Name: Vibrio spartinae SMJ21
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140735

Type strain:

Species: Vibrio spartinae

Strain Designation: SMJ21

Culture col. no.: CECT 9026, LMG 29723

NCBI tax ID(s): 1918945 (species)

Section

Vibrio spartinae SMJ21 is a facultative anaerobe, chemoorganotroph, mesophilic bacterium that forms circular colonies and was isolated from the inside of a Spartina maritima root, growing in the estuary of the Odiel River.

colony-forming
Gram-negative
motile
rod-shaped
chemoorganotroph
facultative anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	"Vibrionales"
	Family	*Vibrionaceae*
	Genus	*Vibrio*
	Species	**Vibrio spartinae**
	Full Scientific Name (LPSN)	Vibrio spartinae Lucena et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43513]	Gram stain	negative

[Ref.: #43513]	Cell length	1-2.5 µm

[Ref.: #43513]	Cell width	0.5-0.8 µm

[Ref.: #43513]	Cell shape	rod-shaped

[Ref.: #43513]	Motility	yes

[Ref.: #43513]	Colony color	Red
[Ref.: #43513]	Colony shape	circular
[Ref.: #43513]	Cultivation medium used	Marine agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43513]

Culture medium

Marine agar (MA)

[Ref.: #43513]

Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #43513]			optimum	26 °C

[Ref.: #43513]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #43513]			optimum	7

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43513]

Oxygen tolerance

facultative anaerobe

[Ref.: #43513]

Nutrition type

chemoorganotroph

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43513]		NaCl		growth	1-10	%(w/v)
[Ref.: #43513]		NaCl		optimum	3-5	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43513]	2-oxoglutarate ChEBI	-	growth
[Ref.: #43513]	3-hydroxybutyrate ChEBI	-	growth
[Ref.: #43513]	acetate ChEBI	+	carbon source
[Ref.: #43513]	acetate ChEBI	+	energy source
[Ref.: #43513]	acetate ChEBI	+	growth
[Ref.: #43513]	alginate ChEBI	-	degradation
[Ref.: #43513]	amygdalin ChEBI	-	growth
[Ref.: #43513]	amygdalin ChEBI	+	fermentation
[Ref.: #43513]	arbutin ChEBI	+	fermentation
[Ref.: #43513]	butyrate ChEBI	-	growth
[Ref.: #43513]	casein	+	hydrolysis
[Ref.: #43513]	cellobiose ChEBI	+	carbon source
[Ref.: #43513]	cellobiose ChEBI	+	energy source
[Ref.: #43513]	cellobiose ChEBI	+	fermentation
[Ref.: #43513]	cellobiose ChEBI	+	growth
[Ref.: #43513]	citrate ChEBI	+	carbon source
[Ref.: #43513]	citrate ChEBI	+	energy source
[Ref.: #43513]	citrate ChEBI	+	growth
[Ref.: #43513]	D-fructose ChEBI	+	carbon source
[Ref.: #43513]	D-fructose ChEBI	+	energy source
[Ref.: #43513]	D-fructose ChEBI	+	fermentation
[Ref.: #43513]	D-fructose ChEBI	+	growth
[Ref.: #43513]	D-galactose ChEBI	+	carbon source
[Ref.: #43513]	D-galactose ChEBI	+	energy source
[Ref.: #43513]	D-galactose ChEBI	+	fermentation
[Ref.: #43513]	D-galactose ChEBI	+	growth
[Ref.: #43513]	D-galacturonic acid ChEBI	+/-	growth
[Ref.: #43513]	D-gluconate ChEBI	-	growth
[Ref.: #43513]	D-glucose ChEBI	+	carbon source
[Ref.: #43513]	D-glucose ChEBI	+	energy source
[Ref.: #43513]	D-glucose ChEBI	+	fermentation
[Ref.: #43513]	D-glucose ChEBI	+	growth
[Ref.: #43513]	D-mannitol ChEBI	+	carbon source
[Ref.: #43513]	D-mannitol ChEBI	+	energy source
[Ref.: #43513]	D-mannitol ChEBI	+	fermentation
[Ref.: #43513]	D-mannitol ChEBI	+	growth
[Ref.: #43513]	D-mannose ChEBI	+	carbon source
[Ref.: #43513]	D-mannose ChEBI	+	energy source
[Ref.: #43513]	D-mannose ChEBI	+	fermentation
[Ref.: #43513]	D-mannose ChEBI	+	growth
[Ref.: #43513]	D-ribose ChEBI	+	carbon source
[Ref.: #43513]	D-ribose ChEBI	+	energy source
[Ref.: #43513]	D-ribose ChEBI	+	fermentation
[Ref.: #43513]	D-ribose ChEBI	+	growth
[Ref.: #43513]	D-saccharate ChEBI	-	growth
[Ref.: #43513]	D-sorbitol ChEBI	+	carbon source
[Ref.: #43513]	D-sorbitol ChEBI	+	energy source
[Ref.: #43513]	D-sorbitol ChEBI	+	fermentation
[Ref.: #43513]	D-sorbitol ChEBI	+	growth
[Ref.: #43513]	D-trehalose ChEBI	+	carbon source
[Ref.: #43513]	D-trehalose ChEBI	+	energy source
[Ref.: #43513]	D-trehalose ChEBI	+	growth
[Ref.: #43513]	D-xylose ChEBI	+	carbon source
[Ref.: #43513]	D-xylose ChEBI	+	energy source
[Ref.: #43513]	D-xylose ChEBI	+	fermentation
[Ref.: #43513]	D-xylose ChEBI	+	growth
[Ref.: #43513]	dna ChEBI	+	hydrolysis
[Ref.: #43513]	esculin ChEBI	+	fermentation
[Ref.: #43513]	fumarate ChEBI	+	carbon source
[Ref.: #43513]	fumarate ChEBI	+	energy source
[Ref.: #43513]	fumarate ChEBI	+	growth
[Ref.: #43513]	gamma-aminobutyric acid ChEBI	+	carbon source
[Ref.: #43513]	gamma-aminobutyric acid ChEBI	+	energy source
[Ref.: #43513]	gamma-aminobutyric acid ChEBI	+	growth
[Ref.: #43513]	gelatin ChEBI	+	hydrolysis
[Ref.: #43513]	gentiobiose ChEBI	+	fermentation
[Ref.: #43513]	glucose ChEBI	+	fermentation
[Ref.: #43513]	glucuronate ChEBI	+/-	growth
[Ref.: #43513]	glycerol ChEBI	+	carbon source
[Ref.: #43513]	glycerol ChEBI	+	energy source
[Ref.: #43513]	glycerol ChEBI	+	fermentation
[Ref.: #43513]	glycerol ChEBI	+	growth
[Ref.: #43513]	glycine ChEBI	-	growth
[Ref.: #43513]	glycogen ChEBI	+	fermentation
[Ref.: #43513]	L-alanine ChEBI	+	carbon source
[Ref.: #43513]	L-alanine ChEBI	+	energy source
[Ref.: #43513]	L-alanine ChEBI	+	growth
[Ref.: #43513]	L-arabinose ChEBI	+	carbon source
[Ref.: #43513]	L-arabinose ChEBI	+	energy source
[Ref.: #43513]	L-arabinose ChEBI	+	fermentation
[Ref.: #43513]	L-arabinose ChEBI	+	growth
[Ref.: #43513]	L-arginine ChEBI	-	growth
[Ref.: #43513]	L-aspartate ChEBI	+	carbon source
[Ref.: #43513]	L-aspartate ChEBI	+	energy source
[Ref.: #43513]	L-aspartate ChEBI	+	growth
[Ref.: #43513]	L-citrulline ChEBI	-	growth
[Ref.: #43513]	L-glutamate ChEBI	+	carbon source
[Ref.: #43513]	L-glutamate ChEBI	+	energy source
[Ref.: #43513]	L-glutamate ChEBI	+	growth
[Ref.: #43513]	L-histidine ChEBI	+/-	growth
[Ref.: #43513]	L-leucine ChEBI	-	growth
[Ref.: #43513]	L-lysine ChEBI	-	growth
[Ref.: #43513]	L-ornithine ChEBI	-	growth
[Ref.: #43513]	L-serine ChEBI	-	growth
[Ref.: #43513]	L-threonine ChEBI	+/-	growth
[Ref.: #43513]	L-tyrosine ChEBI	-	growth
[Ref.: #43513]	lactate ChEBI	+	carbon source
[Ref.: #43513]	lactate ChEBI	+	energy source
[Ref.: #43513]	lactate ChEBI	+	growth
[Ref.: #43513]	lactose ChEBI	-	growth
[Ref.: #43513]	lactose ChEBI	+	fermentation
[Ref.: #43513]	malate ChEBI	+	carbon source
[Ref.: #43513]	malate ChEBI	+	energy source
[Ref.: #43513]	malate ChEBI	+	growth
[Ref.: #43513]	maltose ChEBI	+	carbon source
[Ref.: #43513]	maltose ChEBI	+	energy source
[Ref.: #43513]	maltose ChEBI	+	fermentation
[Ref.: #43513]	maltose ChEBI	+	growth
[Ref.: #43513]	melibiose ChEBI	+	carbon source
[Ref.: #43513]	melibiose ChEBI	+	energy source
[Ref.: #43513]	melibiose ChEBI	+	fermentation
[Ref.: #43513]	melibiose ChEBI	+	growth
[Ref.: #43513]	methyl alpha-D-glucopyranoside ChEBI	+	fermentation
[Ref.: #43513]	myo-inositol ChEBI	-	growth
[Ref.: #43513]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #43513]	N-acetylglucosamine ChEBI	+	energy source
[Ref.: #43513]	N-acetylglucosamine ChEBI	+	fermentation
[Ref.: #43513]	N-acetylglucosamine ChEBI	+	growth
[Ref.: #43513]	nitrate ChEBI	+/-	reduction
[Ref.: #43513]	propionate ChEBI	+/-	growth
[Ref.: #43513]	putrescine ChEBI	-	growth
[Ref.: #43513]	pyruvate ChEBI	+	carbon source
[Ref.: #43513]	pyruvate ChEBI	+	energy source
[Ref.: #43513]	pyruvate ChEBI	+	growth
[Ref.: #43513]	salicin ChEBI	+	carbon source
[Ref.: #43513]	salicin ChEBI	+	energy source
[Ref.: #43513]	salicin ChEBI	+	fermentation
[Ref.: #43513]	salicin ChEBI	+	growth
[Ref.: #43513]	sarcosine ChEBI	+/-	growth
[Ref.: #43513]	starch ChEBI	+	fermentation
[Ref.: #43513]	starch ChEBI	+	hydrolysis
[Ref.: #43513]	succinate ChEBI	+	carbon source
[Ref.: #43513]	succinate ChEBI	+	energy source
[Ref.: #43513]	succinate ChEBI	+	growth
[Ref.: #43513]	sucrose ChEBI	+	carbon source
[Ref.: #43513]	sucrose ChEBI	+	energy source
[Ref.: #43513]	sucrose ChEBI	+	fermentation
[Ref.: #43513]	sucrose ChEBI	+	growth
[Ref.: #43513]	trans-aconitate ChEBI	+	carbon source
[Ref.: #43513]	trans-aconitate ChEBI	+	energy source
[Ref.: #43513]	trans-aconitate ChEBI	+	growth
[Ref.: #43513]	trehalose ChEBI	+	fermentation
[Ref.: #43513]	tryptophan ChEBI	+	energy source
[Ref.: #43513]	turanose ChEBI	+	fermentation
[Ref.: #43513]	tween 80 ChEBI	+	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43513]		acetoin ChEBI	yes
[Ref.: #43513]		indole ChEBI	yes

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #43513]		acetoin ChEBI	+
[Ref.: #43513]		indole ChEBI		+

	Enzyme	Enzyme activity	EC number
[Ref.: #43513]	alkaline phosphatase	+/-	3.1.3.1
[Ref.: #43513]	alpha-glucosidase	+/-	3.2.1.20
[Ref.: #43513]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43513]	beta-glucosidase	+	3.2.1.21
[Ref.: #43513]	catalase	+	1.11.1.6
[Ref.: #43513]	cytochrome oxidase	-	1.9.3.1
[Ref.: #43513]	leucine arylamidase	+	3.4.11.1
[Ref.: #43513]	lipase (C 14)	+
[Ref.: #43513]	lysine decarboxylase	-	4.1.1.18
[Ref.: #43513]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #43513]	tryptophan deaminase	+	4.1.99.1
[Ref.: #43513]	urease	-	3.5.1.5
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43513]	Sample type/isolated from	the inside of a Spartina maritima root, growing in the estuary of the Odiel River
[Ref.: #43513]	Geographic location (country and/or sea, region)	Huelva
[Ref.: #43513]	Country	Spain
[Ref.: #43513]	Country ISO 3 Code	ESP
[Ref.: #43513]	Continent	Europe
[Ref.: #43513]	Geographic location	37.1760°/-6.9330°
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Estuary
#Environmental	#Aquatic	#River (Creek)
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KX583607 (>99% sequence identity) for Vibrio spartinae from Microbeatlas

Aquatic Samples	8
Soil Samples
Animal Samples	2
Plant Samples
Total Samples	10

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43513]	16S rRNA gene sequence	KX583607		GenBank

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Vibrio spartinae CECT 9026T	GCA_900149295	contig	GenBank	1918945 tax ID	*
[Ref.: #66792]	Vibrio sp. CECT 9026	1918945.3	wgs	PATRIC	1918945 tax ID	*
[Ref.: #66792]	Vibrio spartinae CECT 9026	2791355470	draft	JGI IMG/M	1918945 tax ID	*
[Ref.: #66792]	Vibrio spartinae CECT 9026	GCA_024347135	complete	GenBank	1918945 tax ID	*

[Ref.: #43513]

GC-content

45.3 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Vibrio spartinae CECT 9026 NCBI: GCA_024347135.1
[Ref.: #69480]	flagellated	yes	75.9	no
[Ref.: #69480]	gram-positive	no	99.035	yes
[Ref.: #69480]	anaerobic	no	95.659	yes
[Ref.: #69480]	aerobic	no	70.669	yes
[Ref.: #69480]	halophile	yes	65.761	no
[Ref.: #69480]	spore-forming	no	94.194	no
[Ref.: #69480]	motile	yes	90.889	yes
[Ref.: #69480]	glucose-ferment	yes	88.095	yes
[Ref.: #69480]	thermophile	no	98.625	yes
[Ref.: #69480]	glucose-util	yes	95.526	yes

Availability in culture collections External links

[Ref.: #43513]

Culture collection no.

CECT 9026, LMG 29723

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Vibrio palustris sp. nov. and Vibrio spartinae sp. nov., two novel members of the Gazogenes clade, isolated from salt-marsh plants (Arthrocnemum macrostachyum and Spartina maritima).	Lucena T, Arahal DR, Ruvira MA, Navarro-Torre S, Mesa J, Pajuelo E, Rodriguez-Llorente ID, Rodrigo-Torres L, Pinar MJ, Pujalte MJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.002155	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43513

Teresa Lucena, David R. Arahal, María A. Ruvira, Salvadora Navarro-Torre, Jennifer Mesa, Eloísa Pajuelo, Ignacio D. Rodriguez-Llorente, Lidia Rodrigo-Torres, María J. Piñar, María J. Pujalte: Vibrio palustris sp. nov. and Vibrio spartinae sp. nov., two novel members of the Gazogenes clade, isolated from salt-marsh plants (Arthrocnemum macrostachyum and Spartina maritima). IJSEM 67: 3506 - 3512 2017 ( DOI 10.1099/ijsem.0.002155 , PubMed 28857026 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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Vibrio spartinae CECT 9026

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