Dictyobacter aurantiacus (NBRC 109595, InaCC B312, S-27)

Name: Dictyobacter aurantiacus (NBRC 109595, InaCC B312, S-27)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140692

Type strain

Strain Designation S-27

Culture col. no. NBRC 109595 InaCC B312 S-27

NCBI tax ID(s) 1936993

Special Collections Literature strains

Links

Dictyobacter aurantiacus S-27 is an aerobe, heterotroph, spore-forming bacterium that was isolated from paddy soil in Ganung Salak .

spore-forming Gram-positive aerobe heterotroph genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 133544

NBRC 109595

@ref 20215

Last LPSN update 2026-05-29 08:39:46

Domain Bacteria

Phylum Chloroflexota

Class Ktedonobacteria

Order Ktedonobacterales

Family Dictyobacteraceae

Genus Dictyobacter

Species Dictyobacter aurantiacus

Full scientific name Dictyobacter aurantiacus Yabe et al. 2017

Morphology

Cell morphology

43461

Gram stainpositive

Colony morphology

@ref	Colony color	Medium used
43461	Orange	1/10 R2A agar

Culture and growth conditions

Culture medium

@ref	Name	Growth
43461	1/10 R2A agar

Culture temp

@ref	Growth	Type	Temperature (°C)
43461	positive	growth	20-37
43461	positive	optimum	25-30

Culture pH

@ref	Ability	Type	PH	PH range
43461	positive	optimum	6
43461	positive	growth	3.5-8.6	alkaliphile

Physiology and metabolism

Oxygen tolerance

43461

Oxygen toleranceaerobe

Nutrition type

43461

Typeheterotroph

Spore formation

@ref	Spore description	Type of spore	Spore formation	Confidence
43461	spherical	spore
125439				97.082

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43461	NaCl	positive	growth	1 %
43461	NaCl	positive	growth	2 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43461		casein	+	hydrolysis
43461	62968 ChEBI	cellulose	+	hydrolysis
43461	15824 ChEBI	D-fructose	-	assimilation
43461	17634 ChEBI	D-glucose	-	assimilation
43461	16899 ChEBI	D-mannitol	-	assimilation
43461	65327 ChEBI	D-xylose	-	assimilation
43461	30849 ChEBI	L-arabinose	-	assimilation
43461	62345 ChEBI	L-rhamnose	+	assimilation
43461	62345 ChEBI	L-rhamnose	+	carbon source
43461	17268 ChEBI	myo-inositol	-	assimilation
43461	16634 ChEBI	raffinose	-	assimilation
43461	28017 ChEBI	starch	+	hydrolysis
43461	17992 ChEBI	sucrose	-	assimilation
43461	37166 ChEBI	xylan	+	hydrolysis

Enzymes

@ref	Value	Activity	Ec
43461	catalase	+	1.11.1.6

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	acetate fermentation	100	4 of 4
66794	kanosamine biosynthesis II	100	2 of 2
66794	hydrogen production	100	5 of 5
66794	molybdenum cofactor biosynthesis	100	9 of 9
66794	phenylacetate degradation (aerobic)	100	5 of 5
66794	adipate degradation	100	2 of 2
66794	vitamin K metabolism	100	5 of 5
66794	glycogen metabolism	100	5 of 5
66794	glycine betaine biosynthesis	100	5 of 5
66794	formaldehyde oxidation	100	3 of 3
66794	propanol degradation	100	7 of 7
66794	starch degradation	100	10 of 10
66794	phenylmercury acetate degradation	100	2 of 2
66794	palmitate biosynthesis	100	22 of 22
66794	aspartate and asparagine metabolism	100	9 of 9
66794	4-hydroxymandelate degradation	100	9 of 9
66794	ppGpp biosynthesis	100	4 of 4
66794	ethanol fermentation	100	2 of 2
66794	methylglyoxal degradation	100	5 of 5
66794	butanoate fermentation	100	4 of 4
66794	cardiolipin biosynthesis	100	7 of 7
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	coenzyme A metabolism	100	4 of 4
66794	sulfopterin metabolism	100	4 of 4
66794	isoleucine metabolism	100	8 of 8
66794	ceramide biosynthesis	100	1 of 1
66794	gluconeogenesis	100	8 of 8
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	folate polyglutamylation	100	1 of 1
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	suberin monomers biosynthesis	100	2 of 2
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	cellulose degradation	100	5 of 5
66794	C4 and CAM-carbon fixation	100	8 of 8
66794	heme metabolism	92.86	13 of 14
66794	phenylalanine metabolism	92.31	12 of 13
66794	vitamin B1 metabolism	92.31	12 of 13
66794	pentose phosphate pathway	90.91	10 of 11
66794	Entner Doudoroff pathway	90	9 of 10
66794	threonine metabolism	90	9 of 10
66794	chorismate metabolism	88.89	8 of 9
66794	NAD metabolism	88.89	16 of 18
66794	d-mannose degradation	88.89	8 of 9
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	valine metabolism	88.89	8 of 9
66794	ketogluconate metabolism	87.5	7 of 8
66794	flavin biosynthesis	86.67	13 of 15
66794	purine metabolism	86.17	81 of 94
66794	glutamate and glutamine metabolism	85.71	24 of 28
66794	photosynthesis	85.71	12 of 14
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	leucine metabolism	84.62	11 of 13
66794	pyrimidine metabolism	84.44	38 of 45
66794	selenocysteine biosynthesis	83.33	5 of 6
66794	d-xylose degradation	81.82	9 of 11
66794	degradation of sugar alcohols	81.25	13 of 16
66794	ethylmalonyl-CoA pathway	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	3-chlorocatechol degradation	80	4 of 5
66794	propionate fermentation	80	8 of 10
66794	degradation of sugar acids	80	20 of 25
66794	factor 420 biosynthesis	80	4 of 5
66794	alanine metabolism	79.31	23 of 29
66794	citric acid cycle	78.57	11 of 14
66794	serine metabolism	77.78	7 of 9
66794	allantoin degradation	77.78	7 of 9
66794	glycolysis	76.47	13 of 17
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	glycogen biosynthesis	75	3 of 4
66794	tryptophan metabolism	73.68	28 of 38
66794	methionine metabolism	73.08	19 of 26
66794	metabolism of disaccharids	72.73	8 of 11
66794	degradation of hexoses	72.22	13 of 18
66794	degradation of pentoses	71.43	20 of 28
66794	ubiquinone biosynthesis	71.43	5 of 7
66794	tyrosine metabolism	71.43	10 of 14
66794	tetrahydrofolate metabolism	71.43	10 of 14
66794	non-pathway related	71.05	27 of 38
66794	arginine metabolism	70.83	17 of 24
66794	myo-inositol biosynthesis	70	7 of 10
66794	urea cycle	69.23	9 of 13
66794	oxidative phosphorylation	67.03	61 of 91
66794	cyanate degradation	66.67	2 of 3
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	octane oxidation	66.67	2 of 3
66794	cysteine metabolism	66.67	12 of 18
66794	glycolate and glyoxylate degradation	66.67	4 of 6
66794	IAA biosynthesis	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	enterobactin biosynthesis	66.67	2 of 3
66794	histidine metabolism	65.52	19 of 29
66794	glutathione metabolism	64.29	9 of 14
66794	androgen and estrogen metabolism	62.5	10 of 16
66794	isoprenoid biosynthesis	61.54	16 of 26
66794	lipid metabolism	61.29	19 of 31
66794	gallate degradation	60	3 of 5
66794	lipoate biosynthesis	60	3 of 5
66794	metabolism of amino sugars and derivatives	60	3 of 5
66794	coenzyme M biosynthesis	60	6 of 10
66794	lysine metabolism	59.52	25 of 42
66794	degradation of aromatic, nitrogen containing compounds	58.33	7 of 12
66794	phenol degradation	55	11 of 20
66794	ascorbate metabolism	54.55	12 of 22
66794	cholesterol biosynthesis	54.55	6 of 11
66794	carotenoid biosynthesis	54.55	12 of 22
66794	sulfate reduction	53.85	7 of 13
66794	resorcinol degradation	50	1 of 2
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	lactate fermentation	50	2 of 4
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	ribulose monophosphate pathway	50	1 of 2
66794	toluene degradation	50	2 of 4
66794	glycine metabolism	50	5 of 10
66794	quinate degradation	50	1 of 2
66794	proline metabolism	45.45	5 of 11
66794	benzoyl-CoA degradation	42.86	3 of 7
66794	aclacinomycin biosynthesis	42.86	3 of 7
66794	methanogenesis from CO2	41.67	5 of 12
66794	vitamin B12 metabolism	41.18	14 of 34
66794	bile acid biosynthesis, neutral pathway	41.18	7 of 17
66794	3-phenylpropionate degradation	40	6 of 15
66794	bacilysin biosynthesis	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	dTDPLrhamnose biosynthesis	37.5	3 of 8
66794	carnitine metabolism	37.5	3 of 8
66794	dolichyl-diphosphooligosaccharide biosynthesis	36.36	4 of 11
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	lipid A biosynthesis	33.33	3 of 9
66794	pantothenate biosynthesis	33.33	2 of 6
66794	sphingosine metabolism	33.33	2 of 6
66794	chlorophyll metabolism	33.33	6 of 18
66794	ginsenoside metabolism	31.25	5 of 16
66794	phenylpropanoid biosynthesis	30.77	4 of 13
66794	polyamine pathway	30.43	7 of 23
66794	mevalonate metabolism	28.57	2 of 7
66794	arachidonic acid metabolism	27.78	5 of 18
66794	vitamin B6 metabolism	27.27	3 of 11
66794	cyclohexanol degradation	25	1 of 4
66794	CMP-KDO biosynthesis	25	1 of 4
66794	catecholamine biosynthesis	25	1 of 4
66794	nitrate assimilation	22.22	2 of 9
66794	daunorubicin biosynthesis	22.22	2 of 9

Fatty acid profile

Metadata FA analysis

@ref

43461

Fatty acid	Percentage
C17:0 iso	34
C16:1 2OH	32.3

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Agriculture	#Field
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
43461	paddy soil in Ganung Salak (Mount Salak)	West Java	Indonesia	IDN	Asia

Taxonmaps

69479

Global distribution of 16S sequence LC210808 (>99% sequence identity) for Dictyobacter aurantiacus subclade from Microbeatlas

Aquatic Samples	49
Soil Samples	898
Animal Samples	79
Plant Samples	20
Total Samples	1046

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM396751v1 assembly for Dictyobacter aurantiacus S-27	contig	GCA_003967515	1936993.3	2840502759	1936993	72.16

16S sequences

@ref	Description	Accession	Database
43461	Dictyobacter aurantiacus gene for 16S ribosomal RNA, partial sequence	LC210808

GC content

@ref	GC-content (mol%)	Method
43461	55.7	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM396751v1 assembly for Dictyobacter aurantiacus S-27
NCBI: GCA_003967515

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	69.30	no
125439	gram_stain	BacteriaNetⓘ	negative	78.24	no
125439	motility	BacteriaNetⓘ	no	63.06	no
125439	spore_formation	BacteriaNetⓘ	no	97.08	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Dictyobacter aurantiacus strain S-27 strain S27
PATRIC: 1936993.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	76.61	yes
125438	anaerobic	anaerobicⓘ	no	91.20	yes
125438	spore-forming	spore-formingⓘ	yes	72.37	yes
125438	aerobic	aerobicⓘ	yes	86.51	yes
125438	thermophilic	thermophileⓘ	no	78.10	no
125438	flagellated	motile2+ⓘ	no	80.95	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Tengunoibacter tsumagoiensis gen. nov., sp. nov., Dictyobacter kobayashii sp. nov., Dictyobacter alpinus sp. nov., and description of Dictyobacteraceae fam. nov. within the order Ktedonobacterales isolated from Tengu-no-mugimeshi, a soil-like granular mass of micro-organisms, and emended descriptions of the genera Ktedonobacter and Dictyobacter.	Wang CM, Zheng Y, Sakai Y, Toyoda A, Minakuchi Y, Abe K, Yokota A, Yabe S	Int J Syst Evol Microbiol	10.1099/ijsem.0.003396	2019
Phylogeny	Dictyobacter aurantiacus gen. nov., sp. nov., a member of the family Ktedonobacteraceae, isolated from soil, and emended description of the genus Thermosporothrix.	Yabe S, Sakai Y, Abe K, Yokota A, Take A, Matsumoto A, Sugiharto A, Susilowati D, Hamada M, Nara K, Made Sudiana I, Otsuka S	Int J Syst Evol Microbiol	10.1099/ijsem.0.001985	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43461	Shuhei Yabe, Yasuteru Sakai, Keietsu Abe, Akira Yokota, Akira Take, Atsuko Matsumoto, Arwan Sugiharto, Dwiningsih Susilowati, Moriyuki Hamada, Kazuhide Nara, I.Made Sudiana, Shigeto Otsuka: Dictyobacter aurantiacus gen. nov., sp. nov., a member of the family Ktedonobacteraceae, isolated from soil, and emended description of the genus Thermosporothrix. IJSEM 67: 2615 - 2621 2017 ( DOI 10.1099/ijsem.0.001985 , PubMed 28758628 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Dictyobacter aurantiacus (NBRC 109595, InaCC B312, S-27)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Nutrition type

Spore formation

Halophily

Metabolite utilization

Enzymes

Pathway annotation

Fatty acid profile

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_003967515

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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