Name: Marivibrio halodurans ZC80
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140776

Type strain:

Species: Marivibrio halodurans

Strain Designation: ZC80

Culture col. no.: CGMCC 1.15697, NBRC 112461

NCBI tax ID(s): 2039722 (species)

Section

Marivibrio halodurans ZC80 is an anaerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from rock salt samples from the Yunnan salt mine.

colony-forming
Gram-negative
motile
pleomorphic-shaped
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Kiloniellaceae*
	Genus	*Marivibrio*
	Species	**Marivibrio halodurans**
	Full Scientific Name (LPSN)	Marivibrio halodurans Chen et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43554]	Gram stain	negative
[Ref.: #43554]	Cell length	2.8-4.2 µm
[Ref.: #43554]	Cell width	0.3-0.4 µm
[Ref.: #43554]	Cell shape	pleomorphic-shaped
[Ref.: #43554]	Motility	yes
[Ref.: #43554]	Flagellum arrangement	monotrichous, polar

[Ref.: #69480]	Gram stain	negative Confidence in %99.984

[Ref.: #43554]	Colony size	2.8-4.2 mm
[Ref.: #43554]	Colony color	glistening beige
[Ref.: #43554]	Colony shape	circular
[Ref.: #43554]	Incubation period	5 days
[Ref.: #43554]	Cultivation medium used	MA agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43554]

Culture medium

Marine agar (MA)

[Ref.: #43554]

Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #43554]			growth	10-50 °C
[Ref.: #43554]			optimum	37 °C

[Ref.: #43554]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #43554]			optimum	7.5
[Ref.: #43554]			growth	6-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43554]

Oxygen tolerance

anaerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %90
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.976

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43554]		NaCl		growth	2-15	%(w/v)
[Ref.: #43554]		NaCl		optimum	5	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43554]	acetate ChEBI	+	carbon source
[Ref.: #43554]	acetate ChEBI	+	energy source
[Ref.: #43554]	benzoate ChEBI	+	carbon source
[Ref.: #43554]	benzoate ChEBI	+	energy source
[Ref.: #43554]	casein	-	hydrolysis
[Ref.: #43554]	cellobiose ChEBI	-	carbon source
[Ref.: #43554]	cellobiose ChEBI	-	energy source
[Ref.: #43554]	citrate ChEBI	+	carbon source
[Ref.: #43554]	citrate ChEBI	+	energy source
[Ref.: #43554]	D-fructose ChEBI	+	carbon source
[Ref.: #43554]	D-fructose ChEBI	+	energy source
[Ref.: #43554]	D-galactose ChEBI	+	carbon source
[Ref.: #43554]	D-galactose ChEBI	+	energy source
[Ref.: #43554]	D-glucose ChEBI	+	carbon source
[Ref.: #43554]	D-glucose ChEBI	+	energy source
[Ref.: #43554]	D-mannose ChEBI	+	carbon source
[Ref.: #43554]	D-mannose ChEBI	+	energy source
[Ref.: #43554]	D-xylose ChEBI	+	carbon source
[Ref.: #43554]	D-xylose ChEBI	+	energy source
[Ref.: #43554]	esculin ChEBI	-	hydrolysis
[Ref.: #43554]	formate ChEBI	-	carbon source
[Ref.: #43554]	formate ChEBI	-	energy source
[Ref.: #43554]	gelatin ChEBI	-	hydrolysis
[Ref.: #43554]	L-arabinose ChEBI	+	carbon source
[Ref.: #43554]	L-arabinose ChEBI	+	energy source
[Ref.: #43554]	L-glutamate ChEBI	+	carbon source
[Ref.: #43554]	L-glutamate ChEBI	+	energy source
[Ref.: #43554]	L-malate ChEBI	+	carbon source
[Ref.: #43554]	L-malate ChEBI	+	energy source
[Ref.: #43554]	L-tyrosine ChEBI	-	hydrolysis
[Ref.: #43554]	maltose ChEBI	+	carbon source
[Ref.: #43554]	maltose ChEBI	+	energy source
[Ref.: #43554]	nitrate ChEBI	+	reduction
[Ref.: #43554]	pyruvate ChEBI	+	carbon source
[Ref.: #43554]	pyruvate ChEBI	+	energy source
[Ref.: #43554]	salicin ChEBI	-	carbon source
[Ref.: #43554]	salicin ChEBI	-	energy source
[Ref.: #43554]	starch ChEBI	-	hydrolysis
[Ref.: #43554]	succinate ChEBI	+	carbon source
[Ref.: #43554]	succinate ChEBI	+	energy source
[Ref.: #43554]	sucrose ChEBI	-	carbon source
[Ref.: #43554]	sucrose ChEBI	-	energy source
[Ref.: #43554]	trehalose ChEBI	+	carbon source
[Ref.: #43554]	trehalose ChEBI	+	energy source
[Ref.: #43554]	tween 20 ChEBI	-	hydrolysis
[Ref.: #43554]	tween 40 ChEBI	-	hydrolysis
[Ref.: #43554]	tween 60 ChEBI	-	hydrolysis
[Ref.: #43554]	tween 80 ChEBI	-	hydrolysis
[Ref.: #43554]	urea ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #43554]	amikacin ChEBI				yes	30	µg (disc)
[Ref.: #43554]	amoxicillin ChEBI	yes	10	µg (disc)
[Ref.: #43554]	ampicillin ChEBI				yes	10	µg (disc)
[Ref.: #43554]	bacitracin ChEBI				yes	0.04	Unit (disc)
[Ref.: #43554]	carbenicillin ChEBI	yes	100	µg (disc)
[Ref.: #43554]	cefazolin ChEBI	yes	30	µg (disc)
[Ref.: #43554]	cefoperazone ChEBI				yes	30	µg (disc)
[Ref.: #43554]	cefotaxime ChEBI	yes	30	µg (disc)
[Ref.: #43554]	cefuroxime ChEBI	yes	30	µg (disc)
[Ref.: #43554]	chloramphenicol ChEBI	yes	30	µg (disc)
[Ref.: #43554]	ciprofloxacin ChEBI				yes	5	µg (disc)
[Ref.: #43554]	doxycycline ChEBI				yes	30	µg (disc)
[Ref.: #43554]	erythromycin ChEBI				yes	15	µg (disc)
[Ref.: #43554]	gentamicin ChEBI	yes	20	µg (disc)
[Ref.: #43554]	kanamycin ChEBI				yes	30	µg (disc)
[Ref.: #43554]	lomefloxacin ChEBI				yes	10	µg (disc)
[Ref.: #43554]	nalidixic acid ChEBI				yes	30	µg (disc)
[Ref.: #43554]	neomycin ChEBI				yes	30	µg (disc)
[Ref.: #43554]	nitrofurantoin ChEBI				yes	300	µg (disc)
[Ref.: #43554]	norfloxacin ChEBI				yes	10	µg (disc)
[Ref.: #43554]	novobiocin ChEBI				yes	30	µg (disc)
[Ref.: #43554]	penicillin g ChEBI	yes	10	µg (disc)
[Ref.: #43554]	polymyxin b ChEBI				yes	30	µg (disc)
[Ref.: #43554]	rifampicin ChEBI				yes	5	µg (disc)
[Ref.: #43554]	roxithromycin ChEBI				yes	15	µg (disc)
[Ref.: #43554]	streptomycin ChEBI				yes	10	µg (disc)
[Ref.: #43554]	tetracycline ChEBI				yes	20	µg (disc)
[Ref.: #43554]	tobramycin ChEBI				yes	10	µg (disc)
[Ref.: #43554]	vancomycin ChEBI				yes	30	µg (disc)
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite
[Ref.: #43554]		hydrogen sulfide ChEBI
[Ref.: #43554]		indole ChEBI

	Enzyme	Enzyme activity	EC number
[Ref.: #43554]	acid phosphatase	+	3.1.3.2
[Ref.: #43554]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43554]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43554]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43554]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43554]	alpha-glucosidase	-	3.2.1.20
[Ref.: #43554]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43554]	beta-galactosidase	-	3.2.1.23
[Ref.: #43554]	beta-glucosidase	-	3.2.1.21
[Ref.: #43554]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43554]	catalase	+	1.11.1.6
[Ref.: #43554]	cystine arylamidase	-	3.4.11.3
[Ref.: #43554]	esterase (C 4)	+
[Ref.: #43554]	esterase Lipase (C 8)	+
[Ref.: #43554]	leucine arylamidase	+	3.4.11.1
[Ref.: #43554]	lipase (C 14)	+
[Ref.: #43554]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #43554]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43554]	trypsin	-	3.4.21.4
[Ref.: #43554]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43554]	Sample type/isolated from	rock salt samples from the Yunnan salt mine
[Ref.: #43554]	Geographic location (country and/or sea, region)	Yunnan salt mine
[Ref.: #43554]	Country	China
[Ref.: #43554]	Country ISO 3 Code	CHN
[Ref.: #43554]	Continent	Asia
[Ref.: #43554]	Geographic location	23.8720°/100.8920°
* marker position based on {}

Isolation sources categories

#Condition	#Saline	-
#Environmental	#Terrestrial	#Geologic

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43554]	16S rRNA gene sequence	KX376721		GenBank

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Marivibrio halodurans CGMCC 1.15697	GCA_017963645	contig	GenBank	2039722 tax ID	*
[Ref.: #66792]	Marivibrio halodurans strain CGMCC 1.15697	2039722.4	wgs	PATRIC	2039722 tax ID	*

[Ref.: #43554]

GC-content

60.8 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Marivibrio halodurans strain CGMCC 1.15697 PATRIC: 2039722.4
[Ref.: #69480]	gram-positive	no	99.984	yes
[Ref.: #69480]	anaerobic	no	98.557	yes
[Ref.: #69480]	spore-forming	no	99.976	no
[Ref.: #69480]	thermophile	no	97.827	yes
[Ref.: #69480]	motile	yes	88.145	yes

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Marivibrio halodurans strain CGMCC 1.15697 PATRIC: 2039722.4
[Ref.: #69481]	spore-forming	no	90	no

Availability in culture collections External links

[Ref.: #43554]

Culture collection no.

CGMCC 1.15697, NBRC 112461

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Marivibrio halodurans gen. nov., sp. nov., a marine bacterium in the family Rhodospirillaceae isolated from underground rock salt.	Chen S, Xu Y, Zheng C, Ke LX	Int J Syst Evol Microbiol	10.1099/ijsem.0.002309	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43554

Shaoxing Chen, Yao Xu, Chen Zheng, Li-Xia Ke: Marivibrio halodurans gen. nov., sp. nov., a marine bacterium in the family Rhodospirillaceae isolated from underground rock salt. IJSEM 67: 4266 - 4271 2017 ( DOI 10.1099/ijsem.0.002309 , PubMed 28920842 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Marivibrio halodurans strain CGMCC 1.15697

Marivibrio halodurans strain CGMCC 1.15697

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