ID(s): 560080 (species)

SI-ID 343772

LMG 24563, DSM 21332, CIP 110229

Special Collections

Other strains from Shewanella corallii

Section

When using BacDive for research please cite our paper

Shewanella corallii F5 is a facultative aerobe, mesophilic, Gram-negative bacterium that was isolated from coral mucus layer of Favia sp..

Gram-negative
motile
rod-shaped
facultative aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Shewanellaceae*
	Genus	*Shewanella*
	Species	**Shewanella corallii**
	Full Scientific Name (LPSN)	Shewanella corallii Shnit-Orland et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #29553]	Gram stain	negative
[Ref.: #118748]	Gram stain	negative
[Ref.: #125438]	Gram stain	negative Confidence in %100

[Ref.: #29553]	Cell length	2 µm

[Ref.: #29553]	Cell width	0.8-1 µm

[Ref.: #29553]	Cell shape	rod-shaped
[Ref.: #118748]	Cell shape	rod-shaped

[Ref.: #29553]	Motility	yes
[Ref.: #118748]	Motility	yes

[Ref.: #29553]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #15619]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #15619]

Culture medium growth

[Ref.: #15619]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15619]

Culture medium composition

expand / minimize

[Ref.: #40402]

Culture medium

Marine agar (MA)

[Ref.: #40402]

Culture medium growth

[Ref.: #40402]

Culture medium composition

expand / minimize

[Ref.: #118748]

Culture medium

CIP Medium 13

[Ref.: #118748]

Culture medium growth

[Ref.: #118748]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #15619]	growth	26 °C
[Ref.: #29553]	growth	10-37 °C
[Ref.: #29553]	optimum	26 °C
[Ref.: #40402]	growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29553]	Oxygen tolerance	facultative aerobe
[Ref.: #118748]	Oxygen tolerance	obligate aerobe

[Ref.: #29553]	Ability of spore formation	no
[Ref.: #125438]	Ability of spore formation	no Confidence in %90.22

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29553]		NaCl		growth	0.5-8	%
[Ref.: #29553]		NaCl		optimum	0.5-6	%

[Ref.: #29553]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29553]	maltose ChEBI	+	carbon source
[Ref.: #29553]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #118748]	nitrate ChEBI	+	reduction
[Ref.: #118748]	nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #118748]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #29553]	catalase	+	1.11.1.6
[Ref.: #118748]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #29553]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	-	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #118748]	oxidase	+
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #118748]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #118748]	12447	-	+	+	+	-	-	-	-	-	+	+	+	-	-	-	-	-	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15619]	Sample type/isolated from	coral mucus layer of Favia sp.
[Ref.: #15619]	Host species	Favia
[Ref.: #15619]	Geographic location (country and/or sea, region)	Red Sea, Gulf of Eilat, coral reef (29°51 'N, 34°94 'E)
[Ref.: #15619]	Country	Israel
[Ref.: #15619]	Country ISO 3 Code	ISR
[Ref.: #15619]	Continent	Asia
[Ref.: #15619]	Geographic location	29.3720°/34.8840°

[Ref.: #118748]	Sample type/isolated from	Coral of genus Favia, muculus
[Ref.: #118748]	Geographic location (country and/or sea, region)	Gulf of Eilat
[Ref.: #118748]	Country	Israel
[Ref.: #118748]	Country ISO 3 Code	ISR
[Ref.: #118748]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Invertebrates (Other)	#Cnidaria (Corals)
#Host Body Product	#Oral cavity and Airways	#Mucus

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ041083 (>99% sequence identity) for Shewanella corallii subclade from Microbeatlas

Aquatic Samples	387
Soil Samples	2
Animal Samples	72
Plant Samples
Total Samples	461

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15619]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #118748]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15619]	Alteromonadales bacterium fav-2-10-05 16S ribosomal RNA gene, partial sequence	FJ041083	1481	GenBank ENA	560080 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Shewanella corallii DSM 21332	GCA_023349125	contig	GenBank ENA	560080 tax ID	*

[Ref.: #15619]	GC-content	49.1 mol%	high performance liquid chromatography (HPLC)
[Ref.: #29553]	GC-content	49.1 mol%

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Shewanella corallii DSM 21332 NCBI: GCA_023349125.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	100	yes
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	92.279	no
[Ref.: #125438]	aerobic	aerobicⓘ	no	53.09	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	90.22	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	99.975	no
[Ref.: #125438]	motile2+	flagellatedⓘ	yes	85.545	no

Availability in culture collections External links

[Ref.: #15619]

Culture collection no.

DSM 21332, CIP 110229, LMG 24563

[Ref.: #83254]

SI-ID 343772

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Shewanella submarina sp. nov., a gammaproteobacterium isolated from marine water.	Sudha Rani P, Saini MK, Pinnaka AK, Sampath Kumar G, Kumar S, Vemuluri VR, Tanuku NRS	Int J Syst Evol Microbiol	10.1099/ijsem.0.003059	2018	*
Phylogeny	Shewanella corallii sp. nov., a marine bacterium isolated from a Red Sea coral.	Shnit-Orland M, Sivan A, Kushmaro A	Int J Syst Evol Microbiol	10.1099/ijs.0.015768-0	2009	*

References

#15619

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21332

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29553

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25948 (see below)

#40402 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#83254

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID343772.1 )

#118748 Collection of Institut Pasteur ; Curators of the CIP; CIP 110229

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#25948

IJSEM 2293 2010 ( DOI 10.1099/ijs.0.015768-0 , PubMed 19915103 )

* These data were automatically processed and therefore are not curated

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Shewanella corallii DSM 21332

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