Arcobacter lekithochrous (LMG 28652, JCM 31147, MA5)

Name: Arcobacter lekithochrous (LMG 28652, JCM 31147, MA5)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140702

Type strain

Strain Designation MA5

Culture col. no. LMG 28652 JCM 31147 MA5

NCBI tax ID(s) 1904463

Special Collections JCM Literature strains

History JCM <-- R. Tanaka; Grad. Sch. of Bioresour., Mie Univ., Japan; MA5.

Links

Arcobacter lekithochrous MA5 is an aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from gut of an abalone of the species Haliotis gigantea collected at a hachery.

Gram-negative motile rod-shaped colony-forming aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 403480

JCM 31147,CECT 8942,DSM 100870

@ref 20215

Last LPSN update 2026-05-29 08:39:47

Domain Bacteria

Phylum Pseudomonadota

Class Epsilonproteobacteria

Order Campylobacterales

Family Arcobacteraceae

Genus Arcobacter

Species Arcobacter lekithochrous

Full scientific name Arcobacter lekithochrous Diéguez et al. 2017

Synonyms (2)

Poseidonibacter lekithochrous
Arcobacter haliotis

BacDive ID	Other strains from **Arcobacter lekithochrous** (2)	Type strain
132928	A. lekithochrous DSM 100870, CECT 8942, LFT 1.7 (type strain)
132927	A. lekithochrous TM 4.6, DSM 100869, CECT 8943

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Flagellum arrangement	Confidence
43472	negative	0.8-2 µm	0.5-0.8 µm	rod-shaped	polar
125438	negative					98.477
125439	negative					97.57

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
43472	1 mm	white	circular	3 days	MA agar

Culture and growth conditions

Culture medium

@ref	Name	Growth
43472	0.01% TTC
43472	0.05% safranin
43472	0.1% sodium deoxycholate
43472	Marine agar (MA)
43472	Campylobacter blood-free charcoal cefoperazone deoxycholate (CCDA) agar
43472	CAT broth
43472	MacConkey agar
43472	Minimal medium

Culture temp

@ref	Growth	Type	Temperature (°C)
43472	positive	growth	10-25
43472	negative	growth	4
43472	negative	growth	30
43472	negative	growth	37
43472	negative	growth	42
43472	positive	optimum	25
67770	positive	growth	25

Culture pH

@ref	Ability	Type	PH
43472	positive	optimum	6-8

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
43472	aerobe
125439	obligate aerobe	98.037

Spore formation

@ref	Spore formation	Confidence
125439		98.812

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43472	NaCl	positive	growth	2-5 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43472	30089 ChEBI	acetate	+	carbon source
43472	30089 ChEBI	acetate	+	energy source
43472	58187 ChEBI	alginate	-	hydrolysis
43472		casein	-	hydrolysis
43472	62968 ChEBI	cellulose	-	hydrolysis
43472	17029 ChEBI	chitin	-	hydrolysis
43472	16947 ChEBI	citrate	-	carbon source
43472	16947 ChEBI	citrate	-	energy source
43472	15824 ChEBI	D-fructose	-	carbon source
43472	15824 ChEBI	D-fructose	-	energy source
43472	17634 ChEBI	D-glucose	-	carbon source
43472	17634 ChEBI	D-glucose	-	energy source
43472	16899 ChEBI	D-mannitol	-	carbon source
43472	16899 ChEBI	D-mannitol	-	energy source
43472	16024 ChEBI	D-mannose	-	carbon source
43472	16024 ChEBI	D-mannose	-	energy source
43472	17317 ChEBI	D-sorbose	-	carbon source
43472	17317 ChEBI	D-sorbose	-	energy source
43472	65327 ChEBI	D-xylose	-	carbon source
43472	65327 ChEBI	D-xylose	-	energy source
43472	16991 ChEBI	dna	-	hydrolysis
43472	4853 ChEBI	esculin	-	hydrolysis
43472	29806 ChEBI	fumarate	+	carbon source
43472	29806 ChEBI	fumarate	+	energy source
43472	5291 ChEBI	gelatin	-	hydrolysis
43472	606565 ChEBI	hippurate	-	hydrolysis
43472	16977 ChEBI	L-alanine	+	carbon source
43472	16977 ChEBI	L-alanine	+	energy source
43472	30849 ChEBI	L-arabinose	-	carbon source
43472	30849 ChEBI	L-arabinose	-	energy source
43472	16467 ChEBI	L-arginine	-	carbon source
43472	16467 ChEBI	L-arginine	-	energy source
43472	17196 ChEBI	L-asparagine	+	carbon source
43472	17196 ChEBI	L-asparagine	+	energy source
43472	29991 ChEBI	L-aspartate	+	carbon source
43472	29991 ChEBI	L-aspartate	+	energy source
43472	17561 ChEBI	L-cysteine	-	carbon source
43472	17561 ChEBI	L-cysteine	-	energy source
43472	18050 ChEBI	L-glutamine	+	carbon source
43472	18050 ChEBI	L-glutamine	+	energy source
43472	15603 ChEBI	L-leucine	-	carbon source
43472	15603 ChEBI	L-leucine	-	energy source
43472	18019 ChEBI	L-lysine	-	carbon source
43472	18019 ChEBI	L-lysine	-	energy source
43472	17203 ChEBI	L-proline	+	carbon source
43472	17203 ChEBI	L-proline	+	energy source
43472	17115 ChEBI	L-serine	-	carbon source
43472	17115 ChEBI	L-serine	-	energy source
43472	24996 ChEBI	lactate	+	carbon source
43472	24996 ChEBI	lactate	+	energy source
43472	17716 ChEBI	lactose	-	carbon source
43472	17716 ChEBI	lactose	-	energy source
43472	25115 ChEBI	malate	+	carbon source
43472	25115 ChEBI	malate	+	energy source
43472	15792 ChEBI	malonate	-	carbon source
43472	15792 ChEBI	malonate	-	energy source
43472	17268 ChEBI	myo-inositol	-	carbon source
43472	17268 ChEBI	myo-inositol	-	energy source
43472	17632 ChEBI	nitrate	+	reduction
43472	15361 ChEBI	pyruvate	+	carbon source
43472	15361 ChEBI	pyruvate	+	energy source
43472	28017 ChEBI	starch	-	hydrolysis
43472	30031 ChEBI	succinate	+	carbon source
43472	30031 ChEBI	succinate	+	energy source
43472	17992 ChEBI	sucrose	-	carbon source
43472	17992 ChEBI	sucrose	-	energy source
43472	53426 ChEBI	tween 80	-	hydrolysis

Antibiotic resistance

@ref	ChEBI	Metabolite	Is sensitive	Sensitivity conc.
43472	3493	cefoperazone		16 µg/mL

Metabolite production

@ref	Chebi-ID	Metabolite	Production
43472	15688 ChEBI	acetoin
43472	16136 ChEBI	hydrogen sulfide

Enzymes

@ref	Value	Activity	Ec
43472	alkaline phosphatase	-	3.1.3.1
43472	catalase	+	1.11.1.6
43472	cytochrome oxidase	+	1.9.3.1
43472	esterase	+
43472	gamma-glutamyltransferase	-	2.3.2.2
43472	L-arginine arylamidase	-
43472	L-aspartate arylamidase	-	3.4.11.21
43472	pyrrolidonyl arylamidase	-	3.4.19.3
43472	urease	+	3.5.1.5

Fatty acid profile

Metadata FA analysis

@ref

43472

Fatty acid	Percentage
C15:0 iso 2OH / C16:1ω7c	53.4
C12:0 3OH	11.5
C18:1ω7c	9.2
C14:0 3OH / C16:1 iso I	7.7
C12:0	5.4
C16:0	4
C14:0	3.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Invertebrates (Other)	#Mollusca
#Host Body-Site	#Gastrointestinal tract	-

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent	Host species
43472	gut of an abalone of the species Haliotis gigantea collected at a hachery	2009-07	Owase, Mie	Japan	JPN	Asia
67770	Gut of an abalone of the species Haliotis gigantea collected in Japan						Haliotis gigantea

Taxonmaps

69479

Global distribution of 16S sequence AB542077 (>99% sequence identity) for Poseidonibacter lekithochrous subclade from Microbeatlas

Aquatic Samples	2461
Soil Samples	53
Animal Samples	168
Plant Samples	18
Total Samples	2700

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM304976v1 assembly for Poseidonibacter lekithochrous LMG 28652	contig	GCA_003049765	710192.5	2791355110	1904463	60.11

16S sequences

@ref	Description	Accession	Database
43472	Arcobacter haliotis gene for 16S ribosomal RNA, partial sequence	AB542077

GC content

@ref	GC-content (mol%)	Method
43472	27.9	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM304976v1 assembly for Poseidonibacter lekithochrous LMG 28652
NCBI: GCA_003049765

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.04	no
125439	gram_stain	BacteriaNetⓘ	negative	97.57	no
125439	motility	BacteriaNetⓘ	no	60.69	no
125439	spore_formation	BacteriaNetⓘ	no	98.81	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Arcobacter haliotis strain LMG 28652
PATRIC: 710192.5

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.48	no
125438	anaerobic	anaerobicⓘ	no	71.04	yes
125438	spore-forming	spore-formingⓘ	no	89.10	no
125438	aerobic	aerobicⓘ	yes	52.20	yes
125438	thermophilic	thermophileⓘ	no	86.73	yes
125438	flagellated	motile2+ⓘ	yes	79.08	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Arcobacter haliotis Tanaka et al. 2017 is a later heterotypic synonym of Arcobacter lekithochrous Dieguez et al. 2017.	Dieguez AL, Perez-Cataluna A, Figueras MJ, Romalde JL	Int J Syst Evol Microbiol	10.1099/ijsem.0.002909	2018
Phylogeny	Arcobacter haliotis sp. nov., isolated from abalone species Haliotis gigantea.	Tanaka R, Cleenwerck I, Mizutani Y, Iehata S, Bossier P, Vandamme P	Int J Syst Evol Microbiol	10.1099/ijsem.0.002080	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43472	Reiji Tanaka, Ilse Cleenwerck, Yukino Mizutani, Shunpei Iehata, Peter Bossier, Peter Vandamme: Arcobacter haliotis sp. nov., isolated from abalone species Haliotis gigantea. IJSEM 67: 3050 - 3056 2017 ( DOI 10.1099/ijsem.0.002080 , PubMed 28820118 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Arcobacter lekithochrous (LMG 28652, JCM 31147, MA5)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Antibiotic resistance

Metabolite production

Enzymes

Fatty acid profile

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_003049765

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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