Pseudoalteromonas piratica (CCOS 1042, CIP 111189, OCN003)

Name: Pseudoalteromonas piratica (CCOS 1042, CIP 111189, OCN003)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140699

Type strain

Strain Designation OCN003

Culture col. no. CCOS 1042 CIP 111189 OCN003

NCBI tax ID(s) 1348114

Special Collections CIP Literature strains

History CIP <- 2016, S. Beurmann, Hawaii Univ., Manoa, Hawaii, USA: strain OCN003, "Pseudoalteromonas piraticus"

Links

Pseudoalteromonas piratica OCN003 is an obligate aerobe, halophilic, heterotroph bacterium that forms circular colonies and was isolated from Mucus taken from a diseased colony of the coral Montispora capitata in Kane'ohe Bay.

colony-forming rod-shaped motile Gram-negative heterotroph halophilic obligate aerobe Bacteria 16S sequence genome sequence

Name and taxonomic classification

SI-ID 413482

CIP 111189

@ref 20215

Last LPSN update 2026-02-09 11:33:41

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Alteromonadales

Family Pseudoalteromonadaceae

Genus Pseudoalteromonas

Species Pseudoalteromonas piratica

Full scientific name Pseudoalteromonas piratica Beurmann et al. 2017

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Flagellum arrangement	Confidence
43469	negative	1.4-2.6 µm	0.5-0.8 µm	rod-shaped	polar
125439	negative					96.3
125438						91.692
125438	negative					100
121838	negative			rod-shaped

Colony morphology

@ref	Colony size	Colony color	Colony shape	Medium used
43469	1-3 mm	Pale yellow	circular	Marine agar

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link
43469	Marine agar (MA)
121838	CIP Medium 13		Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
43469	positive	growth	14-39
43469	negative	growth	13
43469	negative	growth	40

Culture pH

@ref	Ability	Type	PH	PH range
43469	positive	growth	5.5-10	alkaliphile
43469		growth	5
43469		growth	10.5

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
43469	obligate aerobe
125439	obligate aerobe	99

Nutrition type

43469

Typeheterotroph

Spore formation

@ref	Spore formation	Confidence
125439		98.6

Halophily

@ref	Halophily level	Salt	Growth	Tested relation	Concentration
43469	halophilic	NaCl	positive	growth	1-6 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43469	37054 ChEBI	3-hydroxybutyrate	+	respiration
43469	16724 ChEBI	4-hydroxybutyrate	+	respiration
43469	30089 ChEBI	acetate	+	respiration
43469	17925 ChEBI	alpha-D-glucose	+	respiration
43469	27613 ChEBI	amygdalin	+	respiration
43469	16947 ChEBI	citrate	+	respiration
43469	15824 ChEBI	D-fructose	+	respiration
43469	16024 ChEBI	D-mannose	+	respiration
43469	28087 ChEBI	glycogen	+	respiration
43469	73804 ChEBI	glycyl L-aspartic acid	+	respiration
43469	24741 ChEBI	hydroxyproline	+	respiration
43469	17596 ChEBI	inosine	+	respiration
43469	16977 ChEBI	L-alanine	+	respiration
43469	73786 ChEBI	L-alanylglycine	+	respiration
43469	29991 ChEBI	L-aspartate	+	respiration
43469	29985 ChEBI	L-glutamate	+	respiration
43469	15603 ChEBI	L-leucine	+	respiration
43469	17203 ChEBI	L-proline	+	respiration
43469	17115 ChEBI	L-serine	+	respiration
43469	16857 ChEBI	L-threonine	+	respiration
43469	17306 ChEBI	maltose	+	respiration
43469	29864 ChEBI	mannitol	+	respiration
43469	17268 ChEBI	myo-inositol	+	respiration
43469	506227 ChEBI	N-acetylglucosamine	+	respiration
43469	17272 ChEBI	propionate	+	respiration
43469	17992 ChEBI	sucrose	+	respiration

Antibiotic resistance

@ref	ChEBI	Metabolite	Sensitivity conc.	Resistance conc.
43469	28971	ampicillin	100 µg (disc)
43469	17698	chloramphenicol	30 µg (disc)
43469	17833	gentamicin	30 µg (disc)
43469	6104	kanamycin		100 µg
43469	7507	neomycin	90 µg (disc)
43469	9215	spectinomycin	50 µg (disc)
43469	17076	streptomycin	50 µg (disc)

Metabolite production

@ref	Chebi-ID	Metabolite
43469	15688 ChEBI	acetoin
43469	35581 ChEBI	indole
43469	15138 ChEBI	sulfide

Enzymes

@ref	Value	Activity	Ec
43469	arginine decarboxylase	+	4.1.1.19
43469	beta-galactosidase	-	3.2.1.23
43469	catalase	+	1.11.1.6
43469	cytochrome oxidase	+	1.9.3.1
43469	esterase	+
43469	gelatinase	+
43469	lipase	+
43469	lysine decarboxylase	-	4.1.1.18
43469	ornithine decarboxylase	-	4.1.1.17
43469	tryptophan deaminase	+	4.1.99.1
43469	urease	-	3.5.1.5

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	gluconeogenesis	100	8 of 8
66794	suberin monomers biosynthesis	100	2 of 2
66794	methylglyoxal degradation	100	5 of 5
66794	biotin biosynthesis	100	4 of 4
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	L-lactaldehyde degradation	100	3 of 3
66794	formaldehyde oxidation	100	3 of 3
66794	coenzyme A metabolism	100	4 of 4
66794	teichoic acid biosynthesis	100	1 of 1
66794	adipate degradation	100	2 of 2
66794	Entner Doudoroff pathway	100	10 of 10
66794	ubiquinone biosynthesis	100	7 of 7
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	palmitate biosynthesis	100	22 of 22
66794	CMP-KDO biosynthesis	100	4 of 4
66794	ppGpp biosynthesis	100	4 of 4
66794	folate polyglutamylation	100	1 of 1
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	aerobactin biosynthesis	100	1 of 1
66794	butanoate fermentation	100	4 of 4
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	glycogen metabolism	100	5 of 5
66794	glutathione metabolism	92.86	13 of 14
66794	photosynthesis	92.86	13 of 14
66794	threonine metabolism	90	9 of 10
66794	lipid A biosynthesis	88.89	8 of 9
66794	valine metabolism	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	isoleucine metabolism	87.5	7 of 8
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	tetrahydrofolate metabolism	85.71	12 of 14
66794	phenylalanine metabolism	84.62	11 of 13
66794	leucine metabolism	84.62	11 of 13
66794	NAD metabolism	83.33	15 of 18
66794	glutamate and glutamine metabolism	82.14	23 of 28
66794	proline metabolism	81.82	9 of 11
66794	pentose phosphate pathway	81.82	9 of 11
66794	vitamin B6 metabolism	81.82	9 of 11
66794	methionine metabolism	80.77	21 of 26
66794	peptidoglycan biosynthesis	80	12 of 15
66794	cellulose degradation	80	4 of 5
66794	flavin biosynthesis	80	12 of 15
66794	heme metabolism	78.57	11 of 14
66794	d-mannose degradation	77.78	7 of 9
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	aspartate and asparagine metabolism	77.78	7 of 9
66794	vitamin B1 metabolism	76.92	10 of 13
66794	sulfopterin metabolism	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	acetate fermentation	75	3 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	purine metabolism	73.4	69 of 94
66794	alanine metabolism	72.41	21 of 29
66794	citric acid cycle	71.43	10 of 14
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	propanol degradation	71.43	5 of 7
66794	tyrosine metabolism	71.43	10 of 14
66794	octane oxidation	66.67	2 of 3
66794	glycolate and glyoxylate degradation	66.67	4 of 6
66794	acetoin degradation	66.67	2 of 3
66794	histidine metabolism	65.52	19 of 29
66794	pyrimidine metabolism	62.22	28 of 45
66794	urea cycle	61.54	8 of 13
66794	cysteine metabolism	61.11	11 of 18
66794	non-pathway related	60.53	23 of 38
66794	tryptophan metabolism	60.53	23 of 38
66794	gallate degradation	60	3 of 5
66794	metabolism of amino sugars and derivatives	60	3 of 5
66794	starch degradation	60	6 of 10
66794	propionate fermentation	60	6 of 10
66794	glycolysis	58.82	10 of 17
66794	isoprenoid biosynthesis	57.69	15 of 26
66794	lysine metabolism	57.14	24 of 42
66794	degradation of sugar alcohols	56.25	9 of 16
66794	lipid metabolism	54.84	17 of 31
66794	arginine metabolism	54.17	13 of 24
66794	sulfate reduction	53.85	7 of 13
66794	phosphatidylethanolamine bioynthesis	53.85	7 of 13
66794	quinate degradation	50	1 of 2
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	pantothenate biosynthesis	50	3 of 6
66794	cyclohexanol degradation	50	2 of 4
66794	ethanol fermentation	50	1 of 2
66794	oxidative phosphorylation	47.25	43 of 91
66794	degradation of hexoses	44.44	8 of 18
66794	polyamine pathway	43.48	10 of 23
66794	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
66794	ascorbate metabolism	40.91	9 of 22
66794	glycine betaine biosynthesis	40	2 of 5
66794	vitamin K metabolism	40	2 of 5
66794	factor 420 biosynthesis	40	2 of 5
66794	glycine metabolism	40	4 of 10
66794	arachidonate biosynthesis	40	2 of 5
66794	D-cycloserine biosynthesis	40	2 of 5
66794	lipoate biosynthesis	40	2 of 5
66794	3-chlorocatechol degradation	40	2 of 5
66794	arachidonic acid metabolism	38.89	7 of 18
66794	phenylpropanoid biosynthesis	38.46	5 of 13
66794	androgen and estrogen metabolism	37.5	6 of 16
66794	ketogluconate metabolism	37.5	3 of 8
66794	carnitine metabolism	37.5	3 of 8
66794	metabolism of disaccharids	36.36	4 of 11
66794	degradation of pentoses	35.71	10 of 28
66794	3-phenylpropionate degradation	33.33	5 of 15
66794	enterobactin biosynthesis	33.33	1 of 3
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	sulfoquinovose degradation	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	methane metabolism	33.33	1 of 3
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	cyanate degradation	33.33	1 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	nitrate assimilation	33.33	3 of 9
66794	vitamin B12 metabolism	32.35	11 of 34
66794	phenol degradation	30	6 of 20
66794	reductive acetyl coenzyme A pathway	28.57	2 of 7
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	toluene degradation	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	degradation of sugar acids	24	6 of 25
66794	carotenoid biosynthesis	22.73	5 of 22
66794	molybdenum cofactor biosynthesis	22.22	2 of 9
66794	4-hydroxymandelate degradation	22.22	2 of 9

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Invertebrates (Other)	#Cnidaria (Corals)
#Host Body Product	#Oral cavity and Airways	#Mucus
#Infection	#Disease	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
43469	Mucus taken from a diseased colony of the coral Montispora capitata in Kane'ohe Bay	Kane'ohe Bay, O'ahu, Hawaii	USA	USA	Australia and Oceania
121838	Environment, Coral, Montipora capitata	Kaneohe Bay, Hawaii, USA	United States of America	USA	North America	2008

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
121838	1	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM78839v1 assembly for Pseudoalteromonas piratica OCN003	complete	GCA_000788395	1348114.3	2639762812	1348114	98

16S sequences

@ref	Description	Accession	Database
43469	Pseudoalteromonas piratica strain OCN003 16S ribosomal RNA gene, partial sequence	KF042038

GC content

43469

GC-content (mol%)40

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Pseudoalteromonas piratica OCN003
NCBI: GCA_000788395

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.60	no
125439	motility	BacteriaNetⓘ	yes	60.70	no
125439	gram_stain	BacteriaNetⓘ	negative	96.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pseudoalteromonas piratica OCN003
NCBI: GCA_000788395.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	100.00	yes
125438	anaerobic	anaerobicⓘ	no	96.12	yes
125438	aerobic	aerobicⓘ	yes	76.09	yes
125438	spore-forming	spore-formingⓘ	no	85.27	no
125438	thermophilic	thermophileⓘ	no	97.98	no
125438	flagellated	motile2+ⓘ	yes	91.69	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
	Pseudoalteromonas piratica strain OCN003 is a coral pathogen that causes a switch from chronic to acute Montipora white syndrome in Montipora capitata.	Beurmann S, Ushijima B, Videau P, Svoboda CM, Smith AM, Rivers OS, Aeby GS, Callahan SM	PLoS One	10.1371/journal.pone.0188319	2017
Phylogeny	Pseudoalteromonas piratica sp. nov., a budding, prosthecate bacterium from diseased Montipora capitata, and emended description of the genus Pseudoalteromonas.	Beurmann S, Ushijima B, Svoboda CM, Videau P, Smith AM, Donachie SP, Aeby GS, Callahan SM	Int J Syst Evol Microbiol	10.1099/ijsem.0.001995	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43469	Silvia Beurmann, Blake Ushijima, Christina M. Svoboda, Patrick Videau, Ashley M. Smith, Stuart P. Donachie, Greta S. Aeby, Sean M. Callahan: Pseudoalteromonas piratica sp. nov., a budding, prosthecate bacterium from diseased Montipora capitata, and emended description of the genus Pseudoalteromonas. IJSEM 67: 2683 - 2688 2017 ( DOI 10.1099/ijsem.0.001995 , PubMed 28792373 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#121838	Collection of Institut Pasteur ; Curators of the CIP; CIP 111189
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Pseudoalteromonas piratica (CCOS 1042, CIP 111189, OCN003)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Nutrition type

Spore formation

Halophily

Metabolite utilization

Antibiotic resistance

Metabolite production

Enzymes

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000788395

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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