Name: Heyndrickxia coagulans 36D1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 140654

Type strain:

Species: Heyndrickxia coagulans

Strain Designation: 36D1

Culture col. no.: ATCC 5827

NCBI tax ID(s): 1398 (species)

Special Collections

Literature strains

Other strains from Heyndrickxia coagulans

When using BacDive for research please cite our paper

Heyndrickxia coagulans 36D1 is a bacterium of the family Bacillaceae.

Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Heyndrickxia*
	Species	**Heyndrickxia coagulans**
	Full Scientific Name (LPSN)	Heyndrickxia coagulans (Hammer 1915) Narsing Rao et al. 2023

	Synonym	Bacillus coagulans
	Synonym	Weizmannia coagulans

Information on physiology and metabolism Physiology and metabolism

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43419]		cellulose ChEBI	-	degradation
[Ref.: #43419]		xylan ChEBI	-	degradation

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Weizmannia coagulans 36D1	2503242012	complete	JGI IMG/M	345219 tax ID	*
[Ref.: #66792]	Heyndrickxia coagulans 36D1	GCA_000169195	complete	GenBank ENA	345219 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Weizmannia coagulans 36D1 36D1 NCBI: GCA_000169195.2
[Ref.: #125438]	gram-positive	gram-positiveⓘ	yes	78.485	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	89.746	no
[Ref.: #125438]	aerobic	aerobicⓘ	yes	61.463	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	yes	89.758	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	81.149	no
[Ref.: #125438]	motile2+	flagellatedⓘ	yes	78.446	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Weizmannia coagulans 36D1 IMG: 2503242012
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	57
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	55
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	variable	64.2
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	anaerobe	75

Availability in culture collections External links

[Ref.: #43419]

Culture collection no.

ATCC 5827

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43419

Mun Su Rhee, Brélan E. Moritz, Gary Xie, T. Glavina del Rio, E. Dalin, H. Tice, D. Bruce, L. Goodwin, O. Chertkov, T. Brettin, C. Han, C. Detter, S. Pitluck, Miriam L. Land, Milind Patel, Mark Ou, Roberta Harbrucker, Lonnie O. Ingram and K. T. Shanmugam: Complete Genome Sequence of a thermotolerant sporogenic lactic acid bacterium, Bacillus coagulans strain 36D1. Stand Genomic Sci 5: 331 - 340 2011 ( DOI 10.4056/sigs.2365342 , PubMed 22675583 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Weizmannia coagulans 36D1 36D1

Weizmannia coagulans 36D1

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