Name: Comamonas sediminis S3
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140817

Type strain:

Species: Comamonas sediminis

Strain Designation: S3

Culture col. no.: KEMB 563-466, JCM 31169

Strain history: S.-S. Lee; KEMB, Kyonggi Univ., South Korea; S3.

NCBI tax ID(s): 1783360 (species)

Section

Comamonas sediminis S3 is an aerobe, chemoorganoheterotroph, Gram-negative bacterium that was isolated from lagoon sediments .

Gram-negative
rod-shaped
aerobe
chemoorganoheterotroph
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Comamonadaceae*
	Genus	*Comamonas*
	Species	**Comamonas sediminis**
	Full Scientific Name (PNU)	Comamonas sediminis Subhash et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43607]	Gram stain	negative
[Ref.: #43607]	Cell length	1.9-2.1 µm
[Ref.: #43607]	Cell width	0.3-0.7 µm
[Ref.: #43607]	Cell shape	rod-shaped
[Ref.: #43607]	Motility	no

[Ref.: #43607]	Colony color	transparent
[Ref.: #43607]	Cultivation medium used	Agar plates

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43607]

Culture medium

Agar plates

[Ref.: #43607]

Culture medium growth

		Temperature
[Ref.: #43607]	growth	12-45 °C
[Ref.: #43607]	optimum	30-35 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #43607]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH	pH range
[Ref.: #43607]			optimum	6.5-7.7
[Ref.: #43607]			growth	6.1-8.8	alkaliphile

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43607]

Oxygen tolerance

aerobe

[Ref.: #43607]

Nutrition type

chemoorganoheterotroph

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43607]		NaCl		growth	0-3.5	%
[Ref.: #43607]		NaCl		optimum	0-1.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43607]	aspartate ChEBI	+	growth
[Ref.: #43607]	casein	+	hydrolysis
[Ref.: #43607]	cellobiose ChEBI	-	builds acid from
[Ref.: #43607]	cellobiose ChEBI	-	growth
[Ref.: #43607]	chitin ChEBI	-	hydrolysis
[Ref.: #43607]	D-fructose ChEBI	-	builds acid from
[Ref.: #43607]	D-fructose ChEBI	-	growth
[Ref.: #43607]	D-glucose ChEBI	+	builds acid from
[Ref.: #43607]	D-glucose ChEBI	+	growth
[Ref.: #43607]	D-mannitol ChEBI	+	builds acid from
[Ref.: #43607]	D-mannitol ChEBI	+	growth
[Ref.: #43607]	D-sorbitol ChEBI	+	growth
[Ref.: #43607]	gelatin ChEBI	-	hydrolysis
[Ref.: #43607]	L-arabinose ChEBI	+	builds acid from
[Ref.: #43607]	L-glutamate ChEBI	+	growth
[Ref.: #43607]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #43607]	L-rhamnose ChEBI	-	growth
[Ref.: #43607]	maltose ChEBI	-	builds acid from
[Ref.: #43607]	maltose ChEBI	-	growth
[Ref.: #43607]	melibiose ChEBI	+	builds acid from
[Ref.: #43607]	raffinose ChEBI	-	builds acid from
[Ref.: #43607]	starch ChEBI	+	hydrolysis
[Ref.: #43607]	sucrose ChEBI	+	builds acid from
[Ref.: #43607]	sucrose ChEBI	+	growth
[Ref.: #43607]	tryptophan ChEBI	-	energy source
[Ref.: #43607]	tween 20 ChEBI	+	hydrolysis
[Ref.: #43607]	tween 80 ChEBI	-	hydrolysis
[Ref.: #43607]	urea ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #43607]	ampicillin ChEBI				yes	100	µg
[Ref.: #43607]	chloramphenicol ChEBI				yes	100	µg
[Ref.: #43607]	nalidixic acid ChEBI	yes	100	µg (disc)
[Ref.: #43607]	penicillin g ChEBI				yes	100	µg
[Ref.: #43607]	rifampicin ChEBI				yes	100	µg

	Metabolite production	Metabolite
[Ref.: #43607]		indole ChEBI

	Physiological tests	Metabolite	Indole test
[Ref.: #43607]		indole ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #43607]	acid phosphatase	-	3.1.3.2
[Ref.: #43607]	alkaline phosphatase	-	3.1.3.1
[Ref.: #43607]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43607]	alpha-fucosidase	+	3.2.1.51
[Ref.: #43607]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43607]	alpha-glucosidase	-	3.2.1.20
[Ref.: #43607]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43607]	beta-galactosidase	-	3.2.1.23
[Ref.: #43607]	beta-glucosidase	+	3.2.1.21
[Ref.: #43607]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43607]	catalase	+	1.11.1.6
[Ref.: #43607]	cystine arylamidase	+	3.4.11.3
[Ref.: #43607]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43607]	esterase (C 4)	+
[Ref.: #43607]	esterase Lipase (C 8)	+
[Ref.: #43607]	leucine arylamidase	-	3.4.11.1
[Ref.: #43607]	lipase (C 14)	-
[Ref.: #43607]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #43607]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43607]	trypsin	-	3.4.21.4
[Ref.: #43607]	tryptophan deaminase	-	4.1.99.1
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43607]	Sample type/isolated from	lagoon sediments (pH 7.5)
[Ref.: #43607]	Geographic location (country and/or sea, region)	North Carolina
[Ref.: #43607]	Country	USA
[Ref.: #43607]	Country ISO 3 Code	USA
[Ref.: #43607]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	Lagoon sediments
[Ref.: #67770]	Geographic location (country and/or sea, region)	NC
[Ref.: #67770]	Country	USA
[Ref.: #67770]	Country ISO 3 Code	USA
[Ref.: #67770]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43607]	16S rRNA gene sequence	LT009500		GenBank

[Ref.: #43607]

GC-content

68.3 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #43607]

Culture collection no.

KEMB 563-466, JCM 31169

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Description of Comamonas sediminis sp. nov., isolated from lagoon sediments.	Subhash Y, Bang JJ, You TH, Lee SS	Int J Syst Evol Microbiol	10.1099/ijsem.0.001115	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43607

Y. Subhash, John J. Bang, Taek H. You, Sang-Seob Lee: Description of Comamonas sediminis sp. nov., isolated from lagoon sediments. IJSEM 66: 2735 - 2739 2016 ( DOI 10.1099/ijsem.0.001115 , PubMed 27117992 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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