Name: Kushneria konosiri X49
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140736

Type strain:

Species: Kushneria konosiri

Strain Designation: X49

Culture col. no.: KACC 14623, JCM 16805

Strain history: J.-W. Bae X49.

NCBI tax ID(s): 698828 (species)

Section

Kushneria konosiri X49 is an obligate aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from Daemi-jeot, a traditional Korean salted and fermented seafood, which is made of larval gizzard shad with solar salt.

colony-forming
Gram-negative
motile
rod-shaped
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Halomonadaceae*
	Genus	*Kushneria*
	Species	**Kushneria konosiri**
	Full Scientific Name (LPSN)	Kushneria konosiri Yun et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43515]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.982

[Ref.: #43515]	Cell length	1.2-3.2 µm

[Ref.: #43515]	Cell width	0.5-1 µm

[Ref.: #43515]	Cell shape	rod-shaped

[Ref.: #43515]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %96.572

[Ref.: #43515]	Colony color	Orange
[Ref.: #43515]	Colony shape	circular
[Ref.: #43515]	Incubation period	2 days
[Ref.: #43515]	Cultivation medium used	MA agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43515]

Culture medium

Marine agar (MA)

[Ref.: #43515]

Culture medium growth

		Temperature
[Ref.: #43515]	growth	10-37 °C
[Ref.: #43515]	optimum	15-25 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #67770]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #43515]			optimum	5-7
[Ref.: #43515]			growth	4.5-8.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43515]

Oxygen tolerance

obligate aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.973

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43515]		NaCl		growth	0-26	%(w/v)
[Ref.: #43515]		NaCl		optimum	11-19	%(w/v)

[Ref.: #67770]

Observation

quinones: Q-9

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43515]	2-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #43515]	5-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #43515]	adipate ChEBI	-	assimilation
[Ref.: #43515]	amygdalin ChEBI	-	builds acid from
[Ref.: #43515]	arbutin ChEBI	-	builds acid from
[Ref.: #43515]	cellobiose ChEBI	+	builds acid from
[Ref.: #43515]	D-arabinose ChEBI	-	builds acid from
[Ref.: #43515]	D-arabitol ChEBI	+	builds acid from
[Ref.: #43515]	D-fructose ChEBI	+	builds acid from
[Ref.: #43515]	D-fucose ChEBI	+	builds acid from
[Ref.: #43515]	D-galactose ChEBI	+	builds acid from
[Ref.: #43515]	D-glucose ChEBI	-	fermentation
[Ref.: #43515]	D-glucose ChEBI	+	assimilation
[Ref.: #43515]	D-glucose ChEBI	+	builds acid from
[Ref.: #43515]	D-lyxose ChEBI	+	builds acid from
[Ref.: #43515]	D-mannitol ChEBI	-	assimilation
[Ref.: #43515]	D-mannitol ChEBI	-	builds acid from
[Ref.: #43515]	D-mannose ChEBI	+	assimilation
[Ref.: #43515]	D-mannose ChEBI	+	builds acid from
[Ref.: #43515]	D-ribose ChEBI	+	builds acid from
[Ref.: #43515]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #43515]	D-tagatose ChEBI	-	builds acid from
[Ref.: #43515]	D-xylose ChEBI	+	builds acid from
[Ref.: #43515]	decanoate ChEBI	-	assimilation
[Ref.: #43515]	erythritol ChEBI	+	builds acid from
[Ref.: #43515]	esculin ChEBI	+	builds acid from
[Ref.: #43515]	esculin ChEBI	+	hydrolysis
[Ref.: #43515]	galactitol ChEBI	-	builds acid from
[Ref.: #43515]	gelatin ChEBI	+	hydrolysis
[Ref.: #43515]	gentiobiose ChEBI	+	builds acid from
[Ref.: #43515]	gluconate ChEBI	-	builds acid from
[Ref.: #43515]	glycerol ChEBI	+	builds acid from
[Ref.: #43515]	glycogen ChEBI	-	builds acid from
[Ref.: #43515]	inulin ChEBI	-	builds acid from
[Ref.: #43515]	L-arabinose ChEBI	+	assimilation
[Ref.: #43515]	L-arabinose ChEBI	+	builds acid from
[Ref.: #43515]	L-arabitol ChEBI	+	builds acid from
[Ref.: #43515]	L-fucose ChEBI	-	builds acid from
[Ref.: #43515]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #43515]	L-sorbose ChEBI	-	builds acid from
[Ref.: #43515]	L-xylose ChEBI	-	builds acid from
[Ref.: #43515]	lactose ChEBI	+	builds acid from
[Ref.: #43515]	malate ChEBI	+	assimilation
[Ref.: #43515]	maltose ChEBI	+	assimilation
[Ref.: #43515]	maltose hydrate	+	builds acid from
[Ref.: #43515]	melezitose ChEBI	+	builds acid from
[Ref.: #43515]	melibiose ChEBI	+	builds acid from
[Ref.: #43515]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #43515]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #43515]	methyl D-glucoside ChEBI	-	builds acid from
[Ref.: #43515]	myo-inositol ChEBI	-	builds acid from
[Ref.: #43515]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #43515]	N-acetylglucosamine ChEBI	-	builds acid from
[Ref.: #43515]	nitrate ChEBI	-	reduction
[Ref.: #43515]	phenylacetate ChEBI	-	assimilation
[Ref.: #43515]	potassium gluconate ChEBI	+	assimilation
[Ref.: #43515]	raffinose ChEBI	-	builds acid from
[Ref.: #43515]	ribitol ChEBI	+	builds acid from
[Ref.: #43515]	salicin ChEBI	-	builds acid from
[Ref.: #43515]	sodium citrate ChEBI	+	assimilation
[Ref.: #43515]	starch ChEBI	-	builds acid from
[Ref.: #43515]	starch ChEBI	-	hydrolysis
[Ref.: #43515]	sucrose ChEBI	+	builds acid from
[Ref.: #43515]	trehalose ChEBI	+	builds acid from
[Ref.: #43515]	turanose ChEBI	+	builds acid from
[Ref.: #43515]	tween 20 ChEBI	+	hydrolysis
[Ref.: #43515]	tween 40 ChEBI	-	hydrolysis
[Ref.: #43515]	tween 60 ChEBI	-	hydrolysis
[Ref.: #43515]	tween 80 ChEBI	-	hydrolysis
[Ref.: #43515]	xylitol ChEBI	+	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43515]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43515]	acid phosphatase	+	3.1.3.2
[Ref.: #43515]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43515]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #43515]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43515]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43515]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43515]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43515]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43515]	beta-galactosidase	-	3.2.1.23
[Ref.: #43515]	beta-glucosidase	+	3.2.1.21
[Ref.: #43515]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43515]	catalase	+	1.11.1.6
[Ref.: #43515]	cystine arylamidase	-	3.4.11.3
[Ref.: #43515]	cytochrome oxidase	-	1.9.3.1
[Ref.: #43515]	esterase Lipase (C 8)	+
[Ref.: #43515]	leucine arylamidase	-	3.4.11.1
[Ref.: #43515]	lipase (C 14)	-
[Ref.: #43515]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #43515]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43515]	trypsin	-	3.4.21.4
[Ref.: #43515]	urease	-	3.5.1.5
[Ref.: #43515]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43515]

Fatty acid	Percentage
C18:1ω7c	32.4
C16:1ω7c / C16:1ω6c	26.2
C16:0	16.2
C14:0 2OH	5.3
11-methyl C18:1ω7c	4.3
C17:1ω6c	4.1
C14:0	3.9
C17:0	2.1
C12:0	1.3
C18:0	1.2

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43515]	Sample type/isolated from	Daemi-jeot, a traditional Korean salted and fermented seafood, which is made of larval gizzard shad (Konosirus punctatus) with solar salt
[Ref.: #43515]	Geographic location (country and/or sea, region)	A market in Goheung country
[Ref.: #43515]	Country	Republic of Korea
[Ref.: #43515]	Country ISO 3 Code	KOR
[Ref.: #43515]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Korean traditional salt-fermented seafood Daemi-jeot
* marker position based on {}

Isolation sources categories

#Condition	#Saline	-
#Engineered	#Food production	#Seafood
#Host	#Fishes	-
#Engineered	#Food production	#Fermented

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence GU198748 (>99% sequence identity) for Kushneria from Microbeatlas

Aquatic Samples	23
Soil Samples	6
Animal Samples	51
Plant Samples	6
Total Samples	86

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43515]	16S rRNA gene sequence	GU198748		GenBank

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Kushneria konosiri X49	GCA_002155145	complete	GenBank	698828 tax ID	*
[Ref.: #66792]	Kushneria sp. X49 strain X49	698828.3	complete	PATRIC	698828 tax ID	*
[Ref.: #66792]	Kushneria konosiri X49	2751185544	complete	JGI IMG/M	698828 tax ID	*

[Ref.: #43515]	GC-content	59.1 mol%
[Ref.: #67770]	GC-content	59.1 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Kushneria konosiri X49 NCBI: GCA_002155145.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Kushneria konosiri X49 NCBI: GCA_002155145.1
[Ref.: #69480]	flagellated	no	56.757	no
[Ref.: #69480]	gram-positive	no	98.185	yes
[Ref.: #69480]	anaerobic	no	98.285	yes
[Ref.: #69480]	halophile	yes	89.284	yes
[Ref.: #69480]	spore-forming	no	96.001	no
[Ref.: #69480]	glucose-util	yes	95.296	no
[Ref.: #69480]	aerobic	yes	92.721	no
[Ref.: #69480]	thermophile	no	99.534	yes
[Ref.: #69480]	motile	yes	90.219	no
[Ref.: #69480]	glucose-ferment	no	53.854	no

Availability in culture collections External links

[Ref.: #43515]

Culture collection no.

KACC 14623, JCM 16805

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Kushneria konosiri sp. nov., isolated from the Korean salt-fermented seafood Daemi-jeot.	Yun JH, Park SK, Lee JY, Jung MJ, Bae JW	Int J Syst Evol Microbiol	10.1099/ijsem.0.002170	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43515

Ji-Hyun Yun, Seong-Kyu Park, June-Young Lee, Mi-Ja Jung and Jin-Woo Bae: Kushneria konosiri sp. nov., isolated from the Korean salt-fermented seafood Daemi-jeot. IJSEM 67: 3576 - 3582 2017 ( DOI 10.1099/ijsem.0.002170 , PubMed 28866997 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Kushneria konosiri in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF