Rhodobacter lacus (KCTC 15478, LMG 28758, JA826)

Name: Rhodobacter lacus (KCTC 15478, LMG 28758, JA826)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140726

Type strain

Strain Designation JA826

Culture col. no. KCTC 15478 LMG 28758 JA826

NCBI tax ID(s) 1641972

Special Collections KCTC Literature strains

History KCTC <- Ch Sasikala, JNT Univ, India

Links

Rhodobacter lacus JA826 is an anaerobe, Gram-negative, motile bacterium that was isolated from water sample of an industrially polluted fresh water lake.

Gram-negative motile rod-shaped anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 366616

LMG 28758,KCTC 15478

@ref 20215

Last LPSN update 2026-05-29 08:39:47

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Rhodobacterales

Family Paracoccaceae

Genus Rhodobacter

Species Rhodobacter lacus

Full scientific name Rhodobacter lacus Suresh et al. 2017

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Flagellum arrangement	Confidence
43503	negative	2.0-2.2 µm	0.8-1 µm	rod-shaped	polar
67771				rod-shaped	monotrichous, polar
67771	negative
125439	negative					90.594

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
43503	positive	growth	25-35
43503	positive	optimum	30
67771	positive	growth	30

Culture pH

@ref	Ability	Type	PH
43503	positive	optimum	7
43503	positive	growth	6-8

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
67771	anaerobe
125439	aerobe	91.851

Spore formation

@ref	Spore formation	Confidence
125439		92.937

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43503	NaCl	positive	growth	0-1 %(w/v)
43503	NaCl	positive	optimum	0.5 %(w/v)

Observation

67771

Observationquinones: Q-10

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43503	30089 ChEBI	acetate	-	carbon source
43503	30089 ChEBI	acetate	-	electron donor
43503	31206 ChEBI	ammonium chloride	+	nitrogen source
43503	35391 ChEBI	aspartate	+	carbon source
43503	35391 ChEBI	aspartate	+	electron donor
43503	35391 ChEBI	aspartate	+	nitrogen source
43503	28179 ChEBI	benzamide	-	assimilation
43503	16150 ChEBI	benzoate	-	assimilation
43503	28885 ChEBI	butanol	-	assimilation
43503	17968 ChEBI	butyrate	-	assimilation
43503	16947 ChEBI	citrate	-	assimilation
43503	16947 ChEBI	citrate	-	carbon source
43503	16947 ChEBI	citrate	-	electron donor
43503	35899 ChEBI	crotonate	-	assimilation
43503	27689 ChEBI	decanoate	-	assimilation
43503	18276 ChEBI	dihydrogen	-	carbon source
43503	18276 ChEBI	dihydrogen	-	electron donor
43503	17997 ChEBI	dinitrogen	+	nitrogen source
43503	16236 ChEBI	ethanol	-	assimilation
43503	28757 ChEBI	fructose	+	carbon source
43503	28757 ChEBI	fructose	+	electron donor
43503	29806 ChEBI	fumarate	+	carbon source
43503	29806 ChEBI	fumarate	+	electron donor
43503	17234 ChEBI	glucose	+	carbon source
43503	17234 ChEBI	glucose	+	electron donor
43503	29987 ChEBI	glutamate	-	carbon source
43503	29987 ChEBI	glutamate	-	electron donor
43503	29987 ChEBI	glutamate	+	nitrogen source
43503	28300 ChEBI	glutamine	+	nitrogen source
43503	17754 ChEBI	glycerol	-	assimilation
43503	17754 ChEBI	glycerol	-	carbon source
43503	17754 ChEBI	glycerol	-	electron donor
43503	29805 ChEBI	glycolate	-	assimilation
43503	29864 ChEBI	mannitol	-	assimilation
43503	29864 ChEBI	mannitol	-	carbon source
43503	29864 ChEBI	mannitol	-	electron donor
43503	17790 ChEBI	methanol	-	assimilation
43503	28831 ChEBI	propanol	-	assimilation
43503	30031 ChEBI	succinate	-	carbon source
43503	30031 ChEBI	succinate	-	electron donor
43503	17992 ChEBI	sucrose	+	carbon source
43503	17992 ChEBI	sucrose	+	electron donor
43503	16189 ChEBI	sulfate	+	assimilation
43503	15138 ChEBI	sulfide	-	carbon source
43503	15138 ChEBI	sulfide	-	electron donor
43503	15138 ChEBI	sulfide	+	assimilation
43503	30929 ChEBI	tartrate	-	assimilation
43503	47869 ChEBI	thioglycolate	-	assimilation
43503	16094 ChEBI	thiosulfate	-	carbon source
43503	16094 ChEBI	thiosulfate	-	electron donor
43503	16094 ChEBI	thiosulfate	+	assimilation
43503	16199 ChEBI	urea	+	nitrogen source
43503	31011 ChEBI	valerate	-	assimilation

Enzymes

@ref	Value	Activity	Ec
43503	cytochrome oxidase	-	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Contamination	-
#Environmental	#Aquatic	#Freshwater
#Environmental	#Aquatic	#Lake (large)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
43503	water sample of an industrially polluted fresh water lake	Hubbali, Karnataka	India	IND	Asia	15.433	75.333 15.433/75.333
67771	From sediment, industrially polluted fresh water lake	Unkal lake, Hubli, Karnataka	India	IND	Asia

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM4268306v1 assembly for Rhodobacter lacus KCTC 15478	scaffold	GCA_042683065	1641972	67.5

16S sequences

@ref	Description	Accession	Database
43503	Rhodobacter sp. JA826 partial 16S rRNA gene, strain JA826, isolate UL2F	LN835251

GC content

@ref	GC-content (mol%)	Method
43503	65.5	high performance liquid chromatography (HPLC)
67771	65.5

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM4268306v1 assembly for Rhodobacter lacus KCTC 15478
NCBI: GCA_042683065

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	91.85	no
125439	gram_stain	BacteriaNetⓘ	negative	90.59	no
125439	motility	BacteriaNetⓘ	yes	45.28	no
125439	spore_formation	BacteriaNetⓘ	no	92.94	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Description of Rhodobacter azollae sp. nov. and Rhodobacter lacus sp. nov.	Suresh G, Sailaja B, Ashif A, Dave BP, Sasikala C, Ramana CV	Int J Syst Evol Microbiol	10.1099/ijsem.0.002107	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43503	Suresh G, Sailaja B, Ashif A, Bharti P. Dave, Sasikala Ch., Ramana Ch.V.: Description of Rhodobacter azollae sp. nov. and Rhodobacter lacus sp. nov.. IJSEM 67: 3289 - 3295 2017 ( DOI 10.1099/ijsem.0.002107 , PubMed 28829020 )
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Rhodobacter lacus (KCTC 15478, LMG 28758, JA826)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_042683065

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media