Name: Salinimicrobium flavum X7
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140792

Type strain:

Species: Salinimicrobium flavum

Strain Designation: X7

Culture col. no.: KCTC 42585, MCCC 1H00115

Strain history: <- Zongjun Du, Shandong Univ.

NCBI tax ID(s): 1737065 (species)

Section

Salinimicrobium flavum X7 is a facultative anaerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from marine sediment sample taken from the coast of Weihai.

colony-forming
Gram-negative
rod-shaped
facultative anaerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Salinimicrobium*
	Species	**Salinimicrobium flavum**
	Full Scientific Name (LPSN)	Salinimicrobium flavum Zhang et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43570]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #43570]	Cell length	0.6-1.8 µm

[Ref.: #43570]	Cell width	0.4-0.5 µm

[Ref.: #43570]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #43570]	Motility	no

[Ref.: #43570]	Colony size	0.6-1.5 mm
[Ref.: #43570]	Colony color	Yellow
[Ref.: #43570]	Colony shape	circular
[Ref.: #43570]	Incubation period	3 days
[Ref.: #43570]	Cultivation medium used	MA agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43570]

Culture medium

Marine agar (MA)

[Ref.: #43570]

Culture medium growth

		Temperature
[Ref.: #43570]	growth	4-45 °C
[Ref.: #43570]	optimum	28-30 °C
[Ref.: #67771]	growth	28-30 °C

[Ref.: #43570]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43570]			optimum	7
[Ref.: #43570]			growth	5.5-9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43570]	Oxygen tolerance	facultative anaerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #43570]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43570]		NaCl		growth	0-12	%(w/v)
[Ref.: #43570]		NaCl		optimum	2-3	%(w/v)

[Ref.: #67771]

Observation

quinones: MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43570]	agar ChEBI	-	hydrolysis
[Ref.: #43570]	alginate ChEBI	-	hydrolysis
[Ref.: #43570]	alpha-D-glucose ChEBI	+	assimilation
[Ref.: #43570]	carboxymethylcellulose ChEBI	-	hydrolysis
[Ref.: #43570]	cellobiose ChEBI	+	assimilation
[Ref.: #43570]	citrate ChEBI	+	assimilation
[Ref.: #43570]	D-fructose ChEBI	+	assimilation
[Ref.: #43570]	D-galactose ChEBI	+	assimilation
[Ref.: #43570]	D-glucose ChEBI	+	builds acid from
[Ref.: #43570]	D-glucose 6-phosphate ChEBI	+	assimilation
[Ref.: #43570]	D-mannitol ChEBI	+	assimilation
[Ref.: #43570]	D-mannose ChEBI	+	assimilation
[Ref.: #43570]	erythritol ChEBI	+	builds acid from
[Ref.: #43570]	esculin ChEBI	+	builds acid from
[Ref.: #43570]	gelatin ChEBI	+	assimilation
[Ref.: #43570]	gelatin ChEBI	+	hydrolysis
[Ref.: #43570]	gentiobiose ChEBI	+	assimilation
[Ref.: #43570]	glycine-proline ChEBI	+	assimilation
[Ref.: #43570]	glycogen ChEBI	+	builds acid from
[Ref.: #43570]	L-glutamate ChEBI	+	assimilation
[Ref.: #43570]	L-rhamnose ChEBI	+	assimilation
[Ref.: #43570]	lactose ChEBI	+	assimilation
[Ref.: #43570]	maltose ChEBI	+	assimilation
[Ref.: #43570]	maltose ChEBI	+	builds acid from
[Ref.: #43570]	nitrate ChEBI	-	reduction
[Ref.: #43570]	potassium 5-dehydro-D-gluconate	+	builds acid from
[Ref.: #43570]	raffinose ChEBI	+	assimilation
[Ref.: #43570]	starch ChEBI	+	builds acid from
[Ref.: #43570]	starch ChEBI	+	hydrolysis
[Ref.: #43570]	sucrose ChEBI	+	assimilation
[Ref.: #43570]	trehalose ChEBI	+	assimilation
[Ref.: #43570]	tween 20 ChEBI	+	hydrolysis
[Ref.: #43570]	tween 40 ChEBI	+	hydrolysis
[Ref.: #43570]	tween 60 ChEBI	+	hydrolysis
[Ref.: #43570]	tween 80 ChEBI	+	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #43570]	acetylspiramycin ChEBI	yes	30	µg (disc)
[Ref.: #43570]	ampicillin ChEBI	yes	10	µg (disc)
[Ref.: #43570]	clindamycin ChEBI	yes	30	µg (disc)
[Ref.: #43570]	erythromycin ChEBI	yes	15	µg (disc)
[Ref.: #43570]	gentamicin ChEBI				yes	10	µg (disc)
[Ref.: #43570]	lincomycin ChEBI	yes	2	µg (disc)
[Ref.: #43570]	nalidixic acid ChEBI	yes	30	µg (disc)
[Ref.: #43570]	neomycin ChEBI				yes	30	µg (disc)
[Ref.: #43570]	penicillin ChEBI	yes	10	µg (disc)
[Ref.: #43570]	rifampicin ChEBI	yes	5	µg (disc)
[Ref.: #43570]	streptomycin ChEBI				yes	10	µg (disc)
[Ref.: #43570]	sulfamethoxydiazine ChEBI				yes	10	µg (disc)
[Ref.: #43570]	tetracycline ChEBI				yes	30	µg (disc)
[Ref.: #43570]	tobramycin ChEBI				yes	10	µg (disc)
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #43570]	acetoin ChEBI	no
[Ref.: #43570]	hydrogen sulfide ChEBI	no
[Ref.: #43570]	indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #43570]		acetoin ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #43570]	acid phosphatase	+	3.1.3.2
[Ref.: #43570]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43570]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #43570]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43570]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43570]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43570]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43570]	beta-D-fucosidase	-	3.2.1.38
[Ref.: #43570]	beta-galactosidase	-	3.2.1.23
[Ref.: #43570]	beta-glucosidase	-	3.2.1.21
[Ref.: #43570]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43570]	catalase	+	1.11.1.6
[Ref.: #43570]	cystine arylamidase	-	3.4.11.3
[Ref.: #43570]	cytochrome oxidase	-	1.9.3.1
[Ref.: #43570]	esterase (C 4)	-
[Ref.: #43570]	esterase Lipase (C 8)	+
[Ref.: #43570]	leucine arylamidase	+	3.4.11.1
[Ref.: #43570]	lipase (C 14)	-
[Ref.: #43570]	lysine decarboxylase	-	4.1.1.18
[Ref.: #43570]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #43570]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43570]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #43570]	trypsin	+	3.4.21.4
[Ref.: #43570]	tryptophan deaminase	-	4.1.99.1
[Ref.: #43570]	urease	-	3.5.1.5
[Ref.: #43570]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43570]	Sample type/isolated from	marine sediment sample taken from the coast of Weihai
[Ref.: #43570]	Geographic location (country and/or sea, region)	Weihai
[Ref.: #43570]	Country	China
[Ref.: #43570]	Country ISO 3 Code	CHN
[Ref.: #43570]	Continent	Asia
[Ref.: #43570]	Geographic location	36.9090°/122.2540°

[Ref.: #67771]	Sample type/isolated from	From marine sediment, solar saltern off the coast of Weihai
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment
#Environmental	#Terrestrial	#Coast

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KR528477 (>99% sequence identity) for Salinimicrobium flavum subclade from Microbeatlas

Aquatic Samples	134
Soil Samples	1
Animal Samples	4
Plant Samples
Total Samples	139

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43570]	16S rRNA gene sequence	KR528477		GenBank

[Ref.: #43570]	GC-content	46.7 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67771]	GC-content	46.7 mol%

Availability in culture collections External links

[Ref.: #43570]

Culture collection no.

KCTC 42585, MCCC 1H00115

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Salinimicrobium flavum sp. nov., isolated from coastal sediment.	Zhang H, Chang YQ, Zheng WS, Chen GJ, Du ZJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.002257	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43570

Hui Zhang, Ya-Qi Chang, Wei-Shuang Zheng, Guan-Jun Chen, Zong-Jun Du: Salinimicrobium flavum sp. nov., isolated from coastal sediment. IJSEM 67: 4083 - 4088 2017 ( DOI 10.1099/ijsem.0.002257 , PubMed 28901901 )

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Salinimicrobium flavum in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF