Marivibrio halodurans (CGMCC 1.15697, NBRC 112461, ZC80)

Name: Marivibrio halodurans (CGMCC 1.15697, NBRC 112461, ZC80)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140776

Type strain

Strain Designation ZC80

Culture col. no. CGMCC 1.15697 NBRC 112461 ZC80

NCBI tax ID(s) 2039722

Special Collections Literature strains

Links

Marivibrio halodurans ZC80 is an anaerobe, Gram-negative, motile prokaryote that forms circular colonies and was isolated from rock salt samples from the Yunnan salt mine.

Gram-negative motile pleomorphic-shaped colony-forming anaerobe genome sequence 16S sequence

Name and taxonomic classification

SI-ID 390965

NBRC 112461

@ref 20215

Last LPSN update 2025-12-16 10:03:41

Domain Pseudomonadati

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Rhodospirillales

Family Aestuariispiraceae

Genus Marivibrio

Species Marivibrio halodurans

Full scientific name Marivibrio halodurans Chen et al. 2017

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Flagellum arrangement	Confidence
43554	negative	2.8-4.2 µm	0.3-0.4 µm	pleomorphic-shaped	monotrichous, polar
125438	negative					97
125439	negative					97.4

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
43554	2.8-4.2 mm	glistening beige	circular	5 days	MA agar

Culture and growth conditions

Culture medium

@ref	Name	Growth
43554	Marine agar (MA)

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
43554	positive	growth	10-50
43554	positive	optimum	37	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
43554	positive	optimum	7.5
43554	positive	growth	6-10	alkaliphile

Physiology and metabolism

Oxygen tolerance

43554

Oxygen toleranceanaerobe

Spore formation

@ref	Spore formation	Confidence
125438		94.549
125439		96.6

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43554	NaCl	positive	growth	2-15 %(w/v)
43554	NaCl	positive	optimum	5 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43554	30089 ChEBI	acetate	+	carbon source
43554	30089 ChEBI	acetate	+	energy source
43554	16150 ChEBI	benzoate	+	carbon source
43554	16150 ChEBI	benzoate	+	energy source
43554		casein	-	hydrolysis
43554	17057 ChEBI	cellobiose	-	carbon source
43554	17057 ChEBI	cellobiose	-	energy source
43554	16947 ChEBI	citrate	+	carbon source
43554	16947 ChEBI	citrate	+	energy source
43554	15824 ChEBI	D-fructose	+	carbon source
43554	15824 ChEBI	D-fructose	+	energy source
43554	12936 ChEBI	D-galactose	+	carbon source
43554	12936 ChEBI	D-galactose	+	energy source
43554	17634 ChEBI	D-glucose	+	carbon source
43554	17634 ChEBI	D-glucose	+	energy source
43554	16024 ChEBI	D-mannose	+	carbon source
43554	16024 ChEBI	D-mannose	+	energy source
43554	65327 ChEBI	D-xylose	+	carbon source
43554	65327 ChEBI	D-xylose	+	energy source
43554	4853 ChEBI	esculin	-	hydrolysis
43554	15740 ChEBI	formate	-	carbon source
43554	15740 ChEBI	formate	-	energy source
43554	5291 ChEBI	gelatin	-	hydrolysis
43554	30849 ChEBI	L-arabinose	+	carbon source
43554	30849 ChEBI	L-arabinose	+	energy source
43554	29985 ChEBI	L-glutamate	+	carbon source
43554	29985 ChEBI	L-glutamate	+	energy source
43554	15589 ChEBI	L-malate	+	carbon source
43554	15589 ChEBI	L-malate	+	energy source
43554	17895 ChEBI	L-tyrosine	-	hydrolysis
43554	17306 ChEBI	maltose	+	carbon source
43554	17306 ChEBI	maltose	+	energy source
43554	17632 ChEBI	nitrate	+	reduction
43554	15361 ChEBI	pyruvate	+	carbon source
43554	15361 ChEBI	pyruvate	+	energy source
43554	17814 ChEBI	salicin	-	carbon source
43554	17814 ChEBI	salicin	-	energy source
43554	28017 ChEBI	starch	-	hydrolysis
43554	30031 ChEBI	succinate	+	carbon source
43554	30031 ChEBI	succinate	+	energy source
43554	17992 ChEBI	sucrose	-	carbon source
43554	17992 ChEBI	sucrose	-	energy source
43554	27082 ChEBI	trehalose	+	carbon source
43554	27082 ChEBI	trehalose	+	energy source
43554	53424 ChEBI	tween 20	-	hydrolysis
43554	53423 ChEBI	tween 40	-	hydrolysis
43554	53425 ChEBI	tween 60	-	hydrolysis
43554	53426 ChEBI	tween 80	-	hydrolysis
43554	16199 ChEBI	urea	-	hydrolysis

Antibiotic resistance

@ref	ChEBI	Metabolite	Resistance conc.	Sensitivity conc.
43554	2637	amikacin	30 µg (disc)
43554	2676	amoxicillin		10 µg (disc)
43554	28971	ampicillin	10 µg (disc)
43554	28669	bacitracin	0.04 Unit (disc)
43554	3393	carbenicillin		100 µg (disc)
43554	474053	cefazolin		30 µg (disc)
43554	3493	cefoperazone	30 µg (disc)
43554	204928	cefotaxime		30 µg (disc)
43554	3515	cefuroxime		30 µg (disc)
43554	17698	chloramphenicol		30 µg (disc)
43554	100241	ciprofloxacin	5 µg (disc)
43554	50845	doxycycline	30 µg (disc)
43554	48923	erythromycin	15 µg (disc)
43554	17833	gentamicin		20 µg (disc)
43554	6104	kanamycin	30 µg (disc)
43554	116278	lomefloxacin	10 µg (disc)
43554	100147	nalidixic acid	30 µg (disc)
43554	7507	neomycin	30 µg (disc)
43554	71415	nitrofurantoin	300 µg (disc)
43554	100246	norfloxacin	10 µg (disc)
43554	28368	novobiocin	30 µg (disc)
43554	18208	penicillin g		10 µg (disc)
43554	8309	polymyxin b	30 µg (disc)
43554	28077	rifampicin	5 µg (disc)
43554	48844	roxithromycin	15 µg (disc)
43554	17076	streptomycin	10 µg (disc)
43554	27902	tetracycline	20 µg (disc)
43554	28864	tobramycin	10 µg (disc)
43554	28001	vancomycin	30 µg (disc)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
43554	16136 ChEBI	hydrogen sulfide
43554	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
43554	acid phosphatase	+	3.1.3.2
43554	alkaline phosphatase	+	3.1.3.1
43554	alpha-chymotrypsin	-	3.4.21.1
43554	alpha-fucosidase	-	3.2.1.51
43554	alpha-galactosidase	-	3.2.1.22
43554	alpha-glucosidase	-	3.2.1.20
43554	alpha-mannosidase	-	3.2.1.24
43554	beta-galactosidase	-	3.2.1.23
43554	beta-glucosidase	-	3.2.1.21
43554	beta-glucuronidase	-	3.2.1.31
43554	catalase	+	1.11.1.6
43554	cystine arylamidase	-	3.4.11.3
43554	esterase (C 4)	+
43554	esterase Lipase (C 8)	+
43554	leucine arylamidase	+	3.4.11.1
43554	lipase (C 14)	+
43554	N-acetyl-beta-glucosaminidase	-	3.2.1.52
43554	naphthol-AS-BI-phosphohydrolase	+
43554	trypsin	-	3.4.21.4
43554	valine arylamidase	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Condition	#Saline	-
#Environmental	#Terrestrial	#Geologic

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
43554	rock salt samples from the Yunnan salt mine	Yunnan salt mine	China	CHN	Asia	23.872	100.892 23.872/100.892

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1796364v1 assembly for Marivibrio halodurans CGMCC 1.15697	contig	GCA_017963645	2039722.4	8001236362	2039722	72.2
124043	ASM4266294v1 assembly for Marivibrio halodurans CGMCC 1.15697	scaffold	GCA_042662945			2039722	70.64

16S sequences

@ref	Description	Accession	Database
43554	Marivibrio halodurans strain ZC80 16S ribosomal RNA gene, partial sequence	KX376721

GC content

@ref	GC-content (mol%)	Method
43554	60.8	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Marivibrio halodurans CGMCC 1.15697
NCBI: GCA_017963645

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	96.60	no
125439	motility	BacteriaNetⓘ	yes	63.00	no
125439	gram_stain	BacteriaNetⓘ	negative	97.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	66.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Marivibrio halodurans strain CGMCC 1.15697
PATRIC: 2039722.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.00	yes
125438	anaerobic	anaerobicⓘ	no	95.65	no
125438	spore-forming	spore-formingⓘ	no	94.55	no
125438	aerobic	aerobicⓘ	yes	71.50	yes
125438	thermophilic	thermophileⓘ	no	95.94	yes
125438	flagellated	motile2+ⓘ	yes	78.72	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Marivibrio halodurans gen. nov., sp. nov., a marine bacterium in the family Rhodospirillaceae isolated from underground rock salt.	Chen S, Xu Y, Zheng C, Ke LX	Int J Syst Evol Microbiol	10.1099/ijsem.0.002309	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43554	Shaoxing Chen, Yao Xu, Chen Zheng, Li-Xia Ke: Marivibrio halodurans gen. nov., sp. nov., a marine bacterium in the family Rhodospirillaceae isolated from underground rock salt. IJSEM 67: 4266 - 4271 2017 ( DOI 10.1099/ijsem.0.002309 , PubMed 28920842 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Marivibrio halodurans (CGMCC 1.15697, NBRC 112461, ZC80)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Antibiotic resistance

Metabolite production

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_017963645

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media