Salinigranum salinum (JCM 30033, CGMCC 1.12572, YJ-50-S2)

Name: Salinigranum salinum (JCM 30033, CGMCC 1.12572, YJ-50-S2)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140643

Type strain

Strain Designation YJ-50-S2

Culture col. no. JCM 30033 CGMCC 1.12572 YJ-50-S2

NCBI tax ID(s) 1364937

Special Collections JCM Literature strains

History JCM <-- H.-L. Cui; Jiangsu Univ., China; YJ-50-S2.

Links

Salinigranum salinum YJ-50-S2 is an anaerobe, Gram-negative, motile archaeon that forms circular colonies and was isolated from sediment sample from Yangjiang marine solar saltern.

Gram-negative motile pleomorphic-shaped colony-forming anaerobe genome sequence 16S sequence Archaea

Name and taxonomic classification

SI-ID 131904

JCM 30033

@ref 20215

Last LPSN update 2026-05-29 08:39:46

Domain Archaea

Phylum Methanobacteriota

Class Halobacteria

Order Halobacteriales

Family Haloferacaceae

Genus Salinigranum

Species Salinigranum salinum

Full scientific name Salinigranum salinum Wang et al. 2016

Morphology

Cell morphology

@ref	Gram stain	Cell width	Cell shape	Motility
43079	negative	1.0-4.0 µm	pleomorphic-shaped

Colony morphology

@ref	Colony color	Colony shape	Medium used
43079	red	circular	agar plates

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition
43079	agar plates		agar plates containing 2.6 M NaCl
43079	NHM liquid medium

Culture temp

@ref	Growth	Type	Temperature (°C)
43079	positive	growth	25-50
43079	positive	optimum	37
67770	positive	growth	37

Culture pH

@ref	Ability	Type	PH	PH range
43079	positive	optimum	7.5
43079	positive	growth	5.0-9.5	alkaliphile

Physiology and metabolism

Oxygen tolerance

43079

Oxygen toleranceanaerobe

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43079	NaCl	positive	optimum	2.6 M
43079	NaCl	positive	growth	0.9-4.8 M
43079	MgCl2	positive	optimum	0.03 M
43079	MgCl2	positive	growth	0-1.0 M

Observation

@ref	Observation
43079	lyse in distilled water
43079	lyse minimal NaCl concentration

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43079	30089 ChEBI	acetate	+	carbon source
43079	73706 ChEBI	bromosuccinate	-	assimilation
43079		casein	-	hydrolysis
43079	16947 ChEBI	citrate	+	carbon source
43079	15824 ChEBI	D-fructose	-	assimilation
43079	12936 ChEBI	D-galactose	-	assimilation
43079	17634 ChEBI	D-glucose	-	assimilation
43079	16899 ChEBI	D-mannitol	-	assimilation
43079	16024 ChEBI	D-mannose	-	assimilation
43079	16988 ChEBI	D-ribose	-	assimilation
43079	17924 ChEBI	D-sorbitol	+	carbon source
43079	65327 ChEBI	D-xylose	-	assimilation
43079	28262 ChEBI	dimethyl sulfoxide	+	anaerobic growth
43079	29806 ChEBI	fumarate	-	assimilation
43079	5291 ChEBI	gelatin	-	hydrolysis
43079	17754 ChEBI	glycerol	+	carbon source
43079	15428 ChEBI	glycine	-	assimilation
43079	16977 ChEBI	L-alanine	-	assimilation
43079	16467 ChEBI	L-arginine	+	assimilation
43079	29991 ChEBI	L-aspartate	-	assimilation
43079	29985 ChEBI	L-glutamate	+	assimilation
43079	18019 ChEBI	L-lysine	-	assimilation
43079	15729 ChEBI	L-ornithine	-	assimilation
43079	17266 ChEBI	L-sorbose	-	assimilation
43079	24996 ChEBI	lactate	+	carbon source
43079	17716 ChEBI	lactose	-	assimilation
43079	25115 ChEBI	malate	-	assimilation
43079	17306 ChEBI	maltose	-	assimilation
43079	17632 ChEBI	nitrate	+	reduction
43079	17632 ChEBI	nitrate	-	builds gas from
43079	17632 ChEBI	nitrate	+	anaerobic growth
43079	15361 ChEBI	pyruvate	+	carbon source
43079	28017 ChEBI	starch	-	hydrolysis
43079	28017 ChEBI	starch	-	assimilation
43079	17992 ChEBI	sucrose	+	carbon source
43079	53426 ChEBI	tween 80	-	hydrolysis

Antibiotic resistance

@ref	ChEBI	Metabolite	Resistance conc.	Sensitivity conc.
43079	28971	ampicillin	10 µg (disc)
43079	28669	bacitracin		0.04 Unit (disc)
43079	17698	chloramphenicol	30 µg (disc)
43079	100241	ciprofloxacin		5 µg (disc)
43079	48923	erythromycin	15 µg (disc)
43079	17833	gentamicin	10 µg (disc)
43079	6104	kanamycin	30 µg (disc)
43079	100147	nalidixic acid	30 µg (disc)
43079	7507	neomycin	30 µg (disc)
43079	71415	nitrofurantoin		300 µg (disc)
43079	100246	norfloxacin		10 µg (disc)
43079	28368	novobiocin		30 µg (disc)
43079	7660	nystatin	100 µg (disc)
43079	18208	penicillin g	10 Unit (disc)
43079	28077	rifampicin	5 µg (disc)
43079	17076	streptomycin	10 µg (disc)
43079	27902	tetracycline	30 µg (disc)
43079	45924	trimethoprim	5 µg (disc)
43079	28001	vancomycin	30 µg (disc)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
43079	16136 ChEBI	hydrogen sulfide
43079	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
43079	catalase	+	1.11.1.6
43079	cytochrome oxidase	+	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
43079	sediment sample from Yangjiang marine solar saltern	2012	Guangdong Province, China	China	CHN	Asia	21	111 21/111
67770	Yangjiang marine solar saltern		Guangxi Province	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence KC918822 (>99% sequence identity) for Salinigranum salinum subclade from Microbeatlas

Aquatic Samples	417
Soil Samples	53
Animal Samples	1
Plant Samples	0
Total Samples	471

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM917654v1 assembly for Salinigranum salinum YJ-50-S2	contig	GCA_009176545	1364937.3	2994588711	1364937	75.12

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
43079	Salinigranum salinum strain YJ-50-S2 16S ribosomal RNA gene, complete sequence	KC918822	1466		1364937

GC content

@ref	GC-content (mol%)	Method
43079	65.2	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Salinigranum salinum YJ-50-S2
NCBI: GCA_009176545.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	76.53	yes
125438	anaerobic	anaerobicⓘ	no	65.74	yes
125438	aerobic	aerobicⓘ	yes	64.83	yes
125438	spore-forming	spore-formingⓘ	no	84.56	no
125438	thermophilic	thermophileⓘ	no	82.24	yes
125438	flagellated	motile2+ⓘ	no	84.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	International Committee on Systematics of Prokaryotes Subcommittee on the taxonomy of Halobacteria and Subcommittee on the taxonomy of Halomonadaceae. Minutes of the joint open meeting, 11 July 2017, Valencia, Spain.	Arahal DR, Oren A, Ventosa A.	Int J Syst Evol Microbiol	10.1099/ijsem.0.002296	2017
Phylogeny	Salinigranum halophilum sp. nov., isolated from marine solar salterns.	Zhao YJ, Tao CQ, Zeng CL, Zhu L, Cui HL	Int J Syst Evol Microbiol	10.1099/ijsem.0.003951	2020
Phylogeny	Salinigranum salinum sp. nov., isolated from a marine solar saltern.	Wang Z, Xu JQ, Xu WM, Li Y, Zhou Y, Lu ZZ, Hou J, Zhu L, Cui HL	Int J Syst Evol Microbiol	10.1099/ijsem.0.001138	2016

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43079	Zhao Wang, Jia-Qi Xu, Wen-Mei Xu, Yang Li, Yao Zhou, Zhen-Zhen Lü, Jing Hou, Lin Zhu and Heng-Lin Cui: Salinigranum salinum sp. nov., isolated from a marine solar saltern. IJSEM 66: 3017 - 3021 2016 ( DOI 10.1099/ijsem.0.001138 , PubMed 27151192 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Salinigranum salinum (JCM 30033, CGMCC 1.12572, YJ-50-S2)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Halophily

Observation

Metabolite utilization

Antibiotic resistance

Metabolite production

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_009176545

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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