Name: Tumebacillus soli KCTC 33141
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140843

Type strain:

Species: Tumebacillus soli

Culture col. no.: KCTC 33141, CECT 8918, CAU 11108

Strain history: <- Won-Yong Kim, Chungang Univ.

NCBI tax ID(s): 1229157 (species)

Section

Tumebacillus soli KCTC 33141 is an obligate aerobe, spore-forming, Gram-positive bacterium that forms circular colonies and was isolated from soil taken at a depth of 10 cm.

colony-forming
Gram-positive
motile
rod-shaped
spore-forming
obligate aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Alicyclobacillaceae*
	Genus	*Tumebacillus*
	Species	**Tumebacillus soli**
	Full Scientific Name (LPSN)	Tumebacillus soli Kim and Kim 2016

Information on morphological and physiological properties Morphology

[Ref.: #43646]	Gram stain	positive
[Ref.: #67771]	Gram stain	positive

[Ref.: #43646]	Cell length	0.7-2.7 µm

[Ref.: #43646]	Cell width	0.7-1.25 µm

[Ref.: #43646]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #43646]	Motility	yes
[Ref.: #67771]	Motility	yes

[Ref.: #43646]	Flagellum arrangement	peritrichous
[Ref.: #67771]	Flagellum arrangement	peritrichous

[Ref.: #43646]	Colony color	Cream
[Ref.: #43646]	Colony shape	circular
[Ref.: #43646]	Incubation period	3 days
[Ref.: #43646]	Cultivation medium used	R2A agar plates

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43646]

Culture medium

R2A agar plates

[Ref.: #43646]

Culture medium growth

		Temperature
[Ref.: #43646]	growth	25-45 °C
[Ref.: #43646]	optimum	37 °C
[Ref.: #67771]	growth	37 °C

[Ref.: #43646]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43646]			optimum	8
[Ref.: #43646]			growth	5.5-8.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43646]	Oxygen tolerance	obligate aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #43646]	Spore description	terminal endospores in swollen sporangia
[Ref.: #43646]	Type of spore	endospore
[Ref.: #43646]	Ability of spore formation	yes
[Ref.: #67771]	Type of spore	spore
[Ref.: #67771]	Ability of spore formation	yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43646]		NaCl		growth	0-2	%(w/v)
[Ref.: #43646]		NaCl		optimum	1	%(w/v)

[Ref.: #67771]

Observation

quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43646]	casein	+	hydrolysis
[Ref.: #43646]	cellobiose ChEBI	+	assimilation
[Ref.: #43646]	citrate ChEBI	+	hydrolysis
[Ref.: #43646]	D-fructose ChEBI	-	builds acid from
[Ref.: #43646]	D-galactose ChEBI	-	builds acid from
[Ref.: #43646]	D-glucose ChEBI	-	builds acid from
[Ref.: #43646]	D-mannitol ChEBI	-	builds acid from
[Ref.: #43646]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #43646]	D-trehalose ChEBI	-	builds acid from
[Ref.: #43646]	D-xylose ChEBI	-	builds acid from
[Ref.: #43646]	gelatin ChEBI	+	hydrolysis
[Ref.: #43646]	L-arabinose ChEBI	-	builds acid from
[Ref.: #43646]	lactose ChEBI	+	assimilation
[Ref.: #43646]	maltose ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration
[Ref.: #43646]	ampicillin ChEBI	yes	10	µg (disc)
[Ref.: #43646]	chloramphenicol ChEBI	yes	30	µg (disc)
[Ref.: #43646]	erythromycin ChEBI	yes	15	µg (disc)
[Ref.: #43646]	kanamycin ChEBI	yes	30	µg (disc)
[Ref.: #43646]	nalidixic acid ChEBI	yes	30	µg (disc)
[Ref.: #43646]	penicillin ChEBI	yes	10	Unit (disc)
[Ref.: #43646]	streptomycin ChEBI	yes	10	µg (disc)

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #43646]		cytochrome oxidase	+	1.9.3.1

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43646]

Fatty acid	Percentage
C15:0 iso	24.3
C17:0 iso	16.3
C17:1 iso ω9c	12.1
C18:1ω7c	7.2

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43646]	Sample type/isolated from	soil taken at a depth of 10 cm
[Ref.: #43646]	Geographic location (country and/or sea, region)	Danghangpo
[Ref.: #43646]	Country	Republic of Korea
[Ref.: #43646]	Country ISO 3 Code	KOR
[Ref.: #43646]	Continent	Asia
[Ref.: #43646]	Geographic location	35.0550°/128.3950°

[Ref.: #67771]	Sample type/isolated from	From non-rhizosphere soil
[Ref.: #67771]	Geographic location (country and/or sea, region)	Danghangpo
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
[Ref.: #67771]	Geographic location	35.0548°/128.3950°
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JX233496 (>99% sequence identity) for Tumebacillus soli subclade from Microbeatlas

Aquatic Samples	157
Soil Samples	1043
Animal Samples	61
Plant Samples	111
Total Samples	1372

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43646]	16S rRNA gene sequence	JX233496		GenBank

[Ref.: #43646]	GC-content	54.6 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67771]	GC-content	54.6 mol%

Availability in culture collections External links

[Ref.: #43646]

Culture collection no.

KCTC 33141, CECT 8918, CAU 11108

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Tumebacillus soli sp. nov., isolated from non-rhizosphere soil.	Kim JH, Kim W	Int J Syst Evol Microbiol	10.1099/ijsem.0.001009	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43646

Jong-Hwa Kim, Wonyong Kim: Tumebacillus soli sp. nov., isolated from non-rhizosphere soil. IJSEM 66: 2192 - 2197 2016 ( DOI 10.1099/ijsem.0.001009 , PubMed 26956136 )

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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