Alteromonas pelagimontana (LMG 29661, MCC 3250, 5.12)

Name: Alteromonas pelagimontana (LMG 29661, MCC 3250, 5.12)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140746

Type strain

Strain Designation 5.12

Culture col. no. LMG 29661 MCC 3250 5.12

NCBI tax ID(s) 1858656

Special Collections Literature strains

Links

Alteromonas pelagimontana 5.12 is an obligate aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from sediment sample collected from a ridge wall of the Southwest Indian Ridge.

Gram-negative motile coccus-shaped colony-forming obligate aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 385900

LMG 29661

@ref 20215

Last LPSN update 2026-05-29 08:39:47

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Alteromonadales

Family Alteromonadaceae

Genus Alteromonas

Species Alteromonas pelagimontana

Full scientific name Alteromonas pelagimontana Sinha et al. 2017

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell shape	Flagellum arrangement	Confidence
43523	negative	0.7-0.8 µm	coccus-shaped	polar
125438	negative				100
125439	negative				94.877

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
43523	1-2 mm	moderately yellow	circular	2 days	qsZMA

Culture and growth conditions

Culture medium

@ref	Name	Growth
43523	qsZMA

Culture temp

@ref	Growth	Type	Temperature (°C)
43523	positive	optimum	35
43523	positive	growth	5-40

Culture pH

@ref	Ability	Type	PH	PH range
43523	positive	optimum	6
43523	positive	growth	6-10	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
43523	obligate aerobe
125439	obligate aerobe	99.466

Spore formation

@ref	Spore formation	Confidence
43523
125439		97.761

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43523	NaCl	positive	optimum	3.5 %(w/v)
43523	NaCl	positive	growth	0-10 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43523	30089 ChEBI	acetate	+	carbon source
43523	2509 ChEBI	agar	+	hydrolysis
43523	22599 ChEBI	arabinose	+	builds acid from
43523		casein	+	hydrolysis
43523	17057 ChEBI	cellobiose	+	carbon source
43523	62968 ChEBI	cellulose	-	hydrolysis
43523	16947 ChEBI	citrate	+	carbon source
43523	17108 ChEBI	D-arabinose	+	carbon source
43523	15824 ChEBI	D-fructose	+	carbon source
43523	28847 ChEBI	D-fucose	+	carbon source
43523	12936 ChEBI	D-galactose	+	builds acid from
43523	12936 ChEBI	D-galactose	+	carbon source
43523	17634 ChEBI	D-glucose	+	builds acid from
43523	17634 ChEBI	D-glucose	+	carbon source
43523	16899 ChEBI	D-mannitol	+	builds acid from
43523	16899 ChEBI	D-mannitol	+	carbon source
43523	16024 ChEBI	D-mannose	+	builds acid from
43523	16024 ChEBI	D-mannose	+	carbon source
43523	27605 ChEBI	D-psicose	+	carbon source
43523	16988 ChEBI	D-ribose	+	carbon source
43523	17924 ChEBI	D-sorbitol	-	builds acid from
43523	17924 ChEBI	D-sorbitol	+	carbon source
43523	65327 ChEBI	D-xylose	+	builds acid from
43523	65327 ChEBI	D-xylose	+	carbon source
43523	27689 ChEBI	decanoate	-	carbon source
43523	16991 ChEBI	dna	-	hydrolysis
43523	16236 ChEBI	ethanol	+	builds acid from
43523	16236 ChEBI	ethanol	+	carbon source
43523	15740 ChEBI	formate	-	carbon source
43523	33984 ChEBI	fucose	+	builds acid from
43523	29806 ChEBI	fumarate	+	carbon source
43523	5291 ChEBI	gelatin	+	hydrolysis
43523	17234 ChEBI	glucose	+	carbon source
43523	17754 ChEBI	glycerol	+	carbon source
43523	15428 ChEBI	glycine	+	carbon source
43523	16977 ChEBI	L-alanine	+	carbon source
43523	30849 ChEBI	L-arabinose	+	carbon source
43523	16467 ChEBI	L-arginine	-	carbon source
43523	29991 ChEBI	L-aspartate	-	carbon source
43523	15971 ChEBI	L-histidine	+	carbon source
43523	18019 ChEBI	L-lysine	-	carbon source
43523	16643 ChEBI	L-methionine	+	carbon source
43523	62345 ChEBI	L-rhamnose	+	carbon source
43523	17266 ChEBI	L-sorbose	+	carbon source
43523	16414 ChEBI	L-valine	+	carbon source
43523	17716 ChEBI	lactose	+	builds acid from
43523	17716 ChEBI	lactose	+	carbon source
43523	61995 ChEBI	lecithin	-	hydrolysis
43523	25097 ChEBI	lyxose	+	builds acid from
43523	25097 ChEBI	lyxose	+	carbon source
43523	15792 ChEBI	malonate	+	carbon source
43523	17306 ChEBI	maltose	+	builds acid from
43523	17306 ChEBI	maltose	+	carbon source
43523	6731 ChEBI	melezitose	+	builds acid from
43523	6731 ChEBI	melezitose	+	carbon source
43523	28053 ChEBI	melibiose	+	builds acid from
43523	28053 ChEBI	melibiose	+	carbon source
43523	17268 ChEBI	myo-inositol	+	carbon source
43523	506227 ChEBI	N-acetylglucosamine	+	carbon source
43523	17632 ChEBI	nitrate	+	reduction
43523	18394 ChEBI	palatinose	+	builds acid from
43523	18394 ChEBI	palatinose	+	carbon source
43523	17272 ChEBI	propionate	+	carbon source
43523	15361 ChEBI	pyruvate	+	carbon source
43523	16634 ChEBI	raffinose	-	builds acid from
43523	16634 ChEBI	raffinose	+	carbon source
43523	17164 ChEBI	stachyose	+	carbon source
43523	28017 ChEBI	starch	+	carbon source
43523	28017 ChEBI	starch	+	hydrolysis
43523	30031 ChEBI	succinate	+	carbon source
43523	17992 ChEBI	sucrose	-	builds acid from
43523	17992 ChEBI	sucrose	+	carbon source
43523	27082 ChEBI	trehalose	-	builds acid from
43523	27082 ChEBI	trehalose	+	carbon source
43523	53424 ChEBI	tween 20	+	carbon source
43523	53423 ChEBI	tween 40	+	carbon source
43523	53426 ChEBI	tween 80	+	carbon source
43523	18186 ChEBI	tyrosine	-	hydrolysis

Antibiotic resistance

@ref	ChEBI	Metabolite	Sensitivity conc.	Resistance conc.
43523	2676	amoxicillin	25 µg (disc)
43523	28971	ampicillin	10 µg (disc)
43523	3393	carbenicillin	100 µg (disc)
43523	204928	cefotaxime	30 µg (disc)
43523	17698	chloramphenicol	30 µg (disc)
43523	48923	erythromycin	15 µg (disc)
43523	17833	gentamicin	10 µg (disc)
43523	6104	kanamycin	30 µg (disc)
43523	100147	nalidixic acid	30 µg (disc)
43523	7507	neomycin	30 µg (disc)
43523	71415	nitrofurantoin		300 µg (disc)
43523	28368	novobiocin	30 µg (disc)
43523	18208	penicillin g	10 µg (disc)
43523	8309	polymyxin b	300 µg (disc)
43523	28077	rifampicin	30 µg (disc)
43523	17076	streptomycin	10 µg (disc)
43523	27902	tetracycline	30 µg (disc)
43523	28864	tobramycin	10 µg (disc)
43523	45924	trimethoprim	5 µg (disc)
43523	28001	vancomycin	30 µg (disc)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
43523	16136 ChEBI	hydrogen sulfide

Enzymes

@ref	Value	Activity	Ec
43523	alkaline phosphatase	+	3.1.3.1
43523	alpha-chymotrypsin	-	3.4.21.1
43523	alpha-galactosidase	-	3.2.1.22
43523	alpha-glucosidase	-	3.2.1.20
43523	beta-galactosidase	+	3.2.1.23
43523	beta-glucosidase	+	3.2.1.21
43523	catalase	+	1.11.1.6
43523	cystine arylamidase	-	3.4.11.3
43523	cytochrome oxidase	+	1.9.3.1
43523	gelatinase	+
43523	lipase (C 14)	+/-
43523	trypsin	-	3.4.21.4
43523	urease	+	3.5.1.5
43523	valine arylamidase	+

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	quinate degradation	100	2 of 2
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	glycogen metabolism	100	5 of 5
66794	Entner Doudoroff pathway	100	10 of 10
66794	methylglyoxal degradation	100	5 of 5
66794	adipate degradation	100	2 of 2
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	100	8 of 8
66794	threonine metabolism	100	10 of 10
66794	palmitate biosynthesis	100	22 of 22
66794	biotin biosynthesis	100	4 of 4
66794	starch degradation	100	10 of 10
66794	ppGpp biosynthesis	100	4 of 4
66794	butanoate fermentation	100	4 of 4
66794	formaldehyde oxidation	100	3 of 3
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	coenzyme A metabolism	100	4 of 4
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	ubiquinone biosynthesis	100	7 of 7
66794	suberin monomers biosynthesis	100	2 of 2
66794	folate polyglutamylation	100	1 of 1
66794	cellulose degradation	100	5 of 5
66794	gluconeogenesis	100	8 of 8
66794	photosynthesis	92.86	13 of 14
66794	tetrahydrofolate metabolism	92.86	13 of 14
66794	serine metabolism	88.89	8 of 9
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	lipid A biosynthesis	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	valine metabolism	88.89	8 of 9
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	isoleucine metabolism	87.5	7 of 8
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	glutamate and glutamine metabolism	85.71	24 of 28
66794	glutathione metabolism	85.71	12 of 14
66794	NAD metabolism	83.33	15 of 18
66794	glycolate and glyoxylate degradation	83.33	5 of 6
66794	pentose phosphate pathway	81.82	9 of 11
66794	peptidoglycan biosynthesis	80	12 of 15
66794	purine metabolism	79.79	75 of 94
66794	heme metabolism	78.57	11 of 14
66794	pyrimidine metabolism	77.78	35 of 45
66794	allantoin degradation	77.78	7 of 9
66794	molybdenum cofactor biosynthesis	77.78	7 of 9
66794	phenylalanine metabolism	76.92	10 of 13
66794	leucine metabolism	76.92	10 of 13
66794	ketogluconate metabolism	75	6 of 8
66794	acetate fermentation	75	3 of 4
66794	sulfopterin metabolism	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	CMP-KDO biosynthesis	75	3 of 4
66794	flavin biosynthesis	73.33	11 of 15
66794	d-xylose degradation	72.73	8 of 11
66794	alanine metabolism	72.41	21 of 29
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	reductive acetyl coenzyme A pathway	71.43	5 of 7
66794	propanol degradation	71.43	5 of 7
66794	lipid metabolism	70.97	22 of 31
66794	propionate fermentation	70	7 of 10
66794	histidine metabolism	68.97	20 of 29
66794	cysteine metabolism	66.67	12 of 18
66794	cyanate degradation	66.67	2 of 3
66794	methane metabolism	66.67	2 of 3
66794	d-mannose degradation	66.67	6 of 9
66794	octane oxidation	66.67	2 of 3
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	glycolysis	64.71	11 of 17
66794	degradation of pentoses	64.29	18 of 28
66794	tyrosine metabolism	64.29	9 of 14
66794	citric acid cycle	64.29	9 of 14
66794	proline metabolism	63.64	7 of 11
66794	vitamin B6 metabolism	63.64	7 of 11
66794	non-pathway related	63.16	24 of 38
66794	degradation of sugar alcohols	62.5	10 of 16
66794	dTDPLrhamnose biosynthesis	62.5	5 of 8
66794	methionine metabolism	61.54	16 of 26
66794	vitamin B1 metabolism	61.54	8 of 13
66794	lipoate biosynthesis	60	3 of 5
66794	metabolism of amino sugars and derivatives	60	3 of 5
66794	degradation of aromatic, nitrogen containing compounds	58.33	7 of 12
66794	isoprenoid biosynthesis	57.69	15 of 26
66794	degradation of sugar acids	56	14 of 25
66794	degradation of hexoses	55.56	10 of 18
66794	arginine metabolism	54.17	13 of 24
66794	urea cycle	53.85	7 of 13
66794	tryptophan metabolism	52.63	20 of 38
66794	pantothenate biosynthesis	50	3 of 6
66794	kanosamine biosynthesis II	50	1 of 2
66794	ethanol fermentation	50	1 of 2
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	glycine metabolism	50	5 of 10
66794	lysine metabolism	47.62	20 of 42
66794	3-phenylpropionate degradation	46.67	7 of 15
66794	polyamine pathway	43.48	10 of 23
66794	ascorbate metabolism	40.91	9 of 22
66794	D-cycloserine biosynthesis	40	2 of 5
66794	phenylacetate degradation (aerobic)	40	2 of 5
66794	glycine betaine biosynthesis	40	2 of 5
66794	gallate degradation	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	3-chlorocatechol degradation	40	2 of 5
66794	vitamin K metabolism	40	2 of 5
66794	phenylpropanoid biosynthesis	38.46	5 of 13
66794	phosphatidylethanolamine bioynthesis	38.46	5 of 13
66794	sulfate reduction	38.46	5 of 13
66794	oxidative phosphorylation	37.36	34 of 91
66794	metabolism of disaccharids	36.36	4 of 11
66794	dolichyl-diphosphooligosaccharide biosynthesis	36.36	4 of 11
66794	sulfoquinovose degradation	33.33	1 of 3
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	IAA biosynthesis	33.33	1 of 3
66794	enterobactin biosynthesis	33.33	1 of 3
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	arachidonic acid metabolism	33.33	6 of 18
66794	sphingosine metabolism	33.33	2 of 6
66794	nitrate assimilation	33.33	3 of 9
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	ginsenoside metabolism	31.25	5 of 16
66794	androgen and estrogen metabolism	31.25	5 of 16
66794	phenol degradation	30	6 of 20
66794	myo-inositol biosynthesis	30	3 of 10
66794	cyclohexanol degradation	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	carnitine metabolism	25	2 of 8
66794	catecholamine biosynthesis	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	bile acid biosynthesis, neutral pathway	23.53	4 of 17
66794	4-hydroxymandelate degradation	22.22	2 of 9

Fatty acid profile

Metadata FA analysis

@ref

43523

Fatty acid	Percentage
C16:1ω7c / C15:0 iso 2OH	28.4
C16:0	22
C10:0 3OH	17.6

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

Isolation

@ref	Sample type	Geographic location	Country	Latitude	Longitude
43523	sediment sample collected from a ridge wall of the Southwest Indian Ridge	Indian Ocean	Indian Ocean	-26.941	67.324 -26.941/67.324

Taxonmaps

69479

Global distribution of 16S sequence LT593862 (>99% sequence identity) for Alteromonas pelagimontana from Microbeatlas

Aquatic Samples	229
Soil Samples	35
Animal Samples	21
Plant Samples	6
Total Samples	291

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM249997v2 assembly for Alteromonas pelagimontana 5.12	complete	GCA_002499975	1858656.16	8122161336	1858656	93.17
66792	Alteromonas pelagimontana 5.12	complete			2791355104	1858656	73.92

16S sequences

@ref	Description	Accession	Database
43523	Alteromonas sp. 5.12 partial 16S rRNA gene, strain 5.12	LT593862

GC content

@ref	GC-content (mol%)	Method
43523	46.1	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM249997v2 assembly for Alteromonas pelagimontana 5.12
NCBI: GCA_002499975

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.47	no
125439	motility	BacteriaNetⓘ	yes	49.08	no
125439	gram_stain	BacteriaNetⓘ	negative	94.88	no
125439	spore_formation	BacteriaNetⓘ	no	97.76	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Alteromonas pelagimontana 5.12
NCBI: GCA_002499975.2

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	100.00	yes
125438	anaerobic	anaerobicⓘ	no	96.59	no
125438	aerobic	aerobicⓘ	yes	80.12	yes
125438	spore-forming	spore-formingⓘ	no	89.56	no
125438	thermophilic	thermophileⓘ	no	97.48	no
125438	flagellated	motile2+ⓘ	yes	88.14	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Complete genome sequence of Alteromonas pelagimontana 5.12(T), a marine exopolysaccharide-producing bacterium isolated from hydrothermally influenced deep-sea sediment of eastern Southwest Indian Ridge.	Sinha RK, Krishnan KP, Kurian PJ	Mar Genomics	10.1016/j.margen.2020.100804	2020
Phylogeny	Alteromonas pelagimontana sp. nov., a marine exopolysaccharide-producing bacterium isolated from the Southwest Indian Ridge.	Sinha RK, Krishnan KP, Singh A, Thomas FA, Jain A, John Kurian P	Int J Syst Evol Microbiol	10.1099/ijsem.0.002245	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43523	Rupesh Kumar Sinha, K. P. Krishnan, Archana Singh, Femi Anna Thomas, Anand Jain, P. John Kurian: Alteromonas pelagimontana sp. nov., a marine exopolysaccharide-producing bacterium isolated from the Southwest Indian Ridge. IJSEM 67: 4032 - 4038 2017 ( DOI 10.1099/ijsem.0.002245 , PubMed 28905702 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Alteromonas pelagimontana (LMG 29661, MCC 3250, 5.12)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Antibiotic resistance

Metabolite production

Enzymes

Pathway annotation

Fatty acid profile

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_002499975

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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