Vagococcus martis (KCTC 21069, JCM 31178, D7T301)

Name: Vagococcus martis (KCTC 21069, JCM 31178, D7T301)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140716

Type strain

Strain Designation D7T301

Culture col. no. KCTC 21069 JCM 31178 D7T301

NCBI tax ID(s) 1768210

Special Collections JCM KCTC Literature strains

Links

Vagococcus martis D7T301 is a facultative aerobe, Gram-positive, coccus-shaped prokaryote that forms irregular colonies and was isolated from the small intestine tract of a marten, Martes flavigula, that was killed on the road.

Gram-positive coccus-shaped colony-forming facultative aerobe genome sequence 16S sequence

Name and taxonomic classification

SI-ID 411812

LMG 30667,KCTC 21069,JCM 31178,CCUG 73525

@ref 20215

Last LPSN update 2025-12-16 10:03:40

Domain Bacillati

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Enterococcaceae

Genus Vagococcus

Species Vagococcus martis

Full scientific name Vagococcus martis Tak et al. 2017

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
43491	positive	coccus-shaped
67771		coccus-shaped
67771	positive
125438			91
125438	positive		91.948

Colony morphology

@ref	Colony color	Colony shape	Medium used
43491	creamy	irregular	TSYA

Culture and growth conditions

Culture medium

@ref	Name	Growth
43491	TSYA

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
43491	positive	growth	15-37
43491	positive	optimum	37	mesophilic
67770	positive	growth	37	mesophilic
67771	positive	growth	37	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
43491	positive	optimum	7
43491	positive	growth	6-9	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
43491	facultative aerobe
67771	facultative anaerobe

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43491	NaCl	positive	growth	0-5.5 %(w/v)
43491	NaCl	positive	optimum	0.5 %(w/v)

Observation

@ref	Observation
67770	quinones: MK-7
67771	quinones: MK-7

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43491	17925 ChEBI	alpha-D-glucose	+	respiration
43491	17057 ChEBI	cellobiose	+	builds acid from
43491	15824 ChEBI	D-fructose	+	builds acid from
43491	15824 ChEBI	D-fructose	+	respiration
43491	12936 ChEBI	D-galactose	+	builds acid from
43491	17634 ChEBI	D-glucose	+	builds acid from
43491	62318 ChEBI	D-lyxose	+	builds acid from
43491	16024 ChEBI	D-mannose	+	builds acid from
43491	16024 ChEBI	D-mannose	+	respiration
43491	27605 ChEBI	D-psicose	+	respiration
43491	16988 ChEBI	D-ribose	+	builds acid from
43491	16988 ChEBI	D-ribose	+	respiration
43491	16443 ChEBI	D-tagatose	+	builds acid from
43491		esculin ferric citrate	+	builds acid from
43491	17234 ChEBI	glucose	+	assimilation
43491	17754 ChEBI	glycerol	+	builds acid from
43491	17754 ChEBI	glycerol	+	respiration
43491	17266 ChEBI	L-sorbose	+	builds acid from
43491	17306 ChEBI	maltose	+	builds acid from
43491	37684 ChEBI	mannose	+	assimilation
43491	320061 ChEBI	methyl alpha-D-glucopyranoside	+	builds acid from
43491	51850 ChEBI	methyl pyruvate	+	respiration
43491	506227 ChEBI	N-acetylglucosamine	+	assimilation
43491	506227 ChEBI	N-acetylglucosamine	+	builds acid from
43491	506227 ChEBI	N-acetylglucosamine	+	respiration
43491		potassium 5-dehydro-D-gluconate	+	builds acid from
43491	17992 ChEBI	sucrose	+	builds acid from
43491	17992 ChEBI	sucrose	+	respiration
43491	27082 ChEBI	trehalose	+	builds acid from
43491	27082 ChEBI	trehalose	+	respiration
43491	32528 ChEBI	turanose	+	builds acid from

Enzymes

@ref	Value	Activity	Ec
43491	acid phosphatase	+	3.1.3.2
43491	alpha-chymotrypsin	+	3.4.21.1
43491	alpha-fucosidase	+	3.2.1.51
43491	beta-glucosidase	+	3.2.1.21
43491	catalase	-	1.11.1.6
43491	cytochrome oxidase	-	1.9.3.1
43491	esterase Lipase (C 8)	+
43491	naphthol-AS-BI-phosphohydrolase	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Other	#Decomposing animal
#Host	#Mammals	-
#Host Body-Site	#Gastrointestinal tract	#Small intestine

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
43491	the small intestine tract of a marten, Martes flavigula, that was killed on the road		Pocheon-si, Gyeonggi-do	Republic of Korea	KOR	Asia
67770	Small intestine of a marten, Martes flavigula	Martes flavigula	Pocheon-si, Gyeonggi-do	Republic of Korea	KOR	Asia
67771	From small intestinal tract of a marten, `Martes flavigula`		Pocheon-si, Gyeonggi-do	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence KX881420 (>99% sequence identity) for Vagococcus from Microbeatlas

Aquatic Samples	136
Soil Samples	288
Animal Samples	3833
Plant Samples	75
Total Samples	4332

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM202630v1 assembly for Vagococcus martis D7T301	contig	GCA_002026305	1768210.4	2987187325	1768210	76.34

16S sequences

@ref	Description	Accession	Database
43491	Vagococcus martis 16S ribosomal RNA gene, partial sequence	KX881420

GC content

@ref	GC-content (mol%)	Method
43491	33.8	Thermal denaturation, fluorometry
67771	33.8	genome sequence analysis

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Vagococcus martis D7T301
NCBI: GCA_002026305.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	91.95	yes
125438	anaerobic	anaerobicⓘ	no	86.38	yes
125438	aerobic	aerobicⓘ	no	96.62	yes
125438	spore-forming	spore-formingⓘ	no	79.86	no
125438	thermophilic	thermophileⓘ	no	95.90	yes
125438	flagellated	motile2+ⓘ	no	91.00	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Vagococcus martis sp. nov., isolated from the small intestine of a marten, Martes flavigula.	Tak EJ, Kim HS, Lee JY, Kang W, Hyun DW, Kim PS, Shin NR, Bae JW	Int J Syst Evol Microbiol	10.1099/ijsem.0.002131	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43491	Euon Jung Tak, Hyun Sik Kim, June-Young Lee, Woorim Kang, Dong-Wook Hyun, Pil Soo Kim, Na-Ri Shin, Jin-Woo Bae: Vagococcus martis sp. nov., isolated from the small intestine of a marten, Martes flavigula. IJSEM 67: 3398 - 3402 2017 ( DOI 10.1099/ijsem.0.002131 , PubMed 28857031 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Vagococcus martis (KCTC 21069, JCM 31178, D7T301)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_002026305

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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