Name: Mycobacterium stephanolepidis NJB0901
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140668

Type strain:

Species: Mycobacterium stephanolepidis

Strain Designation: NJB0901

Culture col. no.: JCM 31611, KCTC 39843, DSM 109040

Strain history: <- Hanako Fukano, Nippon Veterinary and Life Science Univ.

NCBI tax ID(s): 1520670 (species)

SI-ID 406495

DSM 109040

Section

Mycobacterium stephanolepidis NJB0901 is an aerobe, mesophilic, rod-shaped bacterium that was isolated from threadsail filefish .

rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Mycobacteriaceae*
	Genus	*Mycobacterium*
	Species	**Mycobacterium stephanolepidis**
	Full Scientific Name (LPSN)	Mycobacterium stephanolepidis Fukano et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43431]	Cell shape	rod-shaped

[Ref.: #43431]	Colony color	mom-pigmented, rough
[Ref.: #43431]	Cultivation medium used	Middlebrook 7H11 agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43431]

Culture medium

Middlebrook 7H11 agar

[Ref.: #43431]

Culture medium growth

[Ref.: #64865]

Culture medium

MIDDLEBROOK MEDIUM (DSMZ Medium 645)

[Ref.: #64865]

Culture medium growth

[Ref.: #64865]

Culture medium link

Medium recipe at MediaDive

[Ref.: #64865]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #43431]	growth	30 °C
[Ref.: #64865]	growth	30 °C
[Ref.: #67770]	growth	25 °C
[Ref.: #67771]	growth	25-30 °C

[Ref.: #43431]	Temperature range	mesophilic
[Ref.: #64865]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43431]		NaCl	no	growth	5	%

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43431]		nitrate ChEBI	-	reduction
[Ref.: #43431]		tween 80 ChEBI	-	hydrolysis

	Metabolite	Antibiotic sensitivity	Concentration
[Ref.: #43431]	ciprofloxacin ChEBI	yes	0.5-1	µg/mL
[Ref.: #43431]	clarithromycin ChEBI	yes	0.25	µg/mL
[Ref.: #43431]	doxycycline ChEBI	yes	1	µg/mL

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #43431]		urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43431]	Sample type/isolated from	threadsail filefish (Stephanolepis cirrhifer)

[Ref.: #64865]	Sample type/isolated from	Thread-sail filefish Stephanolepis cirrhifer
[Ref.: #64865]	Country	Japan
[Ref.: #64865]	Country ISO 3 Code	JPN
[Ref.: #64865]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Thread-sail filefish (Stephanolepis cirrhifer)
[Ref.: #67770]	Host species	Stephanolepis cirrhifer
[Ref.: #67770]	Geographic location (country and/or sea, region)	Ehime Pref.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From thread-sail filefish(Stephanolepis cirrhifer)
[Ref.: #67771]	Geographic location (country and/or sea, region)	Ehime
[Ref.: #67771]	Country	Japan
[Ref.: #67771]	Country ISO 3 Code	JPN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Host	#Fishes	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB971866 (>99% sequence identity) for Mycobacteroides from Microbeatlas

Aquatic Samples	6199
Soil Samples	7046
Animal Samples	7007
Plant Samples	1742
Total Samples	21994

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #64865]	Mycobacterium stephanolepidis gene for 16S ribosomal RNA, partial sequence	AB971866	1467	ENA	1520670 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	[Mycobacterium] stephanolepidis NJB0901	GCA_002356335	complete	GenBank	1520670 tax ID
[Ref.: #66792]	Mycobacterium stephanolepidis NJB0901	2775507227	complete	JGI IMG/M	1520670 tax ID	*

Availability in culture collections External links

[Ref.: #64865]

Culture collection no.

JCM 31611, KCTC 39843, DSM 109040

[Ref.: #96772]

SI-ID 406495

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Mycobacterium stephanolepidis sp. nov., a rapidly growing species related to Mycobacterium chelonae, isolated from marine teleost fish, Stephanolepis cirrhifer.	Fukano H, Wada S, Kurata O, Katayama K, Fujiwara N, Hoshino Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.002028	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43431

Hanako Fukano, Shinpei Wada, Osamu Kurata, Kinya Katayama, Nagatoshi Fujiwara, Yoshihiko Hoshino: Mycobacterium stephanolepidis sp. nov., a rapidly growing species related to Mycobacterium chelonae, isolated from marine teleost fish, Stephanolepis cirrhifer. IJSEM 67: 2811 - 2817 2017 ( DOI 10.1099/ijsem.0.002028 , PubMed 28857733 )

#64865

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 109040

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#96772

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID406495.1 )

* These data were automatically processed and therefore are not curated

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