Name: Massilia phosphatilytica 12-OD1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140695

Type strain:

Species: Massilia phosphatilytica

Strain Designation: 12-OD1

Culture col. no.: CCTCC AB 2016251, LMG 29956, KCTC 52513

Strain history: <- Bang-Xiao Zheng, Insititue of Urban Environment, Chinese Academy of Sciences, China

NCBI tax ID(s): 2026176 (species)

Section

Massilia phosphatilytica 12-OD1 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from agricultural soil used for long-term crop growth.

colony-forming
Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Oxalobacteraceae*
	Genus	*Massilia*
	Species	**Massilia phosphatilytica**
	Full Scientific Name (LPSN)	Massilia phosphatilytica Zheng et al. 2017

Synonym

Telluria phosphatilytica

Information on morphological and physiological properties Morphology

[Ref.: #43464]	Gram stain	negative

[Ref.: #43464]	Cell length	2-3 µm

[Ref.: #43464]	Cell width	0.6-1 µm

[Ref.: #43464]	Cell shape	rod-shaped

[Ref.: #43464]	Colony size	2-3 mm
[Ref.: #43464]	Colony color	Yellow
[Ref.: #43464]	Colony shape	circular
[Ref.: #43464]	Incubation period	2 days
[Ref.: #43464]	Cultivation medium used	PVK

[Ref.: #43464]	Colony color	Yellowish
[Ref.: #43464]	Colony shape	circular
[Ref.: #43464]	Incubation period	2 days
[Ref.: #43464]	Cultivation medium used	R2A agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43464]

Culture medium

PVK

[Ref.: #43464]

Culture medium growth

[Ref.: #43464]

Culture medium

Reasoner's 2A agar (R2A)

[Ref.: #43464]

Culture medium growth

		Temperature
[Ref.: #43464]	growth	4-37 °C
[Ref.: #43464]	optimum	28-30 °C
[Ref.: #67771]	growth	28-30 °C

[Ref.: #43464]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43464]			optimum	7-7.5
[Ref.: #43464]			growth	5-8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43464]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #43464]

Ability of spore formation

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43464]	adipate ChEBI	+	assimilation
[Ref.: #43464]	amygdalin ChEBI	+	builds acid from
[Ref.: #43464]	arabinose ChEBI	+	assimilation
[Ref.: #43464]	arbutin ChEBI	-	builds acid from
[Ref.: #43464]	cellobiose ChEBI	+	builds acid from
[Ref.: #43464]	D-arabinose ChEBI	+	builds acid from
[Ref.: #43464]	D-arabitol ChEBI	-	builds acid from
[Ref.: #43464]	D-fructose ChEBI	+	assimilation
[Ref.: #43464]	D-fructose ChEBI	+	builds acid from
[Ref.: #43464]	D-fucose ChEBI	+	builds acid from
[Ref.: #43464]	D-galactose ChEBI	+	assimilation
[Ref.: #43464]	D-galactose ChEBI	+	builds acid from
[Ref.: #43464]	D-glucose ChEBI	-	builds acid from
[Ref.: #43464]	D-lyxose ChEBI	-	builds acid from
[Ref.: #43464]	D-mannitol ChEBI	-	builds acid from
[Ref.: #43464]	D-mannose ChEBI	+	assimilation
[Ref.: #43464]	D-mannose ChEBI	+	builds acid from
[Ref.: #43464]	D-ribose ChEBI	-	builds acid from
[Ref.: #43464]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #43464]	D-tagatose ChEBI	-	builds acid from
[Ref.: #43464]	D-trehalose ChEBI	+	assimilation
[Ref.: #43464]	D-trehalose ChEBI	+	builds acid from
[Ref.: #43464]	D-xylose ChEBI	+	assimilation
[Ref.: #43464]	D-xylose ChEBI	+	builds acid from
[Ref.: #43464]	decanoate ChEBI	-	assimilation
[Ref.: #43464]	erythritol ChEBI	-	builds acid from
[Ref.: #43464]	ferric citrate ChEBI	+	builds acid from
[Ref.: #43464]	galactitol ChEBI	-	builds acid from
[Ref.: #43464]	gentiobiose ChEBI	-	builds acid from
[Ref.: #43464]	glucose ChEBI	-	fermentation
[Ref.: #43464]	glucose ChEBI	+	assimilation
[Ref.: #43464]	glycerol ChEBI	-	builds acid from
[Ref.: #43464]	glycogen ChEBI	+	assimilation
[Ref.: #43464]	glycogen ChEBI	+	builds acid from
[Ref.: #43464]	inulin ChEBI	-	builds acid from
[Ref.: #43464]	L-arabinose ChEBI	+	assimilation
[Ref.: #43464]	L-arabinose ChEBI	+	builds acid from
[Ref.: #43464]	L-arabitol ChEBI	-	builds acid from
[Ref.: #43464]	L-fucose ChEBI	+	builds acid from
[Ref.: #43464]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #43464]	L-sorbose ChEBI	-	builds acid from
[Ref.: #43464]	L-xylose ChEBI	-	builds acid from
[Ref.: #43464]	lactose ChEBI	-	builds acid from
[Ref.: #43464]	malate ChEBI	+	assimilation
[Ref.: #43464]	maltose ChEBI	+	assimilation
[Ref.: #43464]	maltose ChEBI	+	builds acid from
[Ref.: #43464]	mannitol ChEBI	-	assimilation
[Ref.: #43464]	mannose ChEBI	+	assimilation
[Ref.: #43464]	melezitose ChEBI	-	builds acid from
[Ref.: #43464]	melibiose ChEBI	-	builds acid from
[Ref.: #43464]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from
[Ref.: #43464]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #43464]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #43464]	myo-inositol ChEBI	-	builds acid from
[Ref.: #43464]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #43464]	N-acetylglucosamine ChEBI	-	builds acid from
[Ref.: #43464]	nitrate ChEBI	+	reduction
[Ref.: #43464]	phenylacetate ChEBI	+	assimilation
[Ref.: #43464]	potassium 2-dehydro-D-gluconate	+	assimilation
[Ref.: #43464]	potassium 2-dehydro-D-gluconate	+	builds acid from
[Ref.: #43464]	potassium 5-dehydro-D-gluconate	-	builds acid from
[Ref.: #43464]	potassium gluconate ChEBI	+	assimilation
[Ref.: #43464]	potassium gluconate ChEBI	+	builds acid from
[Ref.: #43464]	raffinose ChEBI	+	assimilation
[Ref.: #43464]	raffinose ChEBI	+	builds acid from
[Ref.: #43464]	ribitol ChEBI	-	builds acid from
[Ref.: #43464]	salicin ChEBI	-	builds acid from
[Ref.: #43464]	sodium citrate ChEBI	+	assimilation
[Ref.: #43464]	starch ChEBI	+	assimilation
[Ref.: #43464]	starch ChEBI	+	builds acid from
[Ref.: #43464]	sucrose ChEBI	+	assimilation
[Ref.: #43464]	sucrose ChEBI	+	builds acid from
[Ref.: #43464]	turanose ChEBI	-	builds acid from
[Ref.: #43464]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43464]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43464]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43464]	beta-galactosidase	+	3.2.1.23
[Ref.: #43464]	beta-glucosidase	+	3.2.1.21
[Ref.: #43464]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43464]	protease	+
[Ref.: #43464]	urease	-	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43464]	Sample type/isolated from	agricultural soil used for long-term crop growth
[Ref.: #43464]	Geographic location (country and/or sea, region)	Hailun, Heilongjjang
[Ref.: #43464]	Country	China
[Ref.: #43464]	Country ISO 3 Code	CHN
[Ref.: #43464]	Continent	Asia
[Ref.: #43464]	Geographic location	47.4330°/126.6330°

[Ref.: #67771]	Sample type/isolated from	From soil
[Ref.: #67771]	Geographic location (country and/or sea, region)	Hailun, Heilongjiang
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
[Ref.: #67771]	Geographic location	47.4333°/126.6330°
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Field
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KU647206 (>99% sequence identity) for Telluria from Microbeatlas

Aquatic Samples	7
Soil Samples	7
Animal Samples	4
Plant Samples	8
Total Samples	26

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43464]	16S rRNA gene sequence	KU647206		GenBank

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Massilia phosphatilytica 12-OD1	GCA_002968015	contig	GenBank	2026176 tax ID	*
[Ref.: #66792]	Massilia phosphatilytica 12-OD1	2791355049	draft	JGI IMG/M	2026176 tax ID	*

[Ref.: #43464]

GC-content

67.72 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #43464]

Culture collection no.

CCTCC AB 2016251, LMG 29956, KCTC 52513

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Massilia cellulosiltytica sp. nov., a novel cellulose-degrading bacterium isolated from rhizosphere soil of rice (Oryza sativa L.) and its whole genome analysis.	Du C, Li C, Cao P, Li T, Du D, Wang X, Zhao J, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-021-01618-3	2021	*
Phylogeny	Massilia phosphatilytica sp. nov., a phosphate solubilizing bacteria isolated from a long-term fertilized soil.	Zheng BX, Bi QF, Hao XL, Zhou GW, Yang XR	Int J Syst Evol Microbiol	10.1099/ijsem.0.001916	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43464

Bang-Xiao Zheng, Qing-Fang Bi, Xiu-Li Hao, Guo-Wei Zhou, Xiao-Ru Yang: Massilia phosphatilytica sp. nov., a phosphate solubilizing bacteria isolated from a long-term fertilized soil. IJSEM 67: 2514 - 2519 2017 ( DOI 10.1099/ijsem.0.001916 , PubMed 28853679 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Massilia phosphatilytica in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF