Name: Dictyobacter aurantiacus S-27
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140692

Type strain:

Species: Dictyobacter aurantiacus

Strain Designation: S-27

Culture col. no.: NBRC 109595, InaCC B312

NCBI tax ID(s): 1936993 (species)

Section

Dictyobacter aurantiacus S-27 is an aerobe, heterotroph, spore-forming bacterium that was isolated from paddy soil in Ganung Salak .

Gram-positive
spore-forming
aerobe
heterotroph
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Chloroflexota*
	Class	*Ktedonobacteria*
	Order	*Ktedonobacterales*
	Family	*Dictyobacteraceae*
	Genus	*Dictyobacter*
	Species	**Dictyobacter aurantiacus**
	Full Scientific Name (LPSN)	Dictyobacter aurantiacus Yabe et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43461]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %99.998

[Ref.: #69480]	Motility	no Confidence in %90.235

[Ref.: #43461]	Colony color	Orange
[Ref.: #43461]	Cultivation medium used	1/10 R2A agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43461]

Culture medium

1/10 R2A agar

[Ref.: #43461]

Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #43461]			growth	20-37 °C
[Ref.: #43461]			optimum	25-30 °C

[Ref.: #43461]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #43461]			optimum	6
[Ref.: #43461]			growth	3.5-8.6

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43461]

Oxygen tolerance

aerobe

[Ref.: #43461]

Nutrition type

heterotroph

[Ref.: #43461]	Spore description	spherical
[Ref.: #43461]	Type of spore	spore
[Ref.: #43461]	Ability of spore formation	yes
[Ref.: #69480]	Ability of spore formation	yes Confidence in %99.526

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43461]		NaCl		growth	1	%
[Ref.: #43461]		NaCl		growth	2	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43461]	casein	+	hydrolysis
[Ref.: #43461]	cellulose ChEBI	+	hydrolysis
[Ref.: #43461]	D-fructose ChEBI	-	assimilation
[Ref.: #43461]	D-glucose ChEBI	-	assimilation
[Ref.: #43461]	D-mannitol ChEBI	-	assimilation
[Ref.: #43461]	D-xylose ChEBI	-	assimilation
[Ref.: #43461]	L-arabinose ChEBI	-	assimilation
[Ref.: #43461]	L-rhamnose ChEBI	+	assimilation
[Ref.: #43461]	L-rhamnose ChEBI	+	carbon source
[Ref.: #43461]	myo-inositol ChEBI	-	assimilation
[Ref.: #43461]	raffinose ChEBI	-	assimilation
[Ref.: #43461]	starch ChEBI	+	hydrolysis
[Ref.: #43461]	sucrose ChEBI	-	assimilation
[Ref.: #43461]	xylan ChEBI	+	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #43461]		catalase	+	1.11.1.6

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43461]

Fatty acid	Percentage
C17:0 iso	34
C16:1 2OH	32.3

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	acetate fermentation	100	4 of 4
[Ref.: #66794]	kanosamine biosynthesis II	100	2 of 2
[Ref.: #66794]	hydrogen production	100	5 of 5
[Ref.: #66794]	molybdenum cofactor biosynthesis	100	9 of 9
[Ref.: #66794]	phenylacetate degradation (aerobic)	100	5 of 5
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	vitamin K metabolism	100	5 of 5
[Ref.: #66794]	glycogen metabolism	100	5 of 5
[Ref.: #66794]	glycine betaine biosynthesis	100	5 of 5
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	propanol degradation	100	7 of 7
[Ref.: #66794]	starch degradation	100	10 of 10
[Ref.: #66794]	phenylmercury acetate degradation	100	2 of 2
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	aspartate and asparagine metabolism	100	9 of 9
[Ref.: #66794]	4-hydroxymandelate degradation	100	9 of 9
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	ethanol fermentation	100	2 of 2
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	butanoate fermentation	100	4 of 4
[Ref.: #66794]	cardiolipin biosynthesis	100	7 of 7
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	sulfopterin metabolism	100	4 of 4
[Ref.: #66794]	isoleucine metabolism	100	8 of 8
[Ref.: #66794]	ceramide biosynthesis	100	1 of 1
[Ref.: #66794]	gluconeogenesis	100	8 of 8
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	cellulose degradation	100	5 of 5
[Ref.: #66794]	C4 and CAM-carbon fixation	100	8 of 8
[Ref.: #66794]	heme metabolism	92.86	13 of 14
[Ref.: #66794]	phenylalanine metabolism	92.31	12 of 13
[Ref.: #66794]	vitamin B1 metabolism	92.31	12 of 13
[Ref.: #66794]	pentose phosphate pathway	90.91	10 of 11
[Ref.: #66794]	Entner Doudoroff pathway	90	9 of 10
[Ref.: #66794]	threonine metabolism	90	9 of 10
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	NAD metabolism	88.89	16 of 18
[Ref.: #66794]	d-mannose degradation	88.89	8 of 9
[Ref.: #66794]	CO2 fixation in Crenarchaeota	88.89	8 of 9
[Ref.: #66794]	valine metabolism	88.89	8 of 9
[Ref.: #66794]	ketogluconate metabolism	87.5	7 of 8
[Ref.: #66794]	flavin biosynthesis	86.67	13 of 15
[Ref.: #66794]	purine metabolism	86.17	81 of 94
[Ref.: #66794]	glutamate and glutamine metabolism	85.71	24 of 28
[Ref.: #66794]	photosynthesis	85.71	12 of 14
[Ref.: #66794]	reductive acetyl coenzyme A pathway	85.71	6 of 7
[Ref.: #66794]	leucine metabolism	84.62	11 of 13
[Ref.: #66794]	pyrimidine metabolism	84.44	38 of 45
[Ref.: #66794]	selenocysteine biosynthesis	83.33	5 of 6
[Ref.: #66794]	d-xylose degradation	81.82	9 of 11
[Ref.: #66794]	degradation of sugar alcohols	81.25	13 of 16
[Ref.: #66794]	ethylmalonyl-CoA pathway	80	4 of 5
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	3-chlorocatechol degradation	80	4 of 5
[Ref.: #66794]	propionate fermentation	80	8 of 10
[Ref.: #66794]	degradation of sugar acids	80	20 of 25
[Ref.: #66794]	factor 420 biosynthesis	80	4 of 5
[Ref.: #66794]	alanine metabolism	79.31	23 of 29
[Ref.: #66794]	citric acid cycle	78.57	11 of 14
[Ref.: #66794]	serine metabolism	77.78	7 of 9
[Ref.: #66794]	allantoin degradation	77.78	7 of 9
[Ref.: #66794]	glycolysis	76.47	13 of 17
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	tryptophan metabolism	73.68	28 of 38
[Ref.: #66794]	methionine metabolism	73.08	19 of 26
[Ref.: #66794]	metabolism of disaccharids	72.73	8 of 11
[Ref.: #66794]	degradation of hexoses	72.22	13 of 18
[Ref.: #66794]	degradation of pentoses	71.43	20 of 28
[Ref.: #66794]	ubiquinone biosynthesis	71.43	5 of 7
[Ref.: #66794]	tyrosine metabolism	71.43	10 of 14
[Ref.: #66794]	tetrahydrofolate metabolism	71.43	10 of 14
[Ref.: #66794]	non-pathway related	71.05	27 of 38
[Ref.: #66794]	arginine metabolism	70.83	17 of 24
[Ref.: #66794]	myo-inositol biosynthesis	70	7 of 10
[Ref.: #66794]	urea cycle	69.23	9 of 13
[Ref.: #66794]	oxidative phosphorylation	67.03	61 of 91
[Ref.: #66794]	cyanate degradation	66.67	2 of 3
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	cysteine metabolism	66.67	12 of 18
[Ref.: #66794]	glycolate and glyoxylate degradation	66.67	4 of 6
[Ref.: #66794]	IAA biosynthesis	66.67	2 of 3
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	enterobactin biosynthesis	66.67	2 of 3
[Ref.: #66794]	histidine metabolism	65.52	19 of 29
[Ref.: #66794]	glutathione metabolism	64.29	9 of 14
[Ref.: #66794]	androgen and estrogen metabolism	62.5	10 of 16
[Ref.: #66794]	isoprenoid biosynthesis	61.54	16 of 26
[Ref.: #66794]	lipid metabolism	61.29	19 of 31
[Ref.: #66794]	gallate degradation	60	3 of 5
[Ref.: #66794]	lipoate biosynthesis	60	3 of 5
[Ref.: #66794]	metabolism of amino sugars and derivatives	60	3 of 5
[Ref.: #66794]	coenzyme M biosynthesis	60	6 of 10
[Ref.: #66794]	lysine metabolism	59.52	25 of 42
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	58.33	7 of 12
[Ref.: #66794]	phenol degradation	55	11 of 20
[Ref.: #66794]	ascorbate metabolism	54.55	12 of 22
[Ref.: #66794]	cholesterol biosynthesis	54.55	6 of 11
[Ref.: #66794]	carotenoid biosynthesis	54.55	12 of 22
[Ref.: #66794]	sulfate reduction	53.85	7 of 13
[Ref.: #66794]	resorcinol degradation	50	1 of 2
[Ref.: #66794]	aminopropanol phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	lactate fermentation	50	2 of 4
[Ref.: #66794]	mannosylglycerate biosynthesis	50	1 of 2
[Ref.: #66794]	ribulose monophosphate pathway	50	1 of 2
[Ref.: #66794]	toluene degradation	50	2 of 4
[Ref.: #66794]	glycine metabolism	50	5 of 10
[Ref.: #66794]	quinate degradation	50	1 of 2
[Ref.: #66794]	proline metabolism	45.45	5 of 11
[Ref.: #66794]	benzoyl-CoA degradation	42.86	3 of 7
[Ref.: #66794]	aclacinomycin biosynthesis	42.86	3 of 7
[Ref.: #66794]	methanogenesis from CO2	41.67	5 of 12
[Ref.: #66794]	vitamin B12 metabolism	41.18	14 of 34
[Ref.: #66794]	bile acid biosynthesis, neutral pathway	41.18	7 of 17
[Ref.: #66794]	3-phenylpropionate degradation	40	6 of 15
[Ref.: #66794]	bacilysin biosynthesis	40	2 of 5
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	dTDPLrhamnose biosynthesis	37.5	3 of 8
[Ref.: #66794]	carnitine metabolism	37.5	3 of 8
[Ref.: #66794]	dolichyl-diphosphooligosaccharide biosynthesis	36.36	4 of 11
[Ref.: #66794]	acetyl CoA biosynthesis	33.33	1 of 3
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	lipid A biosynthesis	33.33	3 of 9
[Ref.: #66794]	pantothenate biosynthesis	33.33	2 of 6
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	chlorophyll metabolism	33.33	6 of 18
[Ref.: #66794]	ginsenoside metabolism	31.25	5 of 16
[Ref.: #66794]	phenylpropanoid biosynthesis	30.77	4 of 13
[Ref.: #66794]	polyamine pathway	30.43	7 of 23
[Ref.: #66794]	mevalonate metabolism	28.57	2 of 7
[Ref.: #66794]	arachidonic acid metabolism	27.78	5 of 18
[Ref.: #66794]	vitamin B6 metabolism	27.27	3 of 11
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	CMP-KDO biosynthesis	25	1 of 4
[Ref.: #66794]	catecholamine biosynthesis	25	1 of 4
[Ref.: #66794]	nitrate assimilation	22.22	2 of 9
[Ref.: #66794]	daunorubicin biosynthesis	22.22	2 of 9
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43461]	Sample type/isolated from	paddy soil in Ganung Salak (Mount Salak)
[Ref.: #43461]	Geographic location (country and/or sea, region)	West Java
[Ref.: #43461]	Country	Indonesia
[Ref.: #43461]	Country ISO 3 Code	IDN
[Ref.: #43461]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Field
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC210808 (>99% sequence identity) for Dictyobacter aurantiacus subclade from Microbeatlas

Aquatic Samples	49
Soil Samples	898
Animal Samples	79
Plant Samples	20
Total Samples	1046

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43461]	16S rRNA gene sequence	LC210808		GenBank

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Dictyobacter aurantiacus S27	GCA_003967515	contig	GenBank	1936993 tax ID	*
[Ref.: #66792]	Dictyobacter aurantiacus strain S-27 strain S27	1936993.3	wgs	PATRIC	1936993 tax ID	*

[Ref.: #43461]

GC-content

55.7 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Dictyobacter aurantiacus strain S-27 strain S27 PATRIC: 1936993.3
[Ref.: #69481]	spore-forming	yes	87	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Dictyobacter aurantiacus strain S-27 strain S27 PATRIC: 1936993.3
[Ref.: #69480]	motile	no	88.9	no
[Ref.: #69480]	gram-positive	yes	87.319	yes
[Ref.: #69480]	anaerobic	no	97.051	no
[Ref.: #69480]	aerobic	yes	84.945	yes
[Ref.: #69480]	halophile	no	93.876	yes
[Ref.: #69480]	spore-forming	yes	52.688	no
[Ref.: #69480]	glucose-util	yes	79.531	yes
[Ref.: #69480]	flagellated	no	97.267	no
[Ref.: #69480]	thermophile	no	89.385	yes
[Ref.: #69480]	glucose-ferment	no	88.38	no

Availability in culture collections External links

[Ref.: #43461]

Culture collection no.

NBRC 109595, InaCC B312

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Tengunoibacter tsumagoiensis gen. nov., sp. nov., Dictyobacter kobayashii sp. nov., Dictyobacter alpinus sp. nov., and description of Dictyobacteraceae fam. nov. within the order Ktedonobacterales isolated from Tengu-no-mugimeshi, a soil-like granular mass of micro-organisms, and emended descriptions of the genera Ktedonobacter and Dictyobacter.	Wang CM, Zheng Y, Sakai Y, Toyoda A, Minakuchi Y, Abe K, Yokota A, Yabe S	Int J Syst Evol Microbiol	10.1099/ijsem.0.003396	2019	*
Phylogeny	Dictyobacter aurantiacus gen. nov., sp. nov., a member of the family Ktedonobacteraceae, isolated from soil, and emended description of the genus Thermosporothrix.	Yabe S, Sakai Y, Abe K, Yokota A, Take A, Matsumoto A, Sugiharto A, Susilowati D, Hamada M, Nara K, Made Sudiana I, Otsuka S	Int J Syst Evol Microbiol	10.1099/ijsem.0.001985	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43461

Shuhei Yabe, Yasuteru Sakai, Keietsu Abe, Akira Yokota, Akira Take, Atsuko Matsumoto, Arwan Sugiharto, Dwiningsih Susilowati, Moriyuki Hamada, Kazuhide Nara, I.Made Sudiana, Shigeto Otsuka: Dictyobacter aurantiacus gen. nov., sp. nov., a member of the family Ktedonobacteraceae, isolated from soil, and emended description of the genus Thermosporothrix. IJSEM 67: 2615 - 2621 2017 ( DOI 10.1099/ijsem.0.001985 , PubMed 28758628 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Dictyobacter aurantiacus strain S-27 strain S27

Dictyobacter aurantiacus strain S-27 strain S27

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