Massilia phosphatilytica (CCTCC AB 2016251, LMG 29956, KCTC 52513)

Name: Massilia phosphatilytica (CCTCC AB 2016251, LMG 29956, KCTC 52513)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140695

Type strain

Strain Designation 12-OD1

Culture col. no. CCTCC AB 2016251 LMG 29956 KCTC 52513 12-OD1

NCBI tax ID(s) 2026176

Special Collections KCTC Literature strains

History <- Bang-Xiao Zheng, Insititue of Urban Environment, Chinese Academy of Sciences, China

Links

Massilia phosphatilytica 12-OD1 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from agricultural soil used for long-term crop growth.

Gram-negative rod-shaped colony-forming aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 273043

LMG 29956,KCTC 52513

@ref 20215

Last LPSN update 2026-02-09 11:33:41

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Oxalobacteraceae

Genus Massilia

Species Massilia phosphatilytica

Full scientific name Massilia phosphatilytica Zheng et al. 2017

Synonyms (1)

Telluria phosphatilytica

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
43464	negative	2-3 µm	0.6-1 µm	rod-shaped
125439	negative				99.6

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
43464	2-3 mm	Yellow	circular	2 days	PVK
43464		Yellowish	circular	2 days	R2A agar

Culture and growth conditions

Culture medium

@ref	Name	Growth
43464	PVK
43464	Reasoner's 2A agar (R2A)

Culture temp

@ref	Growth	Type	Temperature (°C)
43464	positive	growth	4-37
43464	positive	optimum	28-30
67771	positive	growth	28-30

Culture pH

@ref	Ability	Type	PH
43464	positive	optimum	7-7.5
43464	positive	growth	5-8

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
43464	aerobe
67771	aerobe
125439	obligate aerobe	96.7

Spore formation

@ref	Spore formation	Confidence
43464
125439		98.6

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43464	17128 ChEBI	adipate	+	assimilation
43464	27613 ChEBI	amygdalin	+	builds acid from
43464	22599 ChEBI	arabinose	+	assimilation
43464	18305 ChEBI	arbutin	-	builds acid from
43464	17057 ChEBI	cellobiose	+	builds acid from
43464	17108 ChEBI	D-arabinose	+	builds acid from
43464	18333 ChEBI	D-arabitol	-	builds acid from
43464	15824 ChEBI	D-fructose	+	assimilation
43464	15824 ChEBI	D-fructose	+	builds acid from
43464	28847 ChEBI	D-fucose	+	builds acid from
43464	12936 ChEBI	D-galactose	+	assimilation
43464	12936 ChEBI	D-galactose	+	builds acid from
43464	17634 ChEBI	D-glucose	-	builds acid from
43464	62318 ChEBI	D-lyxose	-	builds acid from
43464	16899 ChEBI	D-mannitol	-	builds acid from
43464	16024 ChEBI	D-mannose	+	assimilation
43464	16024 ChEBI	D-mannose	+	builds acid from
43464	16988 ChEBI	D-ribose	-	builds acid from
43464	17924 ChEBI	D-sorbitol	-	builds acid from
43464	16443 ChEBI	D-tagatose	-	builds acid from
43464	16551 ChEBI	D-trehalose	+	assimilation
43464	16551 ChEBI	D-trehalose	+	builds acid from
43464	65327 ChEBI	D-xylose	+	assimilation
43464	65327 ChEBI	D-xylose	+	builds acid from
43464	27689 ChEBI	decanoate	-	assimilation
43464	17113 ChEBI	erythritol	-	builds acid from
43464	31605 ChEBI	ferric citrate	+	builds acid from
43464	16813 ChEBI	galactitol	-	builds acid from
43464	28066 ChEBI	gentiobiose	-	builds acid from
43464	17234 ChEBI	glucose	-	fermentation
43464	17234 ChEBI	glucose	+	assimilation
43464	17754 ChEBI	glycerol	-	builds acid from
43464	28087 ChEBI	glycogen	+	assimilation
43464	28087 ChEBI	glycogen	+	builds acid from
43464	15443 ChEBI	inulin	-	builds acid from
43464	30849 ChEBI	L-arabinose	+	assimilation
43464	30849 ChEBI	L-arabinose	+	builds acid from
43464	18403 ChEBI	L-arabitol	-	builds acid from
43464	18287 ChEBI	L-fucose	+	builds acid from
43464	62345 ChEBI	L-rhamnose	-	builds acid from
43464	17266 ChEBI	L-sorbose	-	builds acid from
43464	65328 ChEBI	L-xylose	-	builds acid from
43464	17716 ChEBI	lactose	-	builds acid from
43464	25115 ChEBI	malate	+	assimilation
43464	17306 ChEBI	maltose	+	assimilation
43464	17306 ChEBI	maltose	+	builds acid from
43464	29864 ChEBI	mannitol	-	assimilation
43464	37684 ChEBI	mannose	+	assimilation
43464	6731 ChEBI	melezitose	-	builds acid from
43464	28053 ChEBI	melibiose	-	builds acid from
43464	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from
43464	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from
43464	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from
43464	17268 ChEBI	myo-inositol	-	builds acid from
43464	506227 ChEBI	N-acetylglucosamine	-	assimilation
43464	506227 ChEBI	N-acetylglucosamine	-	builds acid from
43464	17632 ChEBI	nitrate	+	reduction
43464	18401 ChEBI	phenylacetate	+	assimilation
43464		potassium 2-dehydro-D-gluconate	+	assimilation
43464		potassium 2-dehydro-D-gluconate	+	builds acid from
43464		potassium 5-dehydro-D-gluconate	-	builds acid from
43464	32032 ChEBI	potassium gluconate	+	assimilation
43464	32032 ChEBI	potassium gluconate	+	builds acid from
43464	16634 ChEBI	raffinose	+	assimilation
43464	16634 ChEBI	raffinose	+	builds acid from
43464	15963 ChEBI	ribitol	-	builds acid from
43464	17814 ChEBI	salicin	-	builds acid from
43464	53258 ChEBI	sodium citrate	+	assimilation
43464	28017 ChEBI	starch	+	assimilation
43464	28017 ChEBI	starch	+	builds acid from
43464	17992 ChEBI	sucrose	+	assimilation
43464	17992 ChEBI	sucrose	+	builds acid from
43464	32528 ChEBI	turanose	-	builds acid from
43464	17151 ChEBI	xylitol	-	builds acid from

Metabolite production

@ref	Chebi-ID	Metabolite	Production
43464	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
43464	arginine dihydrolase	-	3.5.3.6
43464	beta-galactosidase	+	3.2.1.23
43464	beta-glucosidase	+	3.2.1.21
43464	cytochrome oxidase	+	1.9.3.1
43464	protease	+
43464	urease	-	3.5.1.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Agriculture	#Field
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
43464	agricultural soil used for long-term crop growth	Hailun, Heilongjjang	China	CHN	Asia	47.433	126.633 47.433/126.633
67771	From soil	Hailun, Heilongjiang	China	CHN	Asia	47.4333	126.633 47.4333/126.633

Taxonmaps

69479

Global distribution of 16S sequence KU647206 (>99% sequence identity) for Telluria from Microbeatlas

Aquatic Samples	7
Soil Samples	7
Animal Samples	4
Plant Samples	8
Total Samples	26

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM296801v1 assembly for Massilia phosphatilytica 12-OD1	contig	GCA_002968015	2026176.3	2791355049	2026176	36.93

16S sequences

@ref	Description	Accession	Database
43464	Massilia phosphatilytica strain 12-OD1 16S ribosomal RNA gene, partial sequence	KU647206

GC content

@ref	GC-content (mol%)	Method
43464	67.72	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Massilia phosphatilytica 12-OD1
NCBI: GCA_002968015

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.60	no
125439	motility	BacteriaNetⓘ	yes	82.70	no
125439	gram_stain	BacteriaNetⓘ	negative	99.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.70	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Description of Massilia orientalis sp. nov., Isolated from Rhizosphere Soil of Ageratina adenophora.	Xia Y, Qian XF, Chen X, Wang B, Wang YX.	Curr Microbiol	10.1007/s00284-024-04008-w	2024
Phylogeny	Massilia cellulosiltytica sp. nov., a novel cellulose-degrading bacterium isolated from rhizosphere soil of rice (Oryza sativa L.) and its whole genome analysis.	Du C, Li C, Cao P, Li T, Du D, Wang X, Zhao J, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-021-01618-3	2021
Phylogeny	Massilia phosphatilytica sp. nov., a phosphate solubilizing bacteria isolated from a long-term fertilized soil.	Zheng BX, Bi QF, Hao XL, Zhou GW, Yang XR	Int J Syst Evol Microbiol	10.1099/ijsem.0.001916	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43464	Bang-Xiao Zheng, Qing-Fang Bi, Xiu-Li Hao, Guo-Wei Zhou, Xiao-Ru Yang: Massilia phosphatilytica sp. nov., a phosphate solubilizing bacteria isolated from a long-term fertilized soil. IJSEM 67: 2514 - 2519 2017 ( DOI 10.1099/ijsem.0.001916 , PubMed 28853679 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Massilia phosphatilytica (CCTCC AB 2016251, LMG 29956, KCTC 52513)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_002968015

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media