Name: Oryzihumus soli Aerobe-19
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140787

Type strain:

Species: Oryzihumus soli

Strain Designation: Aerobe-19

Culture col. no.: KACC 18485, KCTC 39705, NBRC 111450

Strain history: <- Dong-uk Kim, SNU

NCBI tax ID(s): 1634995 (species)

Section

Oryzihumus soli Aerobe-19 is an aerobe, Gram-positive, coccus-shaped bacterium that forms circular colonies and was isolated from a soil sample collected from a lawn.

coccus-shaped
colony-forming
Gram-positive
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Intrasporangiaceae*
	Genus	*Oryzihumus*
	Species	**Oryzihumus soli**
	Full Scientific Name (LPSN)	Oryzihumus soli Kim et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43565]	Gram stain	positive

[Ref.: #43565]	Cell length	1.2-1.5 µm

[Ref.: #43565]	Cell shape	coccus-shaped

[Ref.: #43565]	Colony color	pale yellow
[Ref.: #43565]	Colony shape	circular
[Ref.: #43565]	Cultivation medium used	R2A agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43565]

Culture medium

Reasoner's 2A agar (R2A)

[Ref.: #43565]

Culture medium growth

		Temperature
[Ref.: #43565]	growth	15-30 °C
[Ref.: #43565]	optimum	30 °C
[Ref.: #67771]	growth	28 °C

[Ref.: #43565]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43565]			optimum	6
[Ref.: #43565]			growth	5-7

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43565]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43565]		NaCl		growth	0-0.5	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43565]	adipate ChEBI	-	assimilation
[Ref.: #43565]	amygdalin ChEBI	-	fermentation
[Ref.: #43565]	amygdalin ChEBI	-	oxidation
[Ref.: #43565]	cellulose ChEBI	+	hydrolysis
[Ref.: #43565]	chitin ChEBI	-	hydrolysis
[Ref.: #43565]	citrate ChEBI	-	assimilation
[Ref.: #43565]	D-glucose ChEBI	-	assimilation
[Ref.: #43565]	D-glucose ChEBI	-	fermentation
[Ref.: #43565]	D-glucose ChEBI	-	oxidation
[Ref.: #43565]	D-mannitol ChEBI	-	assimilation
[Ref.: #43565]	D-mannitol ChEBI	-	fermentation
[Ref.: #43565]	D-mannitol ChEBI	-	oxidation
[Ref.: #43565]	D-mannose ChEBI	-	assimilation
[Ref.: #43565]	D-sorbitol ChEBI	-	fermentation
[Ref.: #43565]	D-sorbitol ChEBI	-	oxidation
[Ref.: #43565]	decanoate ChEBI	-	assimilation
[Ref.: #43565]	esculin ChEBI	+	hydrolysis
[Ref.: #43565]	gelatin ChEBI	+	hydrolysis
[Ref.: #43565]	L-arabinose ChEBI	-	assimilation
[Ref.: #43565]	L-arabinose ChEBI	+/-	fermentation
[Ref.: #43565]	L-arabinose ChEBI	+/-	oxidation
[Ref.: #43565]	L-rhamnose ChEBI	-	fermentation
[Ref.: #43565]	L-rhamnose ChEBI	-	oxidation
[Ref.: #43565]	malate ChEBI	-	assimilation
[Ref.: #43565]	maltose ChEBI	-	assimilation
[Ref.: #43565]	melibiose ChEBI	-	fermentation
[Ref.: #43565]	melibiose ChEBI	-	oxidation
[Ref.: #43565]	myo-inositol ChEBI	-	fermentation
[Ref.: #43565]	myo-inositol ChEBI	-	oxidation
[Ref.: #43565]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #43565]	nitrate ChEBI	+	reduction
[Ref.: #43565]	phenylacetate ChEBI	-	assimilation
[Ref.: #43565]	potassium gluconate ChEBI	-	assimilation
[Ref.: #43565]	sodium citrate ChEBI	-	assimilation
[Ref.: #43565]	starch ChEBI	-	hydrolysis
[Ref.: #43565]	sucrose ChEBI	-	fermentation
[Ref.: #43565]	sucrose ChEBI	-	oxidation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #43565]	acetoin ChEBI	yes
[Ref.: #43565]	hydrogen sulfide ChEBI	no
[Ref.: #43565]	indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43565]	acid phosphatase	+	3.1.3.2
[Ref.: #43565]	alkaline phosphatase	-	3.1.3.1
[Ref.: #43565]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43565]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43565]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43565]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43565]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43565]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43565]	beta-galactosidase	-	3.2.1.23
[Ref.: #43565]	beta-glucuronidase	+	3.2.1.31
[Ref.: #43565]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43565]	catalase	+	1.11.1.6
[Ref.: #43565]	cystine arylamidase	-	3.4.11.3
[Ref.: #43565]	cytochrome oxidase	-	1.9.3.1
[Ref.: #43565]	esterase (C 4)	+
[Ref.: #43565]	esterase Lipase (C 8)	+
[Ref.: #43565]	leucine arylamidase	+	3.4.11.1
[Ref.: #43565]	lipase (C 14)	-
[Ref.: #43565]	lysine decarboxylase	-	4.1.1.18
[Ref.: #43565]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #43565]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43565]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #43565]	trypsin	-	3.4.21.4
[Ref.: #43565]	tryptophan deaminase	-	4.1.99.1
[Ref.: #43565]	urease	-	3.5.1.5
[Ref.: #43565]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43565]

Fatty acid	Percentage
C18:1ω7c / C18:1ω6c	73.2
C16:0	13.2
cyclo-C19:0ω8c	6.7
C16:1ω7c / C16:1ω6c	3
C18:1 2OH	2.7
C13:1at12-13	1.2

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43565]	Sample type/isolated from	a soil sample collected from a lawn
[Ref.: #43565]	Geographic location (country and/or sea, region)	Seoul National University
[Ref.: #43565]	Country	Republic of Korea
[Ref.: #43565]	Country ISO 3 Code	KOR
[Ref.: #43565]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From soil
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43565]	16S rRNA gene sequence	KP185144		GenBank

[Ref.: #43565]

GC-content

73.9 mol%

Thermal denaturation, fluorometry

Availability in culture collections External links

[Ref.: #43565]

Culture collection no.

KACC 18485, KCTC 39705, NBRC 111450

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Oryzihumus soli sp. nov., isolated from soil and emended description of the genus Oryzihumus.	Kim DU, Kim SG, Lee H, Park AY, Ka JO	Int J Syst Evol Microbiol	10.1099/ijsem.0.002231	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43565

Dong-Uk Kim, Song-Gun Kim, Hyosun Lee, A-Young Park, Jong-Ok Ka: Oryzihumus soli sp. nov., isolated from soil and emended description of the genus Oryzihumus. IJSEM 67: 3960 - 3964 2017 ( DOI 10.1099/ijsem.0.002231 , PubMed 28884678 )

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
* These data were automatically processed and therefore are not curated

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