Natrinema soli (IBRC-M 11063, LMG 29247, 5-3)

Name: Natrinema soli (IBRC-M 11063, LMG 29247, 5-3)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140647

Type strain

Strain Designation 5-3

Culture col. no. IBRC-M 11063 LMG 29247 5-3

NCBI tax ID(s) 1930624

Special Collections Literature strains

Links

Natrinema soli 5-3 is an obligate aerobe, thermophilic, Gram-negative prokaryote that was isolated from soil samples.

Gram-negative ovoid-shaped obligate aerobe thermophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 272173

LMG 29247

@ref 20215

Last LPSN update 2025-12-16 10:03:39

Domain Methanobacteriati

Phylum Methanobacteriota

Class Halobacteria

Order Halobacteriales

Family Natrialbaceae

Genus Natrinema

Species Natrinema soli

Full scientific name Natrinema soli Rasooli et al. 2017

Morphology

Cell morphology

@ref	Gram stain	Cell width	Cell shape	Motility
43288	negative	1.2-1.6 µm	ovoid-shaped

Colony morphology

@ref	Colony size	Colony color
43288	1.5 mm	cream-coloured

Culture and growth conditions

Culture medium

@ref	Name	Growth
43288	NOM medium

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
43288	positive	optimum	40	thermophilic
43288	positive	growth	25-45

Culture pH

@ref	Ability	Type	PH
43288	positive	optimum	7
43288	positive	growth	6.0-8.0

Physiology and metabolism

Oxygen tolerance

43288

Oxygen toleranceobligate aerobe

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43288	NaCl	positive	growth	3.0-4.5 M
43288	NaCl	positive	optimum	4 M
43288	MgSO4x7H2O	positive	growth	0-0.4 M
43288	MgSO4x7H2O	positive	optimum	0.08-0.2 M

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43288	35391 ChEBI	aspartate	-	carbon source
43288		casein	-	hydrolysis
43288	17057 ChEBI	cellobiose	+	carbon source
43288	17108 ChEBI	D-arabinose	-	carbon source
43288	18333 ChEBI	D-arabitol	-	carbon source
43288	12936 ChEBI	D-galactose	+	carbon source
43288	8391 ChEBI	D-gluconate	+	carbon source
43288	17634 ChEBI	D-glucose	+	carbon source
43288	15748 ChEBI	D-glucuronate	-	carbon source
43288	16899 ChEBI	D-mannitol	-	carbon source
43288	16024 ChEBI	D-mannose	-	carbon source
43288	16988 ChEBI	D-ribose	-	carbon source
43288	65327 ChEBI	D-xylose	-	carbon source
43288	28262 ChEBI	dimethyl sulfoxide	-	growth
43288	16991 ChEBI	dna	-	degradation
43288	4853 ChEBI	esculin	+	hydrolysis
43288	5291 ChEBI	gelatin	-	hydrolysis
43288	29987 ChEBI	glutamate	-	carbon source
43288	28300 ChEBI	glutamine	+	carbon source
43288	15428 ChEBI	glycine	-	carbon source
43288	16977 ChEBI	L-alanine	-	carbon source
43288	30849 ChEBI	L-arabinose	+	carbon source
43288	16467 ChEBI	L-arginine	-	growth
43288	16467 ChEBI	L-arginine	-	carbon source
43288	17196 ChEBI	L-asparagine	-	carbon source
43288	15971 ChEBI	L-histidine	-	carbon source
43288	15603 ChEBI	L-leucine	+	carbon source
43288	18019 ChEBI	L-lysine	-	carbon source
43288	15729 ChEBI	L-ornithine	-	carbon source
43288	17295 ChEBI	L-phenylalanine	-	carbon source
43288	62345 ChEBI	L-rhamnose	-	carbon source
43288	17115 ChEBI	L-serine	-	carbon source
43288	17716 ChEBI	lactose	-	carbon source
43288	17306 ChEBI	maltose	+	carbon source
43288	28053 ChEBI	melibiose	-	carbon source
43288	16811 ChEBI	methionine	-	carbon source
43288	17268 ChEBI	myo-inositol	-	carbon source
43288	17632 ChEBI	nitrate	-	reduction
43288	26271 ChEBI	proline	+	carbon source
43288	16634 ChEBI	raffinose	+	carbon source
43288	66870 ChEBI	sodium dithionite	-	growth
43288	132112 ChEBI	sodium thiosulfate	-	growth
43288	30911 ChEBI	sorbitol	-	carbon source
43288	28017 ChEBI	starch	-	hydrolysis
43288	17992 ChEBI	sucrose	-	carbon source
43288	26986 ChEBI	threonine	+	carbon source
43288	27082 ChEBI	trehalose	-	carbon source
43288	53424 ChEBI	tween 20	+	hydrolysis
43288	53425 ChEBI	tween 60	+	hydrolysis
43288	53426 ChEBI	tween 80	+	hydrolysis
43288	17151 ChEBI	xylitol	-	carbon source

Antibiotic resistance

@ref	ChEBI	Metabolite	Resistance conc.	Sensitivity conc.
43288	28971	ampicillin	10 µg
43288	28669	bacitracin	0.04 Unit
43288	17698	chloramphenicol	30 µg
43288	48923	erythromycin	15 µg
43288	17833	gentamicin	10 µg
43288	6104	kanamycin	30 µg
43288	100147	nalidixic acid	30 µg
43288	7507	neomycin	30 µg
43288	71415	nitrofurantoin		300 µg
43288	28368	novobiocin		30 µg
43288	18208	penicillin g	10 Unit
43288	17876	rifamycin b		5 µg
43288	27902	tetracycline	30 µg

Metabolite production

@ref	Chebi-ID	Metabolite	Production
43288	16136 ChEBI	hydrogen sulfide
43288	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
43288	arginine dihydrolase	-	3.5.3.6
43288	catalase	+	1.11.1.6
43288	cytochrome oxidase	-	1.9.3.1
43288	lysine decarboxylase	-	4.1.1.18
43288	ornithine decarboxylase	-	4.1.1.17

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
43288	soil samples	2013-06	Meighan wetland, Arak, Iran	Iran	IRN	Asia	34	49 34/49

Taxonmaps

69479

Global distribution of 16S sequence KY381123 (>99% sequence identity) for Natrinema soli subclade from Microbeatlas

Aquatic Samples	20
Soil Samples	23
Animal Samples	1
Plant Samples
Total Samples	44

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID
124043	ASM2861869v1 assembly for Natrinema soli LMG 29247	scaffold	GCA_028618695	1930624
124043	ASM4266176v1 assembly for Natrinema soli LMG 29247	scaffold	GCA_042661765	1930624

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
43288	Natrinema soli strain 5-3 16S ribosomal RNA gene, partial sequence	KY381123	1472		1917451

GC content

@ref	GC-content (mol%)	Method
43288	61.5	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
	International Committee on Systematics of Prokaryotes Subcommittee on the taxonomy of Halobacteria and Subcommittee on the taxonomy of Halomonadaceae. Minutes of the joint open meeting, 11 July 2017, Valencia, Spain.	Arahal DR, Oren A, Ventosa A.	Int J Syst Evol Microbiol	10.1099/ijsem.0.002296	2017
Phylogeny	Natrinema soli sp. nov., a novel halophilic archaeon isolated from a hypersaline wetland.	Rasooli M, Naghoni A, Amoozegar MA, Mirfeizi L, Moshtaghi Nikou M, Shahzadeh Fazeli SA, Minegishi H, Ventosa A	Int J Syst Evol Microbiol	10.1099/ijsem.0.001909	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43288	Mehrnoosh Rasooli, Ali Naghoni, Mohammad Ali Amoozegar, Leila Mirfeizi, Mahdi Moshtaghi Nikou, Seyed Abolhassan Shahzadeh Fazeli, Hiroaki Minegishi and Antonio Ventosa: Natrinema soli sp. nov., a novel halophilic archaeon isolated from a hypersaline wetland. IJSEM 67: 2142 - 2147 2017 ( DOI 10.1099/ijsem.0.001909 , PubMed 28650314 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Natrinema soli (IBRC-M 11063, LMG 29247, 5-3)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Halophily

Metabolite utilization

Antibiotic resistance

Metabolite production

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_028618695

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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