Name: Swionibacillus sediminis BW11-2
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140718

Type strain:

Species: Swionibacillus sediminis

Strain Designation: BW11-2

Culture col. no.: CICC 24196, JCM 31924

Strain history: J. Ni; Sch. of Life Sci, Shandong Univ., China; BW11-2.

NCBI tax ID(s): 1960324 (species)

Section

Swionibacillus sediminis BW11-2 is an obligate aerobe, spore-forming, Gram-negative bacterium that forms circular colonies and was isolated from deep-sea sediment sample of the south-west Indian Ocean at 2731m depth.

colony-forming
Gram-negative
rod-shaped
spore-forming
obligate aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Swionibacillus*
	Species	**Swionibacillus sediminis**
	Full Scientific Name (LPSN)	Swionibacillus sediminis Li et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43492]	Gram stain	negative

[Ref.: #43492]	Cell length	1.8-2.0 µm

[Ref.: #43492]	Cell width	0.3-0.5 µm

[Ref.: #43492]	Cell shape	rod-shaped

[Ref.: #43492]	Motility	no

[Ref.: #43492]	Colony size	0.75-1 mm
[Ref.: #43492]	Colony color	colourless, opaque
[Ref.: #43492]	Colony shape	circular
[Ref.: #43492]	Incubation period	3 days
[Ref.: #43492]	Cultivation medium used	marine 2216 agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43492]

Culture medium

marine 2216 agar

[Ref.: #43492]

Culture medium growth

[Ref.: #43492]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #43492]	growth	15-45 °C
[Ref.: #43492]	optimum	30 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #43492]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43492]			optimum	7
[Ref.: #43492]			growth	5-9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43492]

Oxygen tolerance

obligate aerobe

[Ref.: #43492]	Spore description	ellipsoidal spores are located in the subterminal are with swollen sporangia
[Ref.: #43492]	Type of spore	endospore
[Ref.: #43492]	Ability of spore formation	yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43492]		NaCl		growth	0.5-10	%(w/v)
[Ref.: #43492]		NaCl		optimum	3	%(w/v)

[Ref.: #43492]	Observation	Requires B12 for satisfactory growth
[Ref.: #67770]	Observation	quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43492]	2-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #43492]	5-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #43492]	amygdalin ChEBI	+	builds acid from
[Ref.: #43492]	arbutin ChEBI	+	builds acid from
[Ref.: #43492]	cellobiose ChEBI	+	builds acid from
[Ref.: #43492]	D-arabinose ChEBI	-	builds acid from
[Ref.: #43492]	D-arabitol ChEBI	-	builds acid from
[Ref.: #43492]	D-fructose ChEBI	+	builds acid from
[Ref.: #43492]	D-glucose ChEBI	+	builds acid from
[Ref.: #43492]	D-lyxose ChEBI	-	builds acid from
[Ref.: #43492]	D-mannose ChEBI	+	builds acid from
[Ref.: #43492]	D-tagatose ChEBI	+	builds acid from
[Ref.: #43492]	D-xylose ChEBI	-	builds acid from
[Ref.: #43492]	erythritol ChEBI	-	builds acid from
[Ref.: #43492]	esculin ChEBI	+	builds acid from
[Ref.: #43492]	galactitol ChEBI	-	builds acid from
[Ref.: #43492]	galactose ChEBI	+/-	builds acid from
[Ref.: #43492]	gentiobiose ChEBI	+/-	builds acid from
[Ref.: #43492]	gluconate ChEBI	-	builds acid from
[Ref.: #43492]	glycerol ChEBI	+/-	builds acid from
[Ref.: #43492]	glycogen ChEBI	-	builds acid from
[Ref.: #43492]	inulin ChEBI	-	builds acid from
[Ref.: #43492]	L-arabinose ChEBI	+/-	builds acid from
[Ref.: #43492]	L-arabitol ChEBI	-	builds acid from
[Ref.: #43492]	L-fucose ChEBI	-	builds acid from
[Ref.: #43492]	L-sorbose ChEBI	-	builds acid from
[Ref.: #43492]	L-xylose ChEBI	-	builds acid from
[Ref.: #43492]	lactose ChEBI	-	builds acid from
[Ref.: #43492]	maltose ChEBI	-	builds acid from
[Ref.: #43492]	mannitol ChEBI	-	builds acid from
[Ref.: #43492]	mannitol ChEBI	+	builds acid from
[Ref.: #43492]	melezitose ChEBI	-	builds acid from
[Ref.: #43492]	melibiose ChEBI	-	builds acid from
[Ref.: #43492]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #43492]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #43492]	methyl D-glucoside ChEBI	-	builds acid from
[Ref.: #43492]	myo-inositol ChEBI	-	builds acid from
[Ref.: #43492]	N-acetylglucosamine ChEBI	+	builds acid from
[Ref.: #43492]	nitrate ChEBI	+	reduction
[Ref.: #43492]	raffinose ChEBI	-	builds acid from
[Ref.: #43492]	rhamnose ChEBI	-	builds acid from
[Ref.: #43492]	ribitol ChEBI	-	builds acid from
[Ref.: #43492]	ribose ChEBI	+/-	builds acid from
[Ref.: #43492]	salicin ChEBI	+	builds acid from
[Ref.: #43492]	skimmed milk	+	hydrolysis
[Ref.: #43492]	sorbitol ChEBI	-	builds acid from
[Ref.: #43492]	starch ChEBI	-	builds acid from
[Ref.: #43492]	starch ChEBI	-	hydrolysis
[Ref.: #43492]	sucrose ChEBI	+	builds acid from
[Ref.: #43492]	trehalose ChEBI	+	builds acid from
[Ref.: #43492]	turanose ChEBI	-	builds acid from
[Ref.: #43492]	tween 20 ChEBI	-	hydrolysis
[Ref.: #43492]	tween 40 ChEBI	-	hydrolysis
[Ref.: #43492]	tween 60 ChEBI	-	hydrolysis
[Ref.: #43492]	tween 80 ChEBI	-	hydrolysis
[Ref.: #43492]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43492]		acetoin ChEBI	yes

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #43492]		acetoin ChEBI	+

	Enzyme	Enzyme activity	EC number
[Ref.: #43492]	acid phosphatase	+	3.1.3.2
[Ref.: #43492]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43492]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43492]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43492]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43492]	alpha-glucosidase	-	3.2.1.20
[Ref.: #43492]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43492]	beta-galactosidase	-	3.2.1.23
[Ref.: #43492]	beta-glucosidase	+	3.2.1.21
[Ref.: #43492]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43492]	catalase	+	1.11.1.6
[Ref.: #43492]	cystine arylamidase	-	3.4.11.3
[Ref.: #43492]	cytochrome oxidase	-	1.9.3.1
[Ref.: #43492]	esterase (C 4)	+
[Ref.: #43492]	esterase Lipase (C 8)	+
[Ref.: #43492]	leucine arylamidase	+/-	3.4.11.1
[Ref.: #43492]	lipase (C 14)	-
[Ref.: #43492]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #43492]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43492]	trypsin	+	3.4.21.4
[Ref.: #43492]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43492]

Fatty acid	Percentage
C18:1ω7c	43.26
11-methyl C18:1ω7c	25.44
C16:1ω7c / C16:1ω6c	12.31
C16:0	8.01
C19:0 cyclo ω8c	2.71
C18:1 2OH	2.7
C14:03OH / C16:1isoI	2.69
C20:1ω7c	1.52
C18:0	1.36

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43492]	Sample type/isolated from	deep-sea sediment sample of the south-west Indian Ocean at 2731m depth
[Ref.: #43492]	Geographic location (country and/or sea, region)	Indian Ocean

[Ref.: #67770]	Sample type/isolated from	Marine sediment of the south-west Indian Ocean
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43492]	16S rRNA gene sequence	KY635836		GenBank

[Ref.: #43492]	GC-content	43.4 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	43.3 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #43492]

Culture collection no.

CICC 24196, JCM 31924

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Swionibacillus sediminis gen. nov., sp. nov., a member of the family Bacillaceae isolated from ocean sediment.	Li J, Liu J, Shen Y, Ni J	Int J Syst Evol Microbiol	10.1099/ijsem.0.002133	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43492

Jingjing Li, Junfeng Liu, Yulong Shen, Jinfeng Ni: Swionibacillus sediminis gen. nov., sp. nov., a member of the family Bacillaceae isolated from ocean sediment. IJSEM 67: 3603 - 3609 2017 ( DOI 10.1099/ijsem.0.002133 , PubMed 28857029 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
* These data were automatically processed and therefore are not curated

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