Name: Shewanella surugensis c959
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 14077

Type strain:

Species: Shewanella surugensis

Strain Designation: c959

Culture col. no.: DSM 17177, JCM 11835, CIP 109341, CIP 109387, KCTC 22442

Strain history: Y. Nogi c959.

NCBI tax ID(s): 212020 (species)

Section

Shewanella surugensis c959 is an aerobe, psychrophilic, Gram-negative bacterium that was isolated from deep-sea sediment.

Gram-negative
motile
rod-shaped
aerobe
psychrophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Shewanellaceae*
	Genus	*Shewanella*
	Species	**Shewanella surugensis**
	Full Scientific Name (LPSN)	Shewanella surugensis Miyazaki et al. 2006

Information on morphological and physiological properties Morphology

[Ref.: #31747]	Gram stain	negative
[Ref.: #31747]	Cell length	3.2-4 µm
[Ref.: #31747]	Cell width	0.4-0.6 µm
[Ref.: #31747]	Cell shape	rod-shaped
[Ref.: #31747]	Motility	yes

[Ref.: #31747]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6712]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #6712]

Culture medium growth

[Ref.: #6712]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6712]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #6712]	growth	10 °C
[Ref.: #31747]	growth	02-21 °C
[Ref.: #31747]	optimum	13 °C
[Ref.: #67770]	growth	13 °C

[Ref.: #6712]	Temperature range	psychrophilic
[Ref.: #31747]	Temperature range	psychrophilic
[Ref.: #67770]	Temperature range	psychrophilic

	pH	Kind of pH		pH
[Ref.: #31747]			optimum	7
[Ref.: #31747]			growth	7

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31747]

Oxygen tolerance

aerobe

[Ref.: #31747]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31747]		NaCl		growth	0-3	%
[Ref.: #31747]		NaCl		optimum	3	%

[Ref.: #31747]	Observation	aggregates in chains
[Ref.: #67770]	Observation	quinones: Q-8

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31747]	fructose ChEBI	+	carbon source
[Ref.: #31747]	glucose ChEBI	+	carbon source
[Ref.: #31747]	glycerol ChEBI	+	carbon source
[Ref.: #31747]	mannose ChEBI	+	carbon source
[Ref.: #31747]	nitrate ChEBI	+	reduction
[Ref.: #31747]	sucrose ChEBI	+	carbon source

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6712]	Sample type/isolated from	deep-sea sediment
[Ref.: #6712]	Geographic location (country and/or sea, region)	Suruga Bay
[Ref.: #6712]	Country	Japan
[Ref.: #6712]	Country ISO 3 Code	JPN
[Ref.: #6712]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Deep-sea sediment in Suruga Bay
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB094597 (>99% sequence identity) for Shewanella surugensis from Microbeatlas

Aquatic Samples	1182
Soil Samples	5
Animal Samples	38
Plant Samples	4
Total Samples	1229

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6712]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31747]	Shewanella surugensis gene for 16S rRNA, partial sequence, strain: c959	AB094597	1499	GenBank	212020 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Shewanella surugensis DSM 17177	GCA_023284005	contig	GenBank	212020 tax ID	*

[Ref.: #31747]	GC-content	40 mol%
[Ref.: #67770]	GC-content	40 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #6712]

Culture collection no.

DSM 17177, JCM 11835, CIP 109341, CIP 109387, KCTC 22442

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Shewanella surugensis sp. nov., Shewanella kaireitica sp. nov. and Shewanella abyssi sp. nov., isolated from deep-sea sediments of Suruga Bay, Japan.	Miyazaki M, Nogi Y, Usami R, Horikoshi K	Int J Syst Evol Microbiol	10.1099/ijs.0.64173-0	2006	*

References

#6712

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17177

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#31747

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28021 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#28021

IJSEM 1607 2006 ( DOI 10.1099/ijs.0.64173-0 , PubMed 16825637 )

* These data were automatically processed and therefore are not curated

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