Name: Catenovulum sediminis D2
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 140748

Type strain:

Species: Catenovulum sediminis

Strain Designation: D2

Culture col. no.: KCTC 42869, MCCC 1H00129

Strain history: <- Zongjun Du, Shandong Univ.

NCBI tax ID(s): 1740262 (species)

Special Collections

Section

When using BacDive for research please cite our paper

Catenovulum sediminis D2 is an obligate aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from marine sediment sample collected from the coast if Weihai.

colony-forming
Gram-negative
motile
rod-shaped
obligate aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Alteromonadaceae*
	Genus	*Catenovulum*
	Species	**Catenovulum sediminis**
	Full Scientific Name (LPSN)	Catenovulum sediminis Shi et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43526]	Gram stain	negative

[Ref.: #43526]	Cell length	1.5-3 µm

[Ref.: #43526]	Cell width	0.7-1.2 µm

[Ref.: #43526]	Cell shape	rod-shaped

[Ref.: #43526]	Motility	yes

[Ref.: #43526]	Flagellum arrangement	polar

[Ref.: #43526]	Colony size	0.5-1 mm
[Ref.: #43526]	Colony color	pale white
[Ref.: #43526]	Colony shape	circular
[Ref.: #43526]	Incubation period	1 day
[Ref.: #43526]	Cultivation medium used	MA agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43526]

Culture medium

Marine agar (MA)

[Ref.: #43526]

Culture medium growth

		Temperature
[Ref.: #43526]	growth	10-42 °C
[Ref.: #43526]	optimum	37 °C
[Ref.: #67771]	growth	33-37 °C

	pH	Kind of pH		pH
[Ref.: #43526]			optimum	7.5-8
[Ref.: #43526]			growth	6-9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43526]	Oxygen tolerance	obligate aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43526]		NaCl		growth	0.5-8	%(w/v)
[Ref.: #43526]		NaCl		optimum	2-3	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43526]	agar ChEBI	+	hydrolysis
[Ref.: #43526]	alginate ChEBI	+	hydrolysis
[Ref.: #43526]	carboxymethylcellulose ChEBI	-	hydrolysis
[Ref.: #43526]	D-fructose ChEBI	+	builds acid from
[Ref.: #43526]	D-fructose 6-phosphate ChEBI	+	oxidation
[Ref.: #43526]	D-ribose ChEBI	+	builds acid from
[Ref.: #43526]	D-tagatose ChEBI	+	builds acid from
[Ref.: #43526]	D-xylose ChEBI	+	builds acid from
[Ref.: #43526]	esculin ChEBI	+	builds acid from
[Ref.: #43526]	glucuronamide ChEBI	+	oxidation
[Ref.: #43526]	L-sorbose ChEBI	+	builds acid from
[Ref.: #43526]	nitrate ChEBI	-	reduction
[Ref.: #43526]	potassium 5-dehydro-D-gluconate	+	builds acid from
[Ref.: #43526]	starch ChEBI	+	hydrolysis
[Ref.: #43526]	turanose ChEBI	+	oxidation
[Ref.: #43526]	tween 20 ChEBI	-	hydrolysis
[Ref.: #43526]	tween 40 ChEBI	-	hydrolysis
[Ref.: #43526]	tween 60 ChEBI	-	hydrolysis
[Ref.: #43526]	tween 80 ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #43526]	acetylspiramycin ChEBI	yes	30	µg (disc)
[Ref.: #43526]	cefotaxime ChEBI	yes	30	µg (disc)
[Ref.: #43526]	ceftriaxone ChEBI	yes	30	µg (disc)
[Ref.: #43526]	chloramphenicol ChEBI	yes	30	µg (disc)
[Ref.: #43526]	clindamycin ChEBI				yes	30	µg (disc)
[Ref.: #43526]	erythromycin ChEBI	yes	15	µg (disc)
[Ref.: #43526]	gentamicin ChEBI				yes	10	µg (disc)
[Ref.: #43526]	lincomycin ChEBI				yes	2	µg (disc)
[Ref.: #43526]	norfloxacin ChEBI	yes	10	µg (disc)
[Ref.: #43526]	ofloxacin ChEBI	yes	5	µg (disc)
[Ref.: #43526]	penicillin g ChEBI				yes	10	µg (disc)
[Ref.: #43526]	rifampicin ChEBI	yes	5	µg (disc)
[Ref.: #43526]	streptomycin ChEBI	yes	10	µg (disc)
[Ref.: #43526]	tetracycline ChEBI				yes	30	µg (disc)
[Ref.: #43526]	tobramycin ChEBI	yes	10	µg (disc)
[Ref.: #43526]	vancomycin ChEBI				yes	30	µg (disc)
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #43526]	acetoin ChEBI	no
[Ref.: #43526]	hydrogen sulfide ChEBI	no
[Ref.: #43526]	indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #43526]		acetoin ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #43526]	acid phosphatase	+	3.1.3.2
[Ref.: #43526]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43526]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43526]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43526]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43526]	alpha-glucosidase	-	3.2.1.20
[Ref.: #43526]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43526]	beta-galactosidase	-	3.2.1.23
[Ref.: #43526]	beta-glucosidase	-	3.2.1.21
[Ref.: #43526]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43526]	catalase	-	1.11.1.6
[Ref.: #43526]	cystine arylamidase	-	3.4.11.3
[Ref.: #43526]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43526]	esterase (C 4)	-
[Ref.: #43526]	esterase Lipase (C 8)	-
[Ref.: #43526]	leucine arylamidase	+	3.4.11.1
[Ref.: #43526]	lipase (C 14)	-
[Ref.: #43526]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #43526]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43526]	trypsin	-	3.4.21.4
[Ref.: #43526]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43526]

Fatty acid	Percentage
C15:0 iso	37.8
C17:0 iso 3OH	21.5
C15:1 iso G	18.1
C15:0 iso 3OH	4.7
C16:1ω6c / C16:1ω7c	3.4
C17:1 iso ω9c / C16:0 10-methyl	2.7
C15:0 anteiso	1.5
C16:0 3OH	1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43526]	Sample type/isolated from	marine sediment sample collected from the coast if Weihai
[Ref.: #43526]	Geographic location (country and/or sea, region)	Weihai
[Ref.: #43526]	Country	China
[Ref.: #43526]	Country ISO 3 Code	CHN
[Ref.: #43526]	Continent	Asia
[Ref.: #43526]	Geographic location	37.5330°/122.0630°

[Ref.: #67771]	Sample type/isolated from	From marine desiment collected from coastal area of Weihai
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Coast
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KT932356 (>99% sequence identity) for Catenovulum sediminis subclade from Microbeatlas

Aquatic Samples	148
Soil Samples	2
Animal Samples	16
Plant Samples
Total Samples	166

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43526]	Catenovulum sediminis strain D2 16S ribosomal RNA gene, partial sequence	KT932356		GenBank ENA

[Ref.: #43526]

GC-content

40.4 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #43526]

Culture collection no.

KCTC 42869, MCCC 1H00129

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Catenovulum sediminis sp. nov., isolated from coastal sediment.	Shi MJ, Du WJ, Wang C, Chen GJ, Du ZJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.002219	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43526

Ming-Jing Shi, Wen-Jin Du, Chong Wang, Guan-Jun Chen, Zong-Jun Du: Catenovulum sediminis sp. nov., isolated from coastal sediment. IJSEM 67: 3894 - 3898 2017 ( DOI 10.1099/ijsem.0.002219 , PubMed 28895510 )

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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