Name: Sphingobacterium corticis 23D10-4-9
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140793

Type strain:

Species: Sphingobacterium corticis

Strain Designation: 23D10-4-9

Culture col. no.: CFCC 12640, KCTC 42248, CFCC 12460

Strain history: <- Yong Li, Dongxiaoful, Haidian district, Beijing, China

NCBI tax ID(s): 1812823 (species)

Section

Sphingobacterium corticis 23D10-4-9 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from canker bark tissue of Populus x euramericana.

colony-forming
Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Sphingobacteriia*
	Order	*Sphingobacteriales*
	Family	*Sphingobacteriaceae*
	Genus	*Sphingobacterium*
	Species	**Sphingobacterium corticis**
	Full Scientific Name (LPSN)	Sphingobacterium corticis Li et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43571]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #43571]	Cell length	1.5 µm

[Ref.: #43571]	Cell width	0.76 µm

[Ref.: #43571]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #43571]	Motility	no
[Ref.: #67771]	Motility	no

[Ref.: #43571]	Colony size	2 mm
[Ref.: #43571]	Colony color	Pale yellow
[Ref.: #43571]	Colony shape	circular
[Ref.: #43571]	Incubation period	2 days
[Ref.: #43571]	Cultivation medium used	TSA agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43571]

Culture medium

Trypticase Soy Agar (TSA)

[Ref.: #43571]

Culture medium growth

		Temperature
[Ref.: #43571]	growth	4-35 °C
[Ref.: #43571]	optimum	25 °C
[Ref.: #67771]	growth	28 °C

[Ref.: #43571]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43571]			optimum	7-8
[Ref.: #43571]			growth	6-11

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43571]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43571]		NaCl		growth	0-5	%(w/v)

[Ref.: #67771]

Observation

quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43571]	alpha-D-glucose ChEBI	+	respiration
[Ref.: #43571]	amygdalin ChEBI	-	builds acid from
[Ref.: #43571]	amygdalin ChEBI	+	builds acid from
[Ref.: #43571]	arbutin ChEBI	+	builds acid from
[Ref.: #43571]	cellobiose ChEBI	+	builds acid from
[Ref.: #43571]	cellobiose ChEBI	+	respiration
[Ref.: #43571]	citrate ChEBI	-	assimilation
[Ref.: #43571]	D-arabinose ChEBI	-	builds acid from
[Ref.: #43571]	D-arabitol ChEBI	-	builds acid from
[Ref.: #43571]	D-fructose ChEBI	+	builds acid from
[Ref.: #43571]	D-fructose ChEBI	+	respiration
[Ref.: #43571]	D-fucose ChEBI	-	builds acid from
[Ref.: #43571]	D-galactose ChEBI	+	builds acid from
[Ref.: #43571]	D-galactose ChEBI	+	respiration
[Ref.: #43571]	D-glucose ChEBI	+	builds acid from
[Ref.: #43571]	D-glucose 6-phosphate ChEBI	+	respiration
[Ref.: #43571]	D-lyxose ChEBI	-	builds acid from
[Ref.: #43571]	D-mannitol ChEBI	-	builds acid from
[Ref.: #43571]	D-mannose ChEBI	+	builds acid from
[Ref.: #43571]	D-mannose ChEBI	+	respiration
[Ref.: #43571]	D-ribose ChEBI	-	builds acid from
[Ref.: #43571]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #43571]	D-tagatose ChEBI	-	builds acid from
[Ref.: #43571]	D-xylose ChEBI	-	builds acid from
[Ref.: #43571]	dextrin ChEBI	+	respiration
[Ref.: #43571]	erythritol ChEBI	-	builds acid from
[Ref.: #43571]	esculin ferric citrate	+	builds acid from
[Ref.: #43571]	galactitol ChEBI	-	builds acid from
[Ref.: #43571]	gentiobiose ChEBI	-	builds acid from
[Ref.: #43571]	gentiobiose ChEBI	+	respiration
[Ref.: #43571]	glycerol ChEBI	-	builds acid from
[Ref.: #43571]	glycogen ChEBI	-	builds acid from
[Ref.: #43571]	inulin ChEBI	-	builds acid from
[Ref.: #43571]	L-arabinose ChEBI	-	builds acid from
[Ref.: #43571]	L-arabinose ChEBI	+	respiration
[Ref.: #43571]	L-fucose ChEBI	-	builds acid from
[Ref.: #43571]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #43571]	L-sorbose ChEBI	-	builds acid from
[Ref.: #43571]	L-threonine ChEBI	+	respiration
[Ref.: #43571]	L-xylose ChEBI	-	builds acid from
[Ref.: #43571]	lactose ChEBI	+	builds acid from
[Ref.: #43571]	lactose ChEBI	+	respiration
[Ref.: #43571]	maltose ChEBI	+	respiration
[Ref.: #43571]	maltose hydrate	+	builds acid from
[Ref.: #43571]	melezitose ChEBI	-	builds acid from
[Ref.: #43571]	melibiose ChEBI	-	builds acid from
[Ref.: #43571]	melibiose ChEBI	+	respiration
[Ref.: #43571]	methyl alpha-D-glucopyranoside ChEBI	+	builds acid from
[Ref.: #43571]	methyl alpha-D-mannoside ChEBI	+	builds acid from
[Ref.: #43571]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #43571]	methyl D-glucoside ChEBI	+	respiration
[Ref.: #43571]	methyl pyruvate ChEBI	+	respiration
[Ref.: #43571]	myo-inositol ChEBI	-	builds acid from
[Ref.: #43571]	N-acetylglucosamine ChEBI	+	builds acid from
[Ref.: #43571]	N-acetylglucosamine ChEBI	+	respiration
[Ref.: #43571]	nitrate ChEBI	-	reduction
[Ref.: #43571]	potassium 2-dehydro-D-gluconate	-	builds acid from
[Ref.: #43571]	potassium 5-dehydro-D-gluconate	-	builds acid from
[Ref.: #43571]	potassium gluconate ChEBI	-	builds acid from
[Ref.: #43571]	raffinose ChEBI	-	builds acid from
[Ref.: #43571]	ribitol ChEBI	-	builds acid from
[Ref.: #43571]	salicin ChEBI	+	builds acid from
[Ref.: #43571]	starch ChEBI	-	builds acid from
[Ref.: #43571]	sucrose ChEBI	-	builds acid from
[Ref.: #43571]	sucrose ChEBI	+	respiration
[Ref.: #43571]	trehalose ChEBI	-	builds acid from
[Ref.: #43571]	trehalose ChEBI	+	respiration
[Ref.: #43571]	turanose ChEBI	-	builds acid from
[Ref.: #43571]	turanose ChEBI	+	respiration
[Ref.: #43571]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #43571]	acetoin ChEBI	yes
[Ref.: #43571]	hydrogen sulfide ChEBI	no
[Ref.: #43571]	indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43571]	acid phosphatase	+	3.1.3.2
[Ref.: #43571]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43571]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #43571]	alpha-galactosidase	+	3.2.1.22
[Ref.: #43571]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43571]	alpha-mannosidase	+	3.2.1.24
[Ref.: #43571]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43571]	beta-galactosidase	+	3.2.1.23
[Ref.: #43571]	beta-glucosidase	+	3.2.1.21
[Ref.: #43571]	catalase	+	1.11.1.6
[Ref.: #43571]	cytochrome oxidase	-	1.9.3.1
[Ref.: #43571]	esterase (C 4)	+
[Ref.: #43571]	esterase Lipase (C 8)	+
[Ref.: #43571]	gelatinase	-
[Ref.: #43571]	leucine arylamidase	+	3.4.11.1
[Ref.: #43571]	lysine decarboxylase	-	4.1.1.18
[Ref.: #43571]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #43571]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43571]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #43571]	trypsin	+	3.4.21.4
[Ref.: #43571]	tryptophan deaminase	-	4.1.99.1
[Ref.: #43571]	urease	-	3.5.1.5
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43571]	Sample type/isolated from	canker bark tissue of Populus x euramericana
[Ref.: #43571]	Geographic location (country and/or sea, region)	Qingfeng, Puyang City, Henan province
[Ref.: #43571]	Country	China
[Ref.: #43571]	Country ISO 3 Code	CHN
[Ref.: #43571]	Continent	Asia
[Ref.: #43571]	Isolation date	2013-08

[Ref.: #67771]	Sample type/isolated from	From symptomatic canker bark tissue of `Populus Ã— euramericana`
[Ref.: #67771]	Geographic location (country and/or sea, region)	Qingfeng, Puyang City, Henan Province
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Bark

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43571]	16S rRNA gene sequence	KT988033		GenBank

[Ref.: #43571]	GC-content	40.6 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67771]	GC-content	40.6 mol%

Availability in culture collections External links

[Ref.: #43571]

Culture collection no.

CFCC 12640, KCTC 42248, CFCC 12460

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sphingobacterium corticis sp. nov., isolated from bark of Populus x euramericana.	Li Y, Xu GT, Chang JP, Guo LM, Yang XQ, Piao CG	Int J Syst Evol Microbiol	10.1099/ijsem.0.002210	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43571

Yong Li, Guan-tang Xu, Ju-pu Chang, Li-min Guo, Xu-qi Yang, Chun-gen Piao: Sphingobacterium corticis sp. nov., isolated from bark of Populus × euramericana. IJSEM 67: 3860 - 3864 2017 ( DOI 10.1099/ijsem.0.002210 , PubMed 28884658 )

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Sphingobacterium corticis in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF