Name: Chengkuizengella sediminis J15A17
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140684

Type strain:

Species: Chengkuizengella sediminis

Strain Designation: J15A17

Culture col. no.: KCTC 33759, MCCC 1H00137

Strain history: <- Zong-Jun Du, Shandong Univ.

NCBI tax ID(s): 1885917 (species)

Section

Chengkuizengella sediminis J15A17 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from From the sediment of South China Sea.

Gram-positive
motile
rod-shaped
spore-forming
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Chengkuizengella*
	Species	**Chengkuizengella sediminis**
	Full Scientific Name (LPSN)	Chengkuizengella sediminis Cao et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43450]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #43450]	Cell length	0.5-4 µm

[Ref.: #43450]	Cell width	0.2-0.5 µm

[Ref.: #43450]	Cell shape	rod-shaped

[Ref.: #43450]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %94.374

[Ref.: #43450]	Flagellum arrangement	peritrichous

[Ref.: #43450]	Colony size	2-3 mm
[Ref.: #43450]	Colony color	creamy white
[Ref.: #43450]	Incubation period	2 days
[Ref.: #43450]	Cultivation medium used	Marine agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43450]

Culture medium

Marine agar (MA)

[Ref.: #43450]

Culture medium growth

		Temperature
[Ref.: #43450]	growth	4-40 °C
[Ref.: #43450]	optimum	30-33 °C
[Ref.: #67771]	growth	28 °C

[Ref.: #43450]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	Kind of pH		pH
[Ref.: #43450]		optimum	7.5
[Ref.: #43450]	no	growth	6
[Ref.: #43450]	no	growth	9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43450]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #43450]	Spore description	round; terminal position in swollen sporangia
[Ref.: #43450]	Type of spore	endospore
[Ref.: #43450]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43450]		NaCl		growth	0-5	%(w/v)
[Ref.: #43450]		NaCl		optimum	3	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43450]	arginine ChEBI	-	hydrolysis
[Ref.: #43450]	casein	-	hydrolysis
[Ref.: #43450]	cellobiose ChEBI	-	builds acid from
[Ref.: #43450]	citrate ChEBI	-	carbon source
[Ref.: #43450]	D-fructose ChEBI	-	builds acid from
[Ref.: #43450]	D-galactose ChEBI	-	builds acid from
[Ref.: #43450]	D-glucose ChEBI	-	builds acid from
[Ref.: #43450]	D-ribose ChEBI	+	builds acid from
[Ref.: #43450]	dna ChEBI	-	hydrolysis
[Ref.: #43450]	esculin ChEBI	+	hydrolysis
[Ref.: #43450]	gelatin ChEBI	+	hydrolysis
[Ref.: #43450]	glucose ChEBI	-	fermentation
[Ref.: #43450]	glucuronamide ChEBI	+	oxidation
[Ref.: #43450]	inulin ChEBI	-	builds acid from
[Ref.: #43450]	L-arabinose ChEBI	-	builds acid from
[Ref.: #43450]	L-rhamnose ChEBI	+	oxidation
[Ref.: #43450]	lactose ChEBI	-	builds acid from
[Ref.: #43450]	melibiose ChEBI	-	builds acid from
[Ref.: #43450]	nitrate ChEBI	+	reduction
[Ref.: #43450]	O-nitrophenyl-beta-D-galactopyranosid	+	hydrolysis
[Ref.: #43450]	starch ChEBI	-	hydrolysis
[Ref.: #43450]	sucrose ChEBI	-	builds acid from
[Ref.: #43450]	turanose ChEBI	-	builds acid from
[Ref.: #43450]	tween 80 ChEBI	+	hydrolysis
[Ref.: #43450]	urea ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #43450]	ampicillin ChEBI	yes	10	µg (disc)
[Ref.: #43450]	chloramphenicol ChEBI	yes	30	µg (disc)
[Ref.: #43450]	clindamycin ChEBI	yes	2	µg (disc)
[Ref.: #43450]	gentamicin ChEBI	yes	10	µg (disc)
[Ref.: #43450]	kanamycin ChEBI				yes	30	µg (disc)
[Ref.: #43450]	polymyxin b ChEBI				yes	300	µg (disc)
[Ref.: #43450]	rifampicin ChEBI	yes	5	µg (disc)
[Ref.: #43450]	streptomycin ChEBI	yes	10	µg (disc)
[Ref.: #43450]	tetracycline ChEBI	yes	30	µg (disc)

	Metabolite	Production
[Ref.: #43450]	acetoin ChEBI	no
[Ref.: #43450]	hydrogen sulfide ChEBI	no
[Ref.: #43450]	indole ChEBI	no

	Metabolite	Voges-Proskauer-test	Methylred-test	Citrate test
[Ref.: #43450]	acetoin ChEBI	-
[Ref.: #43450]	citrate ChEBI			-
[Ref.: #43450]	glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #43450]	acid phosphatase	-	3.1.3.2
[Ref.: #43450]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43450]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #43450]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43450]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43450]	alpha-glucosidase	-	3.2.1.20
[Ref.: #43450]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43450]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43450]	beta-galactosidase	-	3.2.1.23
[Ref.: #43450]	beta-glucosidase	-	3.2.1.21
[Ref.: #43450]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43450]	catalase	-	1.11.1.6
[Ref.: #43450]	cystine arylamidase	-	3.4.11.3
[Ref.: #43450]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43450]	esterase (C 4)	+
[Ref.: #43450]	esterase Lipase (C 8)	+
[Ref.: #43450]	leucine arylamidase	+	3.4.11.1
[Ref.: #43450]	lipase (C 14)	-
[Ref.: #43450]	lysine decarboxylase	-	4.1.1.18
[Ref.: #43450]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #43450]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43450]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #43450]	trypsin	-	3.4.21.4
[Ref.: #43450]	tryptophan deaminase	-	4.1.99.1
[Ref.: #43450]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67771]	Sample type/isolated from	From the sediment of South China Sea
[Ref.: #67771]	Geographic location (country and/or sea, region)	Qingdao China.
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia

[Ref.: #43450]	Sample type/isolated from	Sediment of the South China Sea
[Ref.: #43450]	Sampling date	2012-04-25
[Ref.: #43450]	Geographic location (country and/or sea, region)	South China Sea
[Ref.: #43450]	Country	China
[Ref.: #43450]	Country ISO 3 Code	CHN
[Ref.: #43450]	Continent	Asia
[Ref.: #43450]	Geographic location	5.6085°/113.6490°
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KU870236 (>99% sequence identity) for Chengkuizengella sediminis subclade from Microbeatlas

Aquatic Samples	76
Soil Samples	4
Animal Samples	16
Plant Samples	1
Total Samples	97

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43450]	16S rRNA gene sequence	KU870236		GenBank

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Chengkuizengella sediminis J15A17	GCA_010078385	contig	GenBank	1885917 tax ID	*
[Ref.: #66792]	Chengkuizengella sediminis strain J15A17	1885917.4	wgs	PATRIC	1885917 tax ID	*

[Ref.: #43450]

GC-content

37.4 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Chengkuizengella sediminis strain J15A17 PATRIC: 1885917.4
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Chengkuizengella sediminis strain J15A17 PATRIC: 1885917.4
[Ref.: #69480]	motile	yes	87.816	yes
[Ref.: #69480]	gram-positive	yes	86.619	no
[Ref.: #69480]	anaerobic	no	98.06	yes
[Ref.: #69480]	aerobic	yes	87.18	no
[Ref.: #69480]	halophile	no	90.568	no
[Ref.: #69480]	spore-forming	yes	95.876	yes
[Ref.: #69480]	glucose-util	yes	80.597	no
[Ref.: #69480]	flagellated	yes	74.784	yes
[Ref.: #69480]	thermophile	no	87.579	no
[Ref.: #69480]	glucose-ferment	no	93.744	no

Availability in culture collections External links

[Ref.: #43450]

Culture collection no.

KCTC 33759, MCCC 1H00137

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Longirhabdus pacifica gen. nov., sp. nov., isolated from a deep-sea hydrothermal sediment in the West Pacific Ocean.	Chen RW, Zhang J, He YQ, Wang KX, Li C, Long LJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.003526	2019	*
Phylogeny	Chengkuizengella marina sp. nov., isolated from deep-sea sediment of the Pacific Ocean.	Yang J, Lai Q, Liao X, Zhao Q, Shao Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.003530	2019	*
Phylogeny	Chengkuizengella sediminis gen. nov. sp. nov., isolated from sediment.	Cao WR, Guo LY, Du ZJ, Das A, Saren G, Jiang MY, Dunlap CA, Rooney AP, Yu XK, Li TG	Int J Syst Evol Microbiol	10.1099/ijsem.0.002006	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43450

Wen-Rui Cao, Ling-Yun Guo, Zong-Jun Du, Anindita Das, Gaowa Saren, Ming-Yu Jiang, Christopher A. Dunlap, Alejandro P. Rooney, Xin-Ke Yu, Tie-Gang Li: Chengkuizengella sediminis gen. nov. sp. nov., isolated from sediment. IJSEM 67: 2672 - 2678 2017 ( DOI 10.1099/ijsem.0.002006 , PubMed 28786783 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Chengkuizengella sediminis strain J15A17

Chengkuizengella sediminis strain J15A17

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