Name: Cribrihabitans pelagius KMU-32
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140814

Type strain:

Species: Cribrihabitans pelagius

Strain Designation: KMU-32

Culture col. no.: KCTC 42980, NBRC 111834, DSM 108273, KCTC 42981

Strain history: <- Y. Muramatsu, NBRC; NBRC 111834 <- J. Yoon; Keimyung University, Daegu; KMU-32

NCBI tax ID(s): 1765746 (species)

Section

Cribrihabitans pelagius KMU-32 is an obligate aerobe, chemoheterotroph, mesophilic bacterium that forms circular colonies and was isolated from seawater.

colony-forming
Gram-negative
motile
rod-shaped
chemoheterotroph
mesophilic
obligate aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	Rhodobacteraceae
	Genus	*Cribrihabitans*
	Species	**Cribrihabitans pelagius**
	Full Scientific Name (PNU)	Cribrihabitans pelagius Yoon et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43601]	Gram stain	negative
[Ref.: #43601]	Cell length	1.8-2 µm
[Ref.: #43601]	Cell width	0.7-0.8 µm
[Ref.: #43601]	Cell shape	rod-shaped
[Ref.: #43601]	Motility	yes
[Ref.: #43601]	Flagellum arrangement	lophotrichous

[Ref.: #43601]	Colony color	Cream coloured
[Ref.: #43601]	Colony shape	circular
[Ref.: #43601]	Incubation period	3 days
[Ref.: #43601]	Cultivation medium used	Marine agar 2216

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43601]

Culture medium

Marine agar (MA)

[Ref.: #43601]

Culture medium growth

[Ref.: #64819]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #64819]

Culture medium growth

[Ref.: #64819]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #64819]

Culture medium composition

expand / minimize

	Kind of temperature		Temperature
[Ref.: #43601]		growth	25-37 °C
[Ref.: #43601]	no	growth	4 °C
[Ref.: #43601]	no	growth	45 °C
[Ref.: #43601]		optimum	30 °C
[Ref.: #64819]		growth	30 °C

[Ref.: #43601]	Temperature range	mesophilic
[Ref.: #43601]	Temperature range	psychrophilic
[Ref.: #43601]	Temperature range	thermophilic
[Ref.: #43601]	Temperature range	mesophilic
[Ref.: #64819]	Temperature range	mesophilic

	pH	Kind of pH		pH	pH range
[Ref.: #43601]			optimum	7
[Ref.: #43601]			growth	6-9	alkaliphile

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43601]

Oxygen tolerance

obligate aerobe

[Ref.: #43601]

Nutrition type

chemoheterotroph

	Salt	Tested relation		Salt conc.
[Ref.: #43601]	NaCl		maximum	6	%(w/v)
[Ref.: #43601]	NaCl	no	growth	7	%(w/v)
[Ref.: #43601]	NaCl		optimum	3	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43601]	2-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #43601]	5-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #43601]	agar ChEBI	-	hydrolysis
[Ref.: #43601]	amygdalin ChEBI	-	builds acid from
[Ref.: #43601]	arbutin ChEBI	-	builds acid from
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #43601]	casein	-	hydrolysis
[Ref.: #43601]	cellobiose ChEBI	-	builds acid from
[Ref.: #43601]	citrate ChEBI	+	assimilation
[Ref.: #43601]	D-arabinose ChEBI	-	builds acid from
[Ref.: #43601]	D-arabitol ChEBI	-	builds acid from
[Ref.: #43601]	D-fucose ChEBI	+	builds acid from
[Ref.: #68369]	D-glucose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #43601]	D-lyxose ChEBI	-	builds acid from
[Ref.: #43601]	D-tagatose ChEBI	-	builds acid from
[Ref.: #43601]	D-xylose ChEBI	-	builds acid from
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #43601]	dna ChEBI	-	hydrolysis
[Ref.: #43601]	erythritol ChEBI	-	builds acid from
[Ref.: #43601]	esculin ChEBI	+	builds acid from
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #43601]	ferric citrate ChEBI	+	builds acid from
[Ref.: #43601]	fructose ChEBI	-	builds acid from
[Ref.: #43601]	galactitol ChEBI	-	builds acid from
[Ref.: #43601]	galactose ChEBI	-	builds acid from
[Ref.: #43601]	gelatin ChEBI	+	hydrolysis
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #43601]	gentiobiose ChEBI	-	builds acid from
[Ref.: #43601]	gluconate ChEBI	-	builds acid from
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #43601]	glucose ChEBI	-	builds acid from
[Ref.: #43601]	glycerol 3-phosphate ChEBI	-	builds acid from
[Ref.: #43601]	glycogen ChEBI	-	builds acid from
[Ref.: #43601]	inulin ChEBI	-	builds acid from
[Ref.: #43601]	L-arabinose ChEBI	-	builds acid from
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #43601]	L-arabitol ChEBI	-	builds acid from
[Ref.: #43601]	L-fucose ChEBI	-	builds acid from
[Ref.: #43601]	L-xylose ChEBI	-	builds acid from
[Ref.: #43601]	lactose ChEBI	+	builds acid from
[Ref.: #68369]	malate ChEBI	-	assimilation	* from API 20NE
[Ref.: #43601]	maltose ChEBI	+	builds acid from
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #43601]	mannitol ChEBI	-	builds acid from
[Ref.: #43601]	mannose ChEBI	+	builds acid from
[Ref.: #43601]	melezitose ChEBI	-	builds acid from
[Ref.: #43601]	melibiose ChEBI	+	builds acid from
[Ref.: #43601]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from
[Ref.: #43601]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #43601]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #43601]	myo-inositol ChEBI	-	builds acid from
[Ref.: #43601]	N-acetylglucosamine ChEBI	-	builds acid from
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #43601]	nitrate ChEBI	-	reduction
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #43601]	raffinose ChEBI	-	builds acid from
[Ref.: #43601]	rhamnose ChEBI	-	builds acid from
[Ref.: #43601]	ribitol ChEBI	-	builds acid from
[Ref.: #43601]	ribose ChEBI	-	builds acid from
[Ref.: #43601]	salicin ChEBI	+	builds acid from
[Ref.: #43601]	sorbitol ChEBI	-	builds acid from
[Ref.: #43601]	sorbose ChEBI	-	builds acid from
[Ref.: #43601]	starch ChEBI	-	builds acid from
[Ref.: #43601]	starch ChEBI	-	hydrolysis
[Ref.: #43601]	sucrose ChEBI	+	builds acid from
[Ref.: #43601]	trehalose ChEBI	-	builds acid from
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #43601]	turanose ChEBI	-	builds acid from
[Ref.: #43601]	tween 20 ChEBI	-	hydrolysis
[Ref.: #43601]	tween 80 ChEBI	-	hydrolysis
[Ref.: #43601]	tyrosine ChEBI	-	hydrolysis
[Ref.: #43601]	urea ChEBI	+	hydrolysis
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #43601]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite
[Ref.: #43601]	acetoin ChEBI
[Ref.: #43601]	hydrogen sulfide ChEBI
[Ref.: #43601]	indole ChEBI
[Ref.: #68369]	indole ChEBI	* from API 20NE

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #43601]		acetoin ChEBI	+
[Ref.: #68369]		indole ChEBI		-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #43601]	acid phosphatase	-	3.1.3.2
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #43601]	alkaline phosphatase	-	3.1.3.1
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #43601]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #43601]	alpha-fucosidase	-	3.2.1.51
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #43601]	alpha-galactosidase	-	3.2.1.22
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #43601]	alpha-glucosidase	-	3.2.1.20
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #43601]	alpha-mannosidase	-	3.2.1.24
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #43601]	arginine dihydrolase	+	3.5.3.6
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #43601]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #43601]	beta-glucosidase	-	3.2.1.21
[Ref.: #68369]	beta-glucosidase	-	3.2.1.21	* from API 20NE
[Ref.: #43601]	beta-glucuronidase	-	3.2.1.31
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #43601]	cystine arylamidase	-	3.4.11.3
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #43601]	esterase (C 4)	+
[Ref.: #43601]	esterase Lipase (C 8)	+
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #43601]	leucine arylamidase	+	3.4.11.1
[Ref.: #43601]	lipase (C 14)	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #43601]	lysine decarboxylase	-	4.1.1.18
[Ref.: #43601]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #43601]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43601]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #43601]	trypsin	-	3.4.21.4
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE
[Ref.: #43601]	valine arylamidase	-
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43601]

Fatty acid	Percentage
C17:0 anteiso	55.9
C16:0 iso	23
C15:0 anteiso	13.1
C15:0 iso	3.7
C17:0 iso	2.5
C16:0	1.2

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #64819]	22157	-	-	-	-	-	-	-	+	-	-	+/-	+/-	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #64819]	6275	-	-	+/-	-	-	+/-	-	-	-	-	+	+/-	-	-	-	+	+/-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43601]	Sample type/isolated from	seawater
[Ref.: #43601]	Geographic location (country and/or sea, region)	Najeong Beach, Gyeongsangbuk-do
[Ref.: #43601]	Country	Republic of Korea
[Ref.: #43601]	Country ISO 3 Code	KOR
[Ref.: #43601]	Continent	Asia
[Ref.: #43601]	Isolation date	2015-08

[Ref.: #64819]	Sample type/isolated from	Seawater
[Ref.: #64819]	Geographic location (country and/or sea, region)	Najeong Beach, Gyeongsangbuk-do
[Ref.: #64819]	Country	Republic of Korea
[Ref.: #64819]	Country ISO 3 Code	KOR
[Ref.: #64819]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #64819]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43601]	16S rRNA gene sequence	LC101916		GenBank

[Ref.: #43601]

GC-content

63.7 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #64819]

Culture collection no.

KCTC 42980, NBRC 111834, DSM 108273, KCTC 42981

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Cribrihabitans pelagius sp. nov., a marine alphaproteobacterium isolated from seawater.	Yoon J, Lee KC, Lee JS	Int J Syst Evol Microbiol	10.1099/ijsem.0.001171	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43601

Jaewoo Yoon, Keun Chul Lee, Jung-Sook Lee: Cribrihabitans pelagius sp. nov., a marine alphaproteobacterium isolated from seawater. IJSEM 66: 3195 - 3200 2016 ( DOI 10.1099/ijsem.0.001171 , PubMed 27216538 )

#64819

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 108273

#68369

Automatically annotated from API 20NE .

#68382

Automatically annotated from API zym .

* These data were automatically processed and therefore are not curated

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