Name: Terrimonas terrae T16R-129
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140677

Type strain:

Species: Terrimonas terrae

Strain Designation: T16R-129

Culture col. no.: KACC 18787, JCM 31603

Strain history: S.-W. Kwon; KACC, South Korea; T16R-129.

NCBI tax ID(s): 1864941 (species)

Section

Terrimonas terrae T16R-129 is an aerobe, non-halophilic, Gram-negative bacterium that was isolated from the rhizosphere of a tomato plant collected at a farm located on Buyeo-gun of Chungcheongnam-do.

Gram-negative
rod-shaped
aerobe
non-halophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Chitinophagia*
	Order	*Chitinophagales*
	Family	*Chitinophagaceae*
	Genus	*Terrimonas*
	Species	**Terrimonas terrae**
	Full Scientific Name (LPSN)	Terrimonas terrae Kim et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43441]	Gram stain	negative

[Ref.: #43441]	Cell length	1.5-2.5 µm

[Ref.: #43441]	Cell width	0.5-0.8 µm

[Ref.: #43441]	Cell shape	rod-shaped

[Ref.: #43441]	Motility	no

[Ref.: #43441]	Colony color	Yellow
[Ref.: #43441]	Incubation period	3 days
[Ref.: #43441]	Cultivation medium used	R2A agar medium

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43441]

Culture medium

Reasoner's 2A agar (R2A)

[Ref.: #43441]

Culture medium growth

		Temperature
[Ref.: #43441]	growth	15-40 °C
[Ref.: #43441]	optimum	28-30 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #43441]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43441]			optimum	7
[Ref.: #43441]			growth	7-9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43441]

Oxygen tolerance

aerobe

[Ref.: #43441]

Halophily / tolerance level

non-halophilic

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43441]		NaCl		optimum	0	%(w/v)
[Ref.: #43441]		NaCl	no	growth	1	%(w/v)

[Ref.: #67770]

Observation

quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43441]	3-hydroxybenzoate ChEBI	-	assimilation
[Ref.: #43441]	3-hydroxybutyrate ChEBI	-	assimilation
[Ref.: #43441]	4-hydroxybenzoate ChEBI	-	assimilation
[Ref.: #43441]	adipate ChEBI	-	assimilation
[Ref.: #43441]	carboxymethylcellulose ChEBI	+	hydrolysis
[Ref.: #43441]	casein	-	hydrolysis
[Ref.: #43441]	chitin ChEBI	-	hydrolysis
[Ref.: #43441]	D-glucose ChEBI	+	assimilation
[Ref.: #43441]	D-mannitol ChEBI	-	assimilation
[Ref.: #43441]	D-mannose ChEBI	+	assimilation
[Ref.: #43441]	D-ribose ChEBI	-	assimilation
[Ref.: #43441]	D-sorbitol ChEBI	-	assimilation
[Ref.: #43441]	decanoate ChEBI	-	assimilation
[Ref.: #43441]	dna ChEBI	-	hydrolysis
[Ref.: #43441]	esculin ChEBI	+	hydrolysis
[Ref.: #43441]	gelatin ChEBI	-	hydrolysis
[Ref.: #43441]	glucose ChEBI	-	fermentation
[Ref.: #43441]	glycogen ChEBI	+	assimilation
[Ref.: #43441]	hypoxanthine ChEBI	-	hydrolysis
[Ref.: #43441]	itaconate ChEBI	-	assimilation
[Ref.: #43441]	L-alanine ChEBI	-	assimilation
[Ref.: #43441]	L-arabinose ChEBI	+	assimilation
[Ref.: #43441]	L-fucose ChEBI	-	assimilation
[Ref.: #43441]	L-histidine ChEBI	-	assimilation
[Ref.: #43441]	L-proline ChEBI	+	assimilation
[Ref.: #43441]	L-rhamnose ChEBI	-	assimilation
[Ref.: #43441]	L-serine ChEBI	-	assimilation
[Ref.: #43441]	lactate ChEBI	-	assimilation
[Ref.: #43441]	malate ChEBI	-	assimilation
[Ref.: #43441]	maltose ChEBI	+	assimilation
[Ref.: #43441]	melibiose ChEBI	-	assimilation
[Ref.: #43441]	myo-inositol ChEBI	-	assimilation
[Ref.: #43441]	N-acetylglucosamine ChEBI	+	assimilation
[Ref.: #43441]	nitrate ChEBI	-	reduction
[Ref.: #43441]	phenylacetate ChEBI	-	assimilation
[Ref.: #43441]	potassium 2-dehydro-D-gluconate	-	assimilation
[Ref.: #43441]	potassium 5-dehydro-D-gluconate	-	assimilation
[Ref.: #43441]	potassium gluconate ChEBI	-	assimilation
[Ref.: #43441]	propionate ChEBI	-	assimilation
[Ref.: #43441]	salicin ChEBI	+	assimilation
[Ref.: #43441]	sodium acetate ChEBI	-	assimilation
[Ref.: #43441]	sodium citrate ChEBI	-	assimilation
[Ref.: #43441]	sodium malonate ChEBI	-	assimilation
[Ref.: #43441]	starch ChEBI	-	hydrolysis
[Ref.: #43441]	suberic acid ChEBI	-	assimilation
[Ref.: #43441]	sucrose ChEBI	+	assimilation
[Ref.: #43441]	tween 80 ChEBI	-	hydrolysis
[Ref.: #43441]	tyrosine ChEBI	+	hydrolysis
[Ref.: #43441]	urea ChEBI	-	hydrolysis
[Ref.: #43441]	valerate ChEBI	-	assimilation
[Ref.: #43441]	xanthine ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43441]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43441]	acid phosphatase	+	3.1.3.2
[Ref.: #43441]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43441]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43441]	alpha-fucosidase	+	3.2.1.51
[Ref.: #43441]	alpha-galactosidase	+	3.2.1.22
[Ref.: #43441]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43441]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43441]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43441]	beta-galactosidase	+	3.2.1.23
[Ref.: #43441]	beta-glucosidase	+	3.2.1.21
[Ref.: #43441]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43441]	catalase	+	1.11.1.6
[Ref.: #43441]	cystine arylamidase	+	3.4.11.3
[Ref.: #43441]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43441]	esterase (C 4)	+
[Ref.: #43441]	esterase Lipase (C 8)	-
[Ref.: #43441]	leucine arylamidase	+	3.4.11.1
[Ref.: #43441]	lipase (C 14)	-
[Ref.: #43441]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #43441]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43441]	trypsin	+	3.4.21.4
[Ref.: #43441]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43441]	Sample type/isolated from	the rhizosphere of a tomato plant collected at a farm located on Buyeo-gun of Chungcheongnam-do
[Ref.: #43441]	Geographic location (country and/or sea, region)	Buyeo-gun of Chungcheongnam-do
[Ref.: #43441]	Country	Republic of Korea
[Ref.: #43441]	Country ISO 3 Code	KOR
[Ref.: #43441]	Continent	Asia
[Ref.: #43441]	Geographic location	36.2930°/126.9320°

[Ref.: #67770]	Sample type/isolated from	Rhizosphere of a tomato plant at a farm located on Buyeo-gun of Chungcheongnam-do
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	-
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Rhizosphere

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43441]	16S rRNA gene sequence	KX417306		GenBank

[Ref.: #43441]	GC-content	46 mol%	Thermal denaturation, fluorometry
[Ref.: #67770]	GC-content	46 mol%	thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #43441]

Culture collection no.

KACC 18787, JCM 31603

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Agriterribacter soli sp. nov., isolated from herbicide-contaminated soil.	Song M, Mao ZB, Liu Y, Wang GL, Li F, Zhang L	Int J Syst Evol Microbiol	10.1099/ijsem.0.005436	2022	*
Phylogeny	Terrimonas terrae sp. nov., isolated from the rhizosphere of a tomato plant.	Kim SJ, Cho H, Ahn JH, Weon HY, Joa JH, Hong SB, Seok SJ, Kim JS, Kwon SW	Int J Syst Evol Microbiol	10.1099/ijsem.0.002104	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43441

Soo-Jin Kim, Hayoung Cho, Jae-Hyung Ahn, Hang-Yeon Weon, Jae-Ho Joa, Seung-Beom Hong, Soon-Ja Seok, Jeong-Seon Kim, Soon-Wo Kwon: Terrimonas terrae sp. nov., isolated from the rhizosphere of a tomato plant. IJSEM 67: 3105 - 3110 2017 ( DOI 10.1099/ijsem.0.002104 , PubMed 28857731 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
* These data were automatically processed and therefore are not curated

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