Name: Tenacibaculum haliotis RA3-2
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140709

Type strain:

Species: Tenacibaculum haliotis

Strain Designation: RA3-2

Culture col. no.: KCTC 52419, NBRC 112382

Strain history: <- Jung-Hoon YOON, Sungkyunkwan Univ.

NCBI tax ID(s): 1888914 (species)

Section

Tenacibaculum haliotis RA3-2 is an aerobe, psychrophilic, Gram-negative bacterium that forms circular colonies and was isolated from gut of an abalone collected from the sea around Jeju island.

colony-forming
Gram-negative
motile
rod-shaped
aerobe
psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Tenacibaculum*
	Species	**Tenacibaculum haliotis**
	Full Scientific Name (LPSN)	Tenacibaculum haliotis Kim et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43482]	Gram stain	negative

[Ref.: #43482]	Cell length	0.4-10 µm

[Ref.: #43482]	Cell width	0.1-0.4 µm

[Ref.: #43482]	Cell shape	rod-shaped

[Ref.: #43482]	Motility	yes

[Ref.: #43482]	Flagellum arrangement	gliding

[Ref.: #43482]	Colony size	1.5-2 mm
[Ref.: #43482]	Colony color	greyish yellow
[Ref.: #43482]	Colony shape	circular
[Ref.: #43482]	Incubation period	5 days
[Ref.: #43482]	Cultivation medium used	MA agar

[Ref.: #43482]	Pigment production	no
[Ref.: #43482]	Pigment name	Flexirubin type

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43482]

Culture medium

Marine agar (MA)

[Ref.: #43482]

Culture medium growth

	Kind of temperature		Temperature
[Ref.: #43482]		optimum	20 °C
[Ref.: #43482]	no	growth	4 °C
[Ref.: #43482]	no	growth	30 °C
[Ref.: #67771]		growth	20 °C

[Ref.: #43482]	Temperature range	psychrophilic
[Ref.: #43482]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	psychrophilic

	Kind of pH		pH
[Ref.: #43482]		optimum	6.5-7.5
[Ref.: #43482]		growth	5
[Ref.: #43482]	no	growth	4.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43482]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #43482]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43482]		NaCl		optimum	2-3	%(w/v)
[Ref.: #43482]		NaCl		growth	1-4	%(w/v)

[Ref.: #43482]

Observation

Degenerative spherical cells are observed as the culture ages

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43482]	casein	+	hydrolysis
[Ref.: #43482]	cellobiose ChEBI	-	builds acid from
[Ref.: #43482]	D-fructose ChEBI	-	builds acid from
[Ref.: #43482]	D-galactose ChEBI	-	builds acid from
[Ref.: #43482]	D-glucose ChEBI	-	builds acid from
[Ref.: #43482]	D-mannitol ChEBI	-	builds acid from
[Ref.: #43482]	D-mannose ChEBI	-	builds acid from
[Ref.: #43482]	D-ribose ChEBI	+	builds acid from
[Ref.: #43482]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #43482]	D-xylose ChEBI	-	builds acid from
[Ref.: #43482]	esculin ChEBI	-	hydrolysis
[Ref.: #43482]	gelatin ChEBI	+	hydrolysis
[Ref.: #43482]	hypoxanthine ChEBI	-	hydrolysis
[Ref.: #43482]	L-arabinose ChEBI	-	builds acid from
[Ref.: #43482]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #43482]	L-tyrosine ChEBI	+	hydrolysis
[Ref.: #43482]	lactose ChEBI	-	builds acid from
[Ref.: #43482]	maltose ChEBI	-	builds acid from
[Ref.: #43482]	melezitose ChEBI	-	builds acid from
[Ref.: #43482]	melibiose ChEBI	-	builds acid from
[Ref.: #43482]	myo-inositol ChEBI	-	builds acid from
[Ref.: #43482]	nitrate ChEBI	+	reduction
[Ref.: #43482]	raffinose ChEBI	-	builds acid from
[Ref.: #43482]	starch ChEBI	-	hydrolysis
[Ref.: #43482]	sucrose ChEBI	-	builds acid from
[Ref.: #43482]	trehalose ChEBI	-	builds acid from
[Ref.: #43482]	tween 80 ChEBI	-	hydrolysis
[Ref.: #43482]	urea ChEBI	-	hydrolysis
[Ref.: #43482]	xanthine ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration
[Ref.: #43482]	ampicillin ChEBI	yes	10	µg (disc)
[Ref.: #43482]	carbenicillin ChEBI	yes	100	µg (disc)
[Ref.: #43482]	cephalothin ChEBI	yes	30	µg (disc)
[Ref.: #43482]	chloramphenicol ChEBI	yes	100	µg (disc)
[Ref.: #43482]	gentamicin ChEBI	yes	30	µg (disc)
[Ref.: #43482]	kanamycin ChEBI	yes	30	µg (disc)
[Ref.: #43482]	lincomycin ChEBI	yes	15	µg (disc)
[Ref.: #43482]	neomycin ChEBI	yes	30	µg (disc)
[Ref.: #43482]	novobiocin ChEBI	yes	5	µg (disc)
[Ref.: #43482]	oleandomycin ChEBI	yes	15	µg (disc)
[Ref.: #43482]	penicillin g ChEBI	yes	20	Unit (disc)
[Ref.: #43482]	polymyxin b ChEBI	yes	100	Unit (disc)
[Ref.: #43482]	streptomycin ChEBI	yes	50	µg (disc)
[Ref.: #43482]	tetracycline ChEBI	yes	30	µg (disc)
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43482]		hydrogen sulfide ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43482]	acid phosphatase	+/-	3.1.3.2
[Ref.: #43482]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43482]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43482]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43482]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43482]	alpha-glucosidase	-	3.2.1.20
[Ref.: #43482]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43482]	beta-galactosidase	-	3.2.1.23
[Ref.: #43482]	beta-glucosidase	-	3.2.1.21
[Ref.: #43482]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43482]	catalase	+/-	1.11.1.6
[Ref.: #43482]	cystine arylamidase	+/-	3.4.11.3
[Ref.: #43482]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43482]	esterase (C 4)	+/-
[Ref.: #43482]	esterase Lipase (C 8)	+/-
[Ref.: #43482]	leucine arylamidase	+	3.4.11.1
[Ref.: #43482]	lipase (C 14)	-
[Ref.: #43482]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #43482]	naphthol-AS-BI-phosphohydrolase	-
[Ref.: #43482]	trypsin	-	3.4.21.4
[Ref.: #43482]	valine arylamidase	+/-
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43482]

Fatty acid	Percentage
C15:0 iso	31.5
C15:0 iso 3OH	15.7
C15:1 iso G	8.7
C15:1ω6c	8.2
C14:0	8
C14:0 iso	6.4
C13:0 iso	5.9
C17:0 iso 3OH	4.2
C15:0 3OH	4
C16:0 iso 3OH	3.3
C16:1ω7c / C16:1ω6c	2.1
C16:0 3OH	1.8
C15:1H iso / C13:0 3OH	1.1
C15:0 anteiso	1.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43482]	Sample type/isolated from	gut of an abalone (Haliotis discus hannai) collected from the sea around Jeju island
[Ref.: #43482]	Geographic location (country and/or sea, region)	Sea around Jeju Island
[Ref.: #43482]	Country	Republic of Korea
[Ref.: #43482]	Country ISO 3 Code	KOR
[Ref.: #43482]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From abalone
[Ref.: #67771]	Geographic location (country and/or sea, region)	Jeju Special Self-Governing Province
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Host	#Fishes	-
#Host Body-Site	#Gastrointestinal tract	#Stomach

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43482]	16S rRNA gene sequence	KX450476		GenBank

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Tenacibaculum haliotis KCTC 52419	GCA_025215075	scaffold	GenBank	1888914 tax ID	*

[Ref.: #43482]

GC-content

31.7 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Tenacibaculum haliotis KCTC 52419 NCBI: GCA_025215075.1
[Ref.: #69480]	motile	no	87.639	no
[Ref.: #69480]	flagellated	no	95.132	no
[Ref.: #69480]	gram-positive	no	98.263	no
[Ref.: #69480]	anaerobic	no	99.674	no
[Ref.: #69480]	aerobic	yes	88.373	yes
[Ref.: #69480]	halophile	no	82.775	no
[Ref.: #69480]	spore-forming	no	95.946	no
[Ref.: #69480]	glucose-ferment	no	91.71	no
[Ref.: #69480]	thermophile	no	99.139	yes
[Ref.: #69480]	glucose-util	yes	80.088	no

Availability in culture collections External links

[Ref.: #43482]

Culture collection no.

KCTC 52419, NBRC 112382

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Tenacibaculum haliotis sp. nov., isolated from the gut of an abalone Haliotis discus hannai.	Kim YO, Park IS, Park S, Nam BH, Park JM, Kim DG, Yoon JH	Int J Syst Evol Microbiol	10.1099/ijsem.0.002099	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43482

Young-Ok Kim, In-Suk Park, Sooyeon Park, Bo-Hye Nam, Ji-Min Park, Dong-Gyun Kim, Jung-Hoon Yoon: Tenacibaculum haliotis sp. nov., isolated from the gut of an abalone Haliotis discus hannai. IJSEM 67: 3268 - 3273 2017 ( DOI 10.1099/ijsem.0.002099 , PubMed 28829017 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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Tenacibaculum haliotis KCTC 52419

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