Name: Hymenobacter marinus KJ035
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140836

Type strain:

Species: Hymenobacter marinus

Strain Designation: KJ035

Culture col. no.: KCTC 42854, CECT 9069

Strain history: <- Kiseoung Joh, Hankuk Univ. of Foreign Studies.

NCBI tax ID(s): 1278057 (species)

Section

Hymenobacter marinus KJ035 is an obligate aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from coastal seawater of the East Sea.

colony-forming
Gram-negative
rod-shaped
obligate aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Hymenobacteraceae*
	Genus	*Hymenobacter*
	Species	**Hymenobacter marinus**
	Full Scientific Name (LPSN)	Hymenobacter marinus Kang et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43639]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #43639]	Cell length	4-7 µm

[Ref.: #43639]	Cell width	0.9-1 µm

[Ref.: #43639]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #43639]	Motility	no
[Ref.: #67771]	Motility	no

[Ref.: #43639]	Colony size	1.2 mm
[Ref.: #43639]	Colony color	Reddish
[Ref.: #43639]	Colony shape	circular
[Ref.: #43639]	Incubation period	3 days
[Ref.: #43639]	Cultivation medium used	R2A agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43639]

Culture medium

Reasoner's 2A agar (R2A)

[Ref.: #43639]

Culture medium growth

		Temperature
[Ref.: #43639]	growth	10-30 °C
[Ref.: #43639]	optimum	30 °C
[Ref.: #67771]	growth	30 °C

[Ref.: #43639]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43639]			optimum	7
[Ref.: #43639]			growth	7-8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43639]	Oxygen tolerance	obligate aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #43639]

Halophily / tolerance level

non-halophilic

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43639]		NaCl		growth	0-1.5	%(w/v)
[Ref.: #43639]		NaCl		optimum	0	%(w/v)

[Ref.: #67771]

Observation

quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43639]	2-oxobutanoate ChEBI	-	carbon source
[Ref.: #43639]	2-oxoglutarate ChEBI	-	carbon source
[Ref.: #43639]	acetate ChEBI	-	carbon source
[Ref.: #43639]	alpha-cyclodextrin ChEBI	+	carbon source
[Ref.: #43639]	alpha-D-glucose ChEBI	+	carbon source
[Ref.: #43639]	alpha-lactose ChEBI	+	carbon source
[Ref.: #43639]	carboxymethylcellulose ChEBI	-	hydrolysis
[Ref.: #43639]	casein	+	hydrolysis
[Ref.: #43639]	cellobiose ChEBI	+	carbon source
[Ref.: #43639]	cellulose ChEBI	-	hydrolysis
[Ref.: #43639]	D-fructose ChEBI	+	carbon source
[Ref.: #43639]	D-galactose ChEBI	+	carbon source
[Ref.: #43639]	D-gluconate ChEBI	-	carbon source
[Ref.: #43639]	D-glucose 6-phosphate ChEBI	+	carbon source
[Ref.: #43639]	D-mannitol ChEBI	+	carbon source
[Ref.: #43639]	D-mannose ChEBI	+	carbon source
[Ref.: #43639]	D-psicose ChEBI	-	carbon source
[Ref.: #43639]	D-trehalose ChEBI	+	carbon source
[Ref.: #43639]	dextrin ChEBI	-	hydrolysis
[Ref.: #43639]	dextrin ChEBI	+	carbon source
[Ref.: #43639]	dna ChEBI	-	hydrolysis
[Ref.: #43639]	gentiobiose ChEBI	+	carbon source
[Ref.: #43639]	glucose 1-phosphate ChEBI	+	carbon source
[Ref.: #43639]	glycogen ChEBI	+	carbon source
[Ref.: #43639]	glycyl L-aspartic acid ChEBI	-	carbon source
[Ref.: #43639]	glycyl-l-glutamate ChEBI	-	carbon source
[Ref.: #43639]	L-alaninamide ChEBI	-	carbon source
[Ref.: #43639]	L-alanine ChEBI	-	carbon source
[Ref.: #43639]	L-alanylglycine ChEBI	-	carbon source
[Ref.: #43639]	L-asparagine ChEBI	+	carbon source
[Ref.: #43639]	L-aspartate ChEBI	-	carbon source
[Ref.: #43639]	L-fucose ChEBI	-	carbon source
[Ref.: #43639]	L-glutamate ChEBI	+	carbon source
[Ref.: #43639]	L-ornithine ChEBI	-	carbon source
[Ref.: #43639]	L-proline ChEBI	+	carbon source
[Ref.: #43639]	L-threonine ChEBI	-	carbon source
[Ref.: #43639]	lactulose ChEBI	+	carbon source
[Ref.: #43639]	maltose ChEBI	+	carbon source
[Ref.: #43639]	melibiose ChEBI	+	carbon source
[Ref.: #43639]	methyl D-glucoside ChEBI	+	carbon source
[Ref.: #43639]	monomethyl succinate ChEBI	-	carbon source
[Ref.: #43639]	raffinose ChEBI	+	carbon source
[Ref.: #43639]	starch ChEBI	+	hydrolysis
[Ref.: #43639]	succinate ChEBI	-	carbon source
[Ref.: #43639]	sucrose ChEBI	+	carbon source
[Ref.: #43639]	turanose ChEBI	+	carbon source
[Ref.: #43639]	uridine ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #43639]	ampicillin ChEBI	yes	10	µg (disc)
[Ref.: #43639]	chloramphenicol ChEBI	yes	30	µg (disc)
[Ref.: #43639]	erythromycin ChEBI	yes	15	µg (disc)
[Ref.: #43639]	gentamicin ChEBI				yes	10	µg (disc)
[Ref.: #43639]	kanamycin ChEBI				yes	30	µg (disc)
[Ref.: #43639]	penicillin g ChEBI				yes	10	Unit (disc)
[Ref.: #43639]	rifampicin ChEBI	yes	30	µg (disc)
[Ref.: #43639]	streptomycin ChEBI				yes	10	µg (disc)
[Ref.: #43639]	tetracycline ChEBI	yes	30	µg (disc)
[Ref.: #43639]	vancomycin ChEBI	yes	30	µg (disc)

	Enzyme	Enzyme activity	EC number
[Ref.: #43639]	acid phosphatase	+	3.1.3.2
[Ref.: #43639]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43639]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43639]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43639]	alpha-galactosidase	+	3.2.1.22
[Ref.: #43639]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43639]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43639]	beta-galactosidase	+	3.2.1.23
[Ref.: #43639]	beta-glucosidase	+	3.2.1.21
[Ref.: #43639]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43639]	cystine arylamidase	+	3.4.11.3
[Ref.: #43639]	esterase (C 4)	+
[Ref.: #43639]	esterase Lipase (C 8)	+
[Ref.: #43639]	leucine arylamidase	+	3.4.11.1
[Ref.: #43639]	lipase (C 14)	-
[Ref.: #43639]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #43639]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43639]	trypsin	+	3.4.21.4
[Ref.: #43639]	urease	+	3.5.1.5
[Ref.: #43639]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43639]

Fatty acid	Percentage
C16:1ω7c / C16:1ω6c	39.6
C15:0 iso	31
C16:1ω5c	5.9
C17:0 iso 3OH	5.2
C16:0	2.6
C16:0 3OH	2.4
C15:1ω6c	1.8
anteiso-C17:1B / iso-C17:1I	1.7
C16:0-10-methyl / iso-C17:1ω9c	1.5
C18:0	1.3
C15:0 iso 3OH	1.3

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43639]	Sample type/isolated from	coastal seawater of the East Sea
[Ref.: #43639]	Geographic location (country and/or sea, region)	East Sea
[Ref.: #43639]	Country	Republic of Korea
[Ref.: #43639]	Country ISO 3 Code	KOR
[Ref.: #43639]	Continent	Asia
[Ref.: #43639]	Geographic location	36.3680°/129.3950°

[Ref.: #67771]	Sample type/isolated from	From coastal seawater
[Ref.: #67771]	Geographic location (country and/or sea, region)	Yeongdeok
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
[Ref.: #67771]	Geographic location	36.3681°/129.3960°
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Terrestrial	#Coast

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JX272928 (>99% sequence identity) for Hymenobacter marinus from Microbeatlas

Aquatic Samples	7
Soil Samples	10
Animal Samples	112
Plant Samples	12
Total Samples	141

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43639]	16S rRNA gene sequence	JX272928		GenBank

[Ref.: #43639]	GC-content	61 mol%	Thermal denaturation, fluorometry
[Ref.: #67771]	GC-content	61.0 mol%

Availability in culture collections External links

[Ref.: #43639]

Culture collection no.

KCTC 42854, CECT 9069

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Hymenobacter baengnokdamensis sp. nov., Isolated from the Soil of a Crater Lake in Korea.	Lee JH, Kim MK, Jung JH, Seo HS, Zhang J, Choe HN, Choi S, Seong CN, Lim S	Curr Microbiol	10.1007/s00284-020-02225-7	2020	*
Phylogeny	Hymenobacter polaris sp. nov., a psychrotolerant bacterium isolated from an Arctic station.	Dahal RH, Chaudhary DK, Kim DU, Kim J	Int J Syst Evol Microbiol	10.1099/ijsem.0.004356	2020	*
Phylogeny	Hymenobacter pomorum sp. nov., Isolated from Apple Orchard Soil.	Ten LN, Li W, Lee SY, Kang IK, Cho YJ, Kim MK, Jung HY	Curr Microbiol	10.1007/s00284-018-1595-9	2018	*
Phylogeny	Hymenobacter rivuli sp. nov., isolated from a freshwater creek.	Sheu SY, Hsieh TY, Kwon SW, Chen WM	Int J Syst Evol Microbiol	10.1099/ijsem.0.002657	2018	*
Phylogeny	Hymenobacter marinus sp. nov., isolated from coastal seawater.	Kang H, Kim H, Joung Y, Kim KJ, Joh K	Int J Syst Evol Microbiol	10.1099/ijsem.0.001011	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43639

Heeyoung Kang, Haneul Kim, Yochan Joung, Kyu-Joong Kim, Kiseong Joh: Hymenobacter marinus sp. nov., isolated from coastal seawater. IJSEM 66: 2212 - 2217 2016 ( DOI 10.1099/ijsem.0.001011 , PubMed 26961718 )

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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