Name: Natrinema soli 5-3
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 140647

Type strain:

Species: Natrinema soli

Strain Designation: 5-3

Culture col. no.: IBRC-M 11063, LMG 29247

NCBI tax ID(s): 1930624 (species)

Special Collections

Literature strains

Section

Natrinema soli 5-3 is an obligate aerobe, thermophilic, Gram-negative archaeon that was isolated from soil samples.

Gram-negative
ovoid-shaped
obligate aerobe
thermophilic
16S sequence
Archaea

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Archaea*
	Phylum	*Methanobacteriota*
	Class	*Halobacteria*
	Order	*Halobacteriales*
	Family	*Natrialbaceae*
	Genus	*Natrinema*
	Species	**Natrinema soli**
	Full Scientific Name (LPSN)	Natrinema soli Rasooli et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43288]	Gram stain	negative

[Ref.: #43288]	Cell width	1.2-1.6 µm

[Ref.: #43288]	Cell shape	ovoid-shaped

[Ref.: #43288]	Motility	no

[Ref.: #43288]	Colony size	1.5 mm
[Ref.: #43288]	Colony color	cream-coloured

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43288]

Culture medium

NOM medium

[Ref.: #43288]

Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #43288]			optimum	40 °C
[Ref.: #43288]			growth	25-45 °C

	pH	Kind of pH		pH
[Ref.: #43288]			optimum	7
[Ref.: #43288]			growth	6.0-8.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43288]

Oxygen tolerance

obligate aerobe

	Salt		Salt conc.
[Ref.: #43288]	NaCl	growth	3.0-4.5	M
[Ref.: #43288]	NaCl	optimum	4	M
[Ref.: #43288]	MgSO4x7H2O	growth	0-0.4	M
[Ref.: #43288]	MgSO4x7H2O	optimum	0.08-0.2	M

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43288]	aspartate ChEBI	-	carbon source
[Ref.: #43288]	casein	-	hydrolysis
[Ref.: #43288]	cellobiose ChEBI	+	carbon source
[Ref.: #43288]	D-arabinose ChEBI	-	carbon source
[Ref.: #43288]	D-arabitol ChEBI	-	carbon source
[Ref.: #43288]	D-galactose ChEBI	+	carbon source
[Ref.: #43288]	D-gluconate ChEBI	+	carbon source
[Ref.: #43288]	D-glucose ChEBI	+	carbon source
[Ref.: #43288]	D-glucuronate ChEBI	-	carbon source
[Ref.: #43288]	D-mannitol ChEBI	-	carbon source
[Ref.: #43288]	D-mannose ChEBI	-	carbon source
[Ref.: #43288]	D-ribose ChEBI	-	carbon source
[Ref.: #43288]	D-xylose ChEBI	-	carbon source
[Ref.: #43288]	dimethyl sulfoxide ChEBI	-	growth
[Ref.: #43288]	dna ChEBI	-	degradation
[Ref.: #43288]	esculin ChEBI	+	hydrolysis
[Ref.: #43288]	gelatin ChEBI	-	hydrolysis
[Ref.: #43288]	glutamate ChEBI	-	carbon source
[Ref.: #43288]	glutamine ChEBI	+	carbon source
[Ref.: #43288]	glycine ChEBI	-	carbon source
[Ref.: #43288]	L-alanine ChEBI	-	carbon source
[Ref.: #43288]	L-arabinose ChEBI	+	carbon source
[Ref.: #43288]	L-arginine ChEBI	-	growth
[Ref.: #43288]	L-arginine ChEBI	-	carbon source
[Ref.: #43288]	L-asparagine ChEBI	-	carbon source
[Ref.: #43288]	L-histidine ChEBI	-	carbon source
[Ref.: #43288]	L-leucine ChEBI	+	carbon source
[Ref.: #43288]	L-lysine ChEBI	-	carbon source
[Ref.: #43288]	L-ornithine ChEBI	-	carbon source
[Ref.: #43288]	L-phenylalanine ChEBI	-	carbon source
[Ref.: #43288]	L-rhamnose ChEBI	-	carbon source
[Ref.: #43288]	L-serine ChEBI	-	carbon source
[Ref.: #43288]	lactose ChEBI	-	carbon source
[Ref.: #43288]	maltose ChEBI	+	carbon source
[Ref.: #43288]	melibiose ChEBI	-	carbon source
[Ref.: #43288]	methionine ChEBI	-	carbon source
[Ref.: #43288]	myo-inositol ChEBI	-	carbon source
[Ref.: #43288]	nitrate ChEBI	-	reduction
[Ref.: #43288]	proline ChEBI	+	carbon source
[Ref.: #43288]	raffinose ChEBI	+	carbon source
[Ref.: #43288]	sodium dithionite ChEBI	-	growth
[Ref.: #43288]	sodium thiosulfate ChEBI	-	growth
[Ref.: #43288]	sorbitol ChEBI	-	carbon source
[Ref.: #43288]	starch ChEBI	-	hydrolysis
[Ref.: #43288]	sucrose ChEBI	-	carbon source
[Ref.: #43288]	threonine ChEBI	+	carbon source
[Ref.: #43288]	trehalose ChEBI	-	carbon source
[Ref.: #43288]	tween 20 ChEBI	+	hydrolysis
[Ref.: #43288]	tween 60 ChEBI	+	hydrolysis
[Ref.: #43288]	tween 80 ChEBI	+	hydrolysis
[Ref.: #43288]	xylitol ChEBI	-	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #43288]	ampicillin ChEBI				yes	10	µg
[Ref.: #43288]	bacitracin ChEBI				yes	0.04	Unit
[Ref.: #43288]	chloramphenicol ChEBI				yes	30	µg
[Ref.: #43288]	erythromycin ChEBI				yes	15	µg
[Ref.: #43288]	gentamicin ChEBI				yes	10	µg
[Ref.: #43288]	kanamycin ChEBI				yes	30	µg
[Ref.: #43288]	nalidixic acid ChEBI				yes	30	µg
[Ref.: #43288]	neomycin ChEBI				yes	30	µg
[Ref.: #43288]	nitrofurantoin ChEBI	yes	300	µg
[Ref.: #43288]	novobiocin ChEBI	yes	30	µg
[Ref.: #43288]	penicillin g ChEBI				yes	10	Unit
[Ref.: #43288]	rifamycin b ChEBI	yes	5	µg
[Ref.: #43288]	tetracycline ChEBI				yes	30	µg
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43288]		hydrogen sulfide ChEBI	no
[Ref.: #43288]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43288]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43288]	catalase	+	1.11.1.6
[Ref.: #43288]	cytochrome oxidase	-	1.9.3.1
[Ref.: #43288]	lysine decarboxylase	-	4.1.1.18
[Ref.: #43288]	ornithine decarboxylase	-	4.1.1.17

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43288]	Sample type/isolated from	soil samples
[Ref.: #43288]	Sampling date	2013-06
[Ref.: #43288]	Geographic location (country and/or sea, region)	Meighan wetland, Arak, Iran
[Ref.: #43288]	Country	Iran
[Ref.: #43288]	Country ISO 3 Code	IRN
[Ref.: #43288]	Continent	Asia
[Ref.: #43288]	Geographic location	34.0000°/49.0000°
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KY381123 (>99% sequence identity) for Natrinema soli subclade from Microbeatlas

Aquatic Samples	20
Soil Samples	23
Animal Samples	1
Plant Samples
Total Samples	44

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43288]	Natrinema soli strain 5-3 16S ribosomal RNA gene, partial sequence	KY381123	1472	GenBank ENA	1917451 tax ID

[Ref.: #43288]

GC-content

61.5 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #43288]

Culture collection no.

IBRC-M 11063, LMG 29247

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Natrinema soli sp. nov., a novel halophilic archaeon isolated from a hypersaline wetland.	Rasooli M, Naghoni A, Amoozegar MA, Mirfeizi L, Moshtaghi Nikou M, Shahzadeh Fazeli SA, Minegishi H, Ventosa A	Int J Syst Evol Microbiol	10.1099/ijsem.0.001909	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43288

Mehrnoosh Rasooli, Ali Naghoni, Mohammad Ali Amoozegar, Leila Mirfeizi, Mahdi Moshtaghi Nikou, Seyed Abolhassan Shahzadeh Fazeli, Hiroaki Minegishi and Antonio Ventosa: Natrinema soli sp. nov., a novel halophilic archaeon isolated from a hypersaline wetland. IJSEM 67: 2142 - 2147 2017 ( DOI 10.1099/ijsem.0.001909 , PubMed 28650314 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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