Sphingobacterium corticis (CFCC 12640, KCTC 42248, 23D10-4-9)

Name: Sphingobacterium corticis (CFCC 12640, KCTC 42248, 23D10-4-9)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140793

Type strain

Strain Designation 23D10-4-9

Culture col. no. CFCC 12640 KCTC 42248 23D10-4-9 CFCC 12460

NCBI tax ID(s) 1812823

Special Collections KCTC Literature strains

History <- Yong Li, Dongxiaoful, Haidian district, Beijing, China

Links

Sphingobacterium corticis 23D10-4-9 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from canker bark tissue of Populus x euramericana.

Gram-negative rod-shaped colony-forming aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 26839

KCTC 42248

@ref 20215

Last LPSN update 2026-02-09 11:33:42

Domain Bacteria

Phylum Bacteroidota

Class Sphingobacteriia

Order Sphingobacteriales

Family Sphingobacteriaceae

Genus Sphingobacterium

Species Sphingobacterium corticis

Full scientific name Sphingobacterium corticis Li et al. 2017

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape
43571	negative	1.5 µm	0.76 µm	rod-shaped
67771				rod-shaped
67771	negative

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
43571	2 mm	Pale yellow	circular	2 days	TSA agar

Culture and growth conditions

Culture medium

@ref	Name	Growth
43571	Trypticase Soy Agar (TSA)

Culture temp

@ref	Growth	Type	Temperature (°C)
43571	positive	growth	4-35
43571	positive	optimum	25
67771	positive	growth	28

Culture pH

@ref	Ability	Type	PH	PH range
43571	positive	optimum	7-8
43571	positive	growth	6-11	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
43571	aerobe
67771	aerobe

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43571	NaCl	positive	growth	0-5 %(w/v)

Observation

67771

Observationquinones: MK-7

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43571	17925 ChEBI	alpha-D-glucose	+	respiration
43571	27613 ChEBI	amygdalin	-	builds acid from
43571	27613 ChEBI	amygdalin	+	builds acid from
43571	18305 ChEBI	arbutin	+	builds acid from
43571	17057 ChEBI	cellobiose	+	builds acid from
43571	17057 ChEBI	cellobiose	+	respiration
43571	16947 ChEBI	citrate	-	assimilation
43571	17108 ChEBI	D-arabinose	-	builds acid from
43571	18333 ChEBI	D-arabitol	-	builds acid from
43571	15824 ChEBI	D-fructose	+	builds acid from
43571	15824 ChEBI	D-fructose	+	respiration
43571	28847 ChEBI	D-fucose	-	builds acid from
43571	12936 ChEBI	D-galactose	+	builds acid from
43571	12936 ChEBI	D-galactose	+	respiration
43571	17634 ChEBI	D-glucose	+	builds acid from
43571	14314 ChEBI	D-glucose 6-phosphate	+	respiration
43571	62318 ChEBI	D-lyxose	-	builds acid from
43571	16899 ChEBI	D-mannitol	-	builds acid from
43571	16024 ChEBI	D-mannose	+	builds acid from
43571	16024 ChEBI	D-mannose	+	respiration
43571	16988 ChEBI	D-ribose	-	builds acid from
43571	17924 ChEBI	D-sorbitol	-	builds acid from
43571	16443 ChEBI	D-tagatose	-	builds acid from
43571	65327 ChEBI	D-xylose	-	builds acid from
43571	23652 ChEBI	dextrin	+	respiration
43571	17113 ChEBI	erythritol	-	builds acid from
43571		esculin ferric citrate	+	builds acid from
43571	16813 ChEBI	galactitol	-	builds acid from
43571	28066 ChEBI	gentiobiose	-	builds acid from
43571	28066 ChEBI	gentiobiose	+	respiration
43571	17754 ChEBI	glycerol	-	builds acid from
43571	28087 ChEBI	glycogen	-	builds acid from
43571	15443 ChEBI	inulin	-	builds acid from
43571	30849 ChEBI	L-arabinose	-	builds acid from
43571	30849 ChEBI	L-arabinose	+	respiration
43571	18287 ChEBI	L-fucose	-	builds acid from
43571	62345 ChEBI	L-rhamnose	-	builds acid from
43571	17266 ChEBI	L-sorbose	-	builds acid from
43571	16857 ChEBI	L-threonine	+	respiration
43571	65328 ChEBI	L-xylose	-	builds acid from
43571	17716 ChEBI	lactose	+	builds acid from
43571	17716 ChEBI	lactose	+	respiration
43571	17306 ChEBI	maltose	+	respiration
43571		maltose hydrate	+	builds acid from
43571	6731 ChEBI	melezitose	-	builds acid from
43571	28053 ChEBI	melibiose	-	builds acid from
43571	28053 ChEBI	melibiose	+	respiration
43571	320061 ChEBI	methyl alpha-D-glucopyranoside	+	builds acid from
43571	43943 ChEBI	methyl alpha-D-mannoside	+	builds acid from
43571	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from
43571	37657 ChEBI	methyl D-glucoside	+	respiration
43571	51850 ChEBI	methyl pyruvate	+	respiration
43571	17268 ChEBI	myo-inositol	-	builds acid from
43571	506227 ChEBI	N-acetylglucosamine	+	builds acid from
43571	506227 ChEBI	N-acetylglucosamine	+	respiration
43571	17632 ChEBI	nitrate	-	reduction
43571		potassium 2-dehydro-D-gluconate	-	builds acid from
43571		potassium 5-dehydro-D-gluconate	-	builds acid from
43571	32032 ChEBI	potassium gluconate	-	builds acid from
43571	16634 ChEBI	raffinose	-	builds acid from
43571	15963 ChEBI	ribitol	-	builds acid from
43571	17814 ChEBI	salicin	+	builds acid from
43571	28017 ChEBI	starch	-	builds acid from
43571	17992 ChEBI	sucrose	-	builds acid from
43571	17992 ChEBI	sucrose	+	respiration
43571	27082 ChEBI	trehalose	-	builds acid from
43571	27082 ChEBI	trehalose	+	respiration
43571	32528 ChEBI	turanose	-	builds acid from
43571	32528 ChEBI	turanose	+	respiration
43571	17151 ChEBI	xylitol	-	builds acid from

Metabolite production

@ref	Chebi-ID	Metabolite
43571	15688 ChEBI	acetoin
43571	16136 ChEBI	hydrogen sulfide
43571	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
43571	acid phosphatase	+	3.1.3.2
43571	alkaline phosphatase	+	3.1.3.1
43571	alpha-chymotrypsin	+	3.4.21.1
43571	alpha-galactosidase	+	3.2.1.22
43571	alpha-glucosidase	+	3.2.1.20
43571	alpha-mannosidase	+	3.2.1.24
43571	arginine dihydrolase	-	3.5.3.6
43571	beta-galactosidase	+	3.2.1.23
43571	beta-glucosidase	+	3.2.1.21
43571	catalase	+	1.11.1.6
43571	cytochrome oxidase	-	1.9.3.1
43571	esterase (C 4)	+
43571	esterase Lipase (C 8)	+
43571	gelatinase	-
43571	leucine arylamidase	+	3.4.11.1
43571	lysine decarboxylase	-	4.1.1.18
43571	N-acetyl-beta-glucosaminidase	+	3.2.1.52
43571	naphthol-AS-BI-phosphohydrolase	+
43571	ornithine decarboxylase	-	4.1.1.17
43571	trypsin	+	3.4.21.4
43571	tryptophan deaminase	-	4.1.99.1
43571	urease	-	3.5.1.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Bark

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
43571	canker bark tissue of Populus x euramericana	Qingfeng, Puyang City, Henan province	China	CHN	Asia	2013-08
67771	From symptomatic canker bark tissue of `Populus Ã— euramericana`	Qingfeng, Puyang City, Henan Province	China	CHN	Asia

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM4268474v1 assembly for Sphingobacterium corticis KCTC 42248	contig	GCA_042684745	1812823	58.46

16S sequences

@ref	Description	Accession	Database
43571	Sphingobacterium corticis strain 23D10-4-9 16S ribosomal RNA gene, partial sequence	KT988033

GC content

@ref	GC-content (mol%)	Method
43571	40.6	high performance liquid chromatography (HPLC)
67771	40.6

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sphingobacterium corticis sp. nov., isolated from bark of Populus x euramericana.	Li Y, Xu GT, Chang JP, Guo LM, Yang XQ, Piao CG	Int J Syst Evol Microbiol	10.1099/ijsem.0.002210	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43571	Yong Li, Guan-tang Xu, Ju-pu Chang, Li-min Guo, Xu-qi Yang, Chun-gen Piao: Sphingobacterium corticis sp. nov., isolated from bark of Populus × euramericana. IJSEM 67: 3860 - 3864 2017 ( DOI 10.1099/ijsem.0.002210 , PubMed 28884658 )
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Sphingobacterium corticis (CFCC 12640, KCTC 42248, 23D10-4-9)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Halophily

Observation

Metabolite utilization

Metabolite production

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_042684745

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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