Name: Arcticibacter svalbardensis MN12-7
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 140651

Type strain:

Species: Arcticibacter svalbardensis

Strain Designation: MN12-7

Culture col. no.: KCTC 32015, CIP 110422

Strain history: CIP <- 2012, S. Shivaji, CCMB, Hyderabad, India, strain MN12-7

NCBI tax ID(s): 1288027 (species)

SI-ID 388294

CIP 110422, KCTC 32015, CCUG 62540

Special Collections

Other strains from Arcticibacter svalbardensis

Section

Arcticibacter svalbardensis MN12-7 is an aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from surface soil from Ny-Alesund, Svaldbard.

colony-forming
Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacteroidota*
	Class	*Sphingobacteriia*
	Order	*Sphingobacteriales*
	Family	*Sphingobacteriaceae*
	Genus	*Arcticibacter*
	Species	**Arcticibacter svalbardensis**
	Full Scientific Name (LPSN)	Arcticibacter svalbardensis Prasad et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #27122]	Gram stain	negative
[Ref.: #123394]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %96.709

[Ref.: #27122]	Cell length	3.9 µm

[Ref.: #27122]	Cell width	1.75 µm

[Ref.: #27122]	Cell shape	rod-shaped
[Ref.: #123394]	Cell shape	rod-shaped

[Ref.: #27122]	Motility	no
[Ref.: #123394]	Motility	no

[Ref.: #27122]	Colony size	1 mm
[Ref.: #27122]	Colony color	light salmon pink
[Ref.: #27122]	Colony shape	circular
[Ref.: #27122]	Cultivation medium used	nutrient agar (Difco)

[Ref.: #27122]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #37320]

Culture medium

MEDIUM 566- Reasoner's 2A agar for Flavobacterium micromati

[Ref.: #37320]

Culture medium growth

[Ref.: #37320]

Culture medium composition

expand / minimize

[Ref.: #27122]

Culture medium

nutrient agar (Difco)

[Ref.: #27122]

Culture medium growth

[Ref.: #123394]

Culture medium

CIP Medium 735

[Ref.: #123394]

Culture medium growth

[Ref.: #123394]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #123394]

Culture medium

CIP Medium 328

[Ref.: #123394]

Culture medium growth

[Ref.: #123394]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #123394]

Culture medium

CIP Medium 566

[Ref.: #123394]

Culture medium growth

[Ref.: #123394]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #27122]	optimum	18 °C
[Ref.: #27122]	growth	4-25 °C
[Ref.: #37320]	growth	25 °C

	pH	Kind of pH		pH
[Ref.: #27122]			optimum	7
[Ref.: #27122]			growth	7-8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #27122]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #27122]		NaCl		growth	0-2	M
[Ref.: #27122]		NaCl		optimum	0.5-1	M

[Ref.: #27122]

Observation

aggregates in clumps

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #27122]	arabinose ChEBI	-	assimilation
[Ref.: #27122]	casein	-	hydrolysis
[Ref.: #27122]	cellobiose ChEBI	+	assimilation
[Ref.: #27122]	cellulose ChEBI	+	hydrolysis
[Ref.: #27122]	chitin ChEBI	-	hydrolysis
[Ref.: #27122]	citrate ChEBI	-	builds acid from
[Ref.: #27122]	creatinine ChEBI	-	builds acid from
[Ref.: #27122]	D-fructose ChEBI	-	builds acid from
[Ref.: #27122]	D-mannitol ChEBI	-	builds acid from
[Ref.: #27122]	D-mannose ChEBI	-	builds acid from
[Ref.: #27122]	D-xylose ChEBI	-	builds acid from
[Ref.: #27122]	dna ChEBI	-	hydrolysis
[Ref.: #27122]	erythritol ChEBI	-	builds acid from
[Ref.: #27122]	esculin ChEBI	+	hydrolysis
[Ref.: #27122]	fructose ChEBI	-	assimilation
[Ref.: #27122]	galactitol ChEBI	-	assimilation
[Ref.: #27122]	galactose ChEBI	+	assimilation
[Ref.: #27122]	gelatin ChEBI	-	hydrolysis
[Ref.: #27122]	glucosamine ChEBI	-	assimilation
[Ref.: #27122]	glucose ChEBI	+	fermentation
[Ref.: #27122]	glucose ChEBI	+	assimilation
[Ref.: #27122]	glycerol ChEBI	-	assimilation
[Ref.: #27122]	glycogen ChEBI	-	builds acid from
[Ref.: #27122]	heparin ChEBI	-	hydrolysis
[Ref.: #27122]	inulin ChEBI	-	assimilation
[Ref.: #27122]	L-arabinose ChEBI	-	builds acid from
[Ref.: #27122]	lactose ChEBI	-	assimilation
[Ref.: #27122]	maltose ChEBI	+	assimilation
[Ref.: #27122]	mannitol ChEBI	-	assimilation
[Ref.: #27122]	mannose ChEBI	+	assimilation
[Ref.: #27122]	melezitose ChEBI	-	assimilation
[Ref.: #27122]	melibiose ChEBI	+	assimilation
[Ref.: #27122]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from
[Ref.: #27122]	methyl alpha-D-glucopyranoside ChEBI	-	assimilation
[Ref.: #27122]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #27122]	methyl alpha-D-mannoside ChEBI	-	assimilation
[Ref.: #27122]	myo-inositol ChEBI	-	builds acid from
[Ref.: #27122]	myo-inositol ChEBI	-	assimilation
[Ref.: #27122]	nitrate ChEBI	-	reduction
[Ref.: #27122]	O-nitrophenyl-beta-D-galactopyranosid	-	assimilation
[Ref.: #27122]	ornithine ChEBI	-	builds acid from
[Ref.: #27122]	pectin ChEBI	-	hydrolysis
[Ref.: #27122]	pyruvate ChEBI	-	builds acid from
[Ref.: #27122]	raffinose ChEBI	-	builds acid from
[Ref.: #27122]	raffinose ChEBI	-	assimilation
[Ref.: #27122]	rhamnose ChEBI	-	builds acid from
[Ref.: #27122]	ribitol ChEBI	-	builds acid from
[Ref.: #27122]	ribitol ChEBI	-	assimilation
[Ref.: #27122]	ribose ChEBI	-	assimilation
[Ref.: #27122]	salicin ChEBI	-	assimilation
[Ref.: #27122]	sodium gluconate ChEBI	-	builds acid from
[Ref.: #27122]	sodium gluconate ChEBI	-	assimilation
[Ref.: #27122]	sorbitol ChEBI	-	assimilation
[Ref.: #27122]	sorbose ChEBI	-	builds acid from
[Ref.: #27122]	sorbose ChEBI	-	assimilation
[Ref.: #27122]	starch ChEBI	-	hydrolysis
[Ref.: #27122]	starch ChEBI	-	builds acid from
[Ref.: #27122]	sucrose ChEBI	-	assimilation
[Ref.: #27122]	trehalose ChEBI	+	assimilation
[Ref.: #27122]	tween 80 ChEBI	-	hydrolysis
[Ref.: #27122]	xylitol ChEBI	-	assimilation
[Ref.: #27122]	xylose ChEBI	-	assimilation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #27122]	amikacin ChEBI				yes	30	µg (disc)
[Ref.: #27122]	ampicillin ChEBI	yes	10	µg (disc)
[Ref.: #27122]	cefazolin ChEBI				yes	30	µg (disc)
[Ref.: #27122]	cefoperazone ChEBI	yes	75	µg (disc)
[Ref.: #27122]	cefotaxime ChEBI	yes	30	µg (disc)
[Ref.: #27122]	cefuroxime ChEBI	yes	30	µg (disc)
[Ref.: #27122]	chloramphenicol ChEBI	yes	30	µg (disc)
[Ref.: #27122]	ciprofloxacin ChEBI	yes	5	µg (disc)
[Ref.: #27122]	colistin ChEBI	yes	10	µg (disc)
[Ref.: #27122]	erythromycin ChEBI	yes	15	µg (disc)
[Ref.: #27122]	kanamycin ChEBI				yes	30	µg (disc)
[Ref.: #27122]	lincomycin ChEBI	yes	2	µg (disc)
[Ref.: #27122]	lomefloxacin ChEBI	yes	30	µg (disc)
[Ref.: #27122]	nalidixic acid ChEBI				yes	30	µg (disc)
[Ref.: #27122]	nitrofurantoin ChEBI	yes	300	µg (disc)
[Ref.: #27122]	penicillin g ChEBI	yes	10	µg (disc)
[Ref.: #27122]	roxithromycin ChEBI	yes	30	µg (disc)
[Ref.: #27122]	streptomycin ChEBI				yes	10	µg (disc)
[Ref.: #27122]	tetracycline ChEBI	yes	30	µg (disc)
[Ref.: #27122]	tobramycin ChEBI				yes	10	µg (disc)
[Ref.: #27122]	vancomycin ChEBI	yes	30	µg (disc)
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #27122]		acetoin ChEBI	no
[Ref.: #27122]		hydrogen sulfide ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #27122]		acetoin ChEBI	-
[Ref.: #27122]		glucose ChEBI		+

	Enzyme	Enzyme activity	EC number
[Ref.: #27122]	arginine dihydrolase	-	3.5.3.6
[Ref.: #27122]	beta-galactosidase	-	3.2.1.23
[Ref.: #27122]	catalase	+	1.11.1.6
[Ref.: #27122]	cytochrome oxidase	+	1.9.3.1
[Ref.: #27122]	lysine decarboxylase	-	4.1.1.18
[Ref.: #27122]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #27122]	tryptophan deaminase	-	4.1.99.1
[Ref.: #27122]	urease	-	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #27122]	Sample type/isolated from	surface soil from Ny-Alesund, Svaldbard
[Ref.: #27122]	Geographic location (country and/or sea, region)	Svalbard
[Ref.: #27122]	Country	Norway
[Ref.: #27122]	Country ISO 3 Code	NOR
[Ref.: #27122]	Continent	Europe

[Ref.: #123394]	Sample type/isolated from	Environment, Soil surface associated with dried vegetation
[Ref.: #123394]	Geographic location (country and/or sea, region)	Ny Alesund, Spitzberg
[Ref.: #123394]	Country	Norway
[Ref.: #123394]	Country ISO 3 Code	NOR
[Ref.: #123394]	Continent	Europe
[Ref.: #123394]	Isolation date	2010
* marker position based on {}

Isolation sources categories

#Climate	#Cold	#Subarctic
#Environmental	#Terrestrial	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JQ396621 (>99% sequence identity) for Arcticibacter svalbardensis from Microbeatlas

Aquatic Samples	9
Soil Samples	12
Animal Samples	13
Plant Samples	2
Total Samples	36

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #123394]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #27122]	Arcticibacter svalbardensis MN12-7 16S ribosomal RNA gene, partial sequence	JQ396621	1499	GenBank ENA	1150600 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Arcticibacter svalbardensis MN12-7	GCA_000403135	contig	GenBank ENA	1150600 tax ID	*
[Ref.: #66792]	Arcticibacter svalbardensis MN12-7	1150600.3	wgs	PATRIC	1150600 tax ID	*
[Ref.: #66792]	Arcticibacter svalbardensis MN12-7	2541047992	draft	JGI IMG/M	1150600 tax ID	*

[Ref.: #27122]

GC-content

38 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Arcticibacter svalbardensis MN12-7 PATRIC: 1150600.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	96.709	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	95.791	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	89.333	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	61.38	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97.633	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	83	no

Availability in culture collections External links

[Ref.: #27122]

Culture collection no.

KCTC 32015, CIP 110422

[Ref.: #96767]

SI-ID 388294

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Draft Genome Sequence of Arcticibacter svalbardensis Strain MN12-7T, a Member of the Family Sphingobacteriaceae Isolated from an Arctic Soil Sample.	Shivaji S, Ara S, Prasad S, Manasa BP, Begum Z, Singh A, Kumar Pinnaka A	Genome Announc	10.1128/genomeA.00484-13	2013	*
Phylogeny	Arcticibacter svalbardensis gen. nov., sp. nov., of the family Sphingobacteriaceae in the phylum Bacteroidetes, isolated from Arctic soil.	Prasad S, Manasa BP, Buddhi S, Pratibha MS, Begum Z, Bandi S, Tirunagari P, Shivaji S	Int J Syst Evol Microbiol	10.1099/ijs.0.044420-0	2012	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#27122

IJSEM 1627 2013 ( DOI 10.1099/ijs.0.044420-0 , PubMed 22904219 )

#37320 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#96767

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID388294.1 )

#123394 Collection of Institut Pasteur ; Curators of the CIP; CIP 110422
* These data were automatically processed and therefore are not curated

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