Name: Flavobacterium fluminis 3R17
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 140676

Type strain:

Species: Flavobacterium fluminis

Strain Designation: 3R17

Culture col. no.: KCTC 42062, JCM 30338, CIP 111715

Strain history: CIP <- 2019, JCM <- 2014, S.B. Kim, Chungnam National Univ., South Korea: strain 3R17

NCBI tax ID(s): 1433257 (species)

SI-ID 413894

CIP 111715

Special Collections

Section

Flavobacterium fluminis 3R17 is an aerobe, chemoorganotroph, Gram-negative bacterium that forms circular colonies and was isolated from freshwater sample from the surface of the Keum River near Daejeon City.

colony-forming
Gram-negative
motile
rod-shaped
aerobe
chemoorganotroph
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Flavobacterium*
	Species	**Flavobacterium fluminis**
	Full Scientific Name (LPSN)	Flavobacterium fluminis Ahn et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43440]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative
[Ref.: #119406]	Gram stain	negative

[Ref.: #43440]	Cell length	1.0-1.5 µm

[Ref.: #43440]	Cell width	0.4-0.5 µm

[Ref.: #43440]	Cell shape	rod-shaped
[Ref.: #119406]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #43440]	Motility	yes
[Ref.: #119406]	Motility	no
[Ref.: #67771]	Motility	yes

[Ref.: #43440]	Flagellum arrangement	gliding

[Ref.: #43440]	Colony color	bright-yellow
[Ref.: #43440]	Colony shape	circular
[Ref.: #43440]	Incubation period	2 days
[Ref.: #43440]	Cultivation medium used	R2A agar

[Ref.: #43440]	Pigment production	no
[Ref.: #43440]	Pigment name	Flexirubin-type

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43440]

Culture medium

BHI

[Ref.: #43440]

Culture medium growth

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Culture medium

Nutrient agar (NA)

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Culture medium growth

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Culture medium

PDA

[Ref.: #43440]

Culture medium growth

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Culture medium

Reasoner's 2A agar (R2A)

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Culture medium growth

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Culture medium

Trypticase Soy Agar (TSA)

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Culture medium growth

[Ref.: #119406]

Culture medium

CIP Medium 566

[Ref.: #119406]

Culture medium growth

[Ref.: #119406]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #43440]	growth	4-30 °C
[Ref.: #43440]	optimum	25 °C
[Ref.: #67770]	growth	30 °C
[Ref.: #67771]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #43440]			optimum	7
[Ref.: #43440]			growth	6-9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43440]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #43440]

Nutrition type

chemoorganotroph

[Ref.: #43440]

Halophily / tolerance level

non-halophilic

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43440]		NaCl		growth	0-3	%
[Ref.: #43440]		NaCl		optimum	0	%

[Ref.: #67770]	Observation	quinones: MK-6
[Ref.: #67771]	Observation	quinones: MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43440]	acetate ChEBI	+	carbon source
[Ref.: #43440]	alpha-cyclodextrin ChEBI	+	carbon source
[Ref.: #43440]	alpha-D-glucose ChEBI	+	carbon source
[Ref.: #43440]	arginine ChEBI	-	hydrolysis
[Ref.: #43440]	carboxymethylcellulose ChEBI	-	hydrolysis
[Ref.: #43440]	casein	-	hydrolysis
[Ref.: #43440]	cellobiose ChEBI	+	carbon source
[Ref.: #43440]	D-fructose ChEBI	+	carbon source
[Ref.: #43440]	D-galactose ChEBI	+	carbon source
[Ref.: #43440]	D-galacturonic acid ChEBI	+	carbon source
[Ref.: #43440]	D-glucose ChEBI	+	assimilation
[Ref.: #43440]	D-mannose ChEBI	+	assimilation
[Ref.: #43440]	D-mannose ChEBI	+	carbon source
[Ref.: #43440]	dextrin ChEBI	+	carbon source
[Ref.: #43440]	dna ChEBI	-	hydrolysis
[Ref.: #43440]	esculin ChEBI	+	hydrolysis
[Ref.: #43440]	gelatin ChEBI	+	hydrolysis
[Ref.: #43440]	gentiobiose ChEBI	+	carbon source
[Ref.: #43440]	glycerol ChEBI	+	carbon source
[Ref.: #43440]	glycogen ChEBI	+	carbon source
[Ref.: #43440]	glycyl L-aspartic acid ChEBI	+	carbon source
[Ref.: #43440]	glycyl-l-glutamate ChEBI	+	carbon source
[Ref.: #43440]	L-arabinose ChEBI	+	assimilation
[Ref.: #43440]	L-asparagine ChEBI	+	carbon source
[Ref.: #43440]	L-aspartate ChEBI	+	carbon source
[Ref.: #43440]	L-glutamate ChEBI	+	carbon source
[Ref.: #43440]	L-serine ChEBI	+	carbon source
[Ref.: #43440]	L-threonine ChEBI	+	carbon source
[Ref.: #43440]	lactose ChEBI	+	carbon source
[Ref.: #43440]	lactulose ChEBI	+	carbon source
[Ref.: #43440]	maltose ChEBI	-	assimilation
[Ref.: #43440]	maltose ChEBI	+	carbon source
[Ref.: #43440]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #43440]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #43440]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #43440]	nitrate ChEBI	+	reduction
[Ref.: #43440]	starch ChEBI	-	hydrolysis
[Ref.: #43440]	succinate ChEBI	+	carbon source
[Ref.: #43440]	turanose ChEBI	+	carbon source
[Ref.: #43440]	tween 40 ChEBI	+	carbon source
[Ref.: #43440]	tween 80 ChEBI	-	hydrolysis
[Ref.: #43440]	tween 80 ChEBI	+	carbon source
[Ref.: #43440]	tyrosine ChEBI	-	hydrolysis
[Ref.: #43440]	urea ChEBI	-	hydrolysis
[Ref.: #43440]	uridine ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #43440]	2-nitrophenyl beta-D-galactopyranoside	+	3.2.1.52
[Ref.: #43440]	acid phosphatase	+	3.1.3.2
[Ref.: #43440]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43440]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43440]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43440]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43440]	alpha-mannosidase	+	3.2.1.24
[Ref.: #43440]	beta-galactosidase	+	3.2.1.23
[Ref.: #43440]	beta-glucosidase	-	3.2.1.21
[Ref.: #43440]	catalase	+	1.11.1.6
[Ref.: #43440]	cystine arylamidase	+	3.4.11.3
[Ref.: #43440]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43440]	esterase (C 4)	+
[Ref.: #43440]	esterase Lipase (C 8)	+
[Ref.: #43440]	leucine arylamidase	+	3.4.11.1
[Ref.: #43440]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #43440]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43440]	trypsin	+	3.4.21.4
[Ref.: #43440]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43440]

Fatty acid	Percentage
C16:1ω7c / C16:1ω6c	35.8
C15:0 iso	15.9
C15:0 anteiso	7.8
C15:1 iso G	7.4
C16:0	7
C17:0 iso 3OH	5.5
C15:0 iso 3OH	5.2
C16:0 3OH	4.4
C14:0	2.1
C15:1ω6c	2
C17:1ω6c	2
10-methyl C16:0 / iso-C17:1ω9c	1.9
C15:0 2OH	1.6
C12:0ALDE / ECL 10.928	1.4

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43440]	Sample type/isolated from	freshwater sample from the surface of the Keum River near Daejeon City
[Ref.: #43440]	Geographic location (country and/or sea, region)	Daejeon City
[Ref.: #43440]	Country	Republic of Korea
[Ref.: #43440]	Country ISO 3 Code	KOR
[Ref.: #43440]	Continent	Asia
[Ref.: #43440]	Geographic location	36.7840°/127.6760°

[Ref.: #67770]	Sample type/isolated from	Freshwater from the surface of the Keum River near Daejeon
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From freshwater, the surface of the Keum River near Daejeon City
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia

[Ref.: #119406]	Sample type/isolated from	Environment, Freshwater
[Ref.: #119406]	Geographic location (country and/or sea, region)	Daejeon, Keum river
[Ref.: #119406]	Country	Republic of Korea
[Ref.: #119406]	Country ISO 3 Code	KOR
[Ref.: #119406]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#River (Creek)
#Environmental	#Aquatic	#Surface water

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #119406]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43440]	Flavobacterium fluminis strain 3R17 16S ribosomal RNA gene, partial sequence	KF891387		GenBank ENA

[Ref.: #43440]	GC-content	35.4 mol%	Thermal denaturation, fluorometry
[Ref.: #67770]	GC-content	35.4 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67771]	GC-content	35.4 mol%

Availability in culture collections External links

[Ref.: #43440]

Culture collection no.

KCTC 42062, JCM 30338, CIP 111715

[Ref.: #96776]

SI-ID 413894

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Flavobacterium fluminis sp. nov. to accommodate an aerobic, halotolerant and gliding flavobacterium isolated from freshwater.	Ahn JH, Kim TW, Kim TS, Joung Y, Kim SB	Int J Syst Evol Microbiol	10.1099/ijsem.0.002135	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43440

Joong-Hyeon Ahn, Tae Woon Kim, Tae-Su Kim, Yochan Joung, Seung Bum Kim: Flavobacterium fluminis sp. nov. to accommodate an aerobic, halotolerant and gliding flavobacterium isolated from freshwater. IJSEM 67: 3117 - 3121 2017 ( DOI 10.1099/ijsem.0.002135 , PubMed 28771125 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#96776

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID413894.1 )

#119406 Collection of Institut Pasteur ; Curators of the CIP; CIP 111715
* These data were automatically processed and therefore are not curated

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