Halorubrum pallidum PJ61 | Type strain | CGMCC 1.15212, JCM 30955

Strain identifier

BacDive ID: 140642

Type strain:

Species: Halorubrum pallidum

Strain Designation: PJ61

Culture col. no.: CGMCC 1.15212, JCM 30955

Section

Name and taxonomic classification
Morphology and physiology
Culture and growth conditions
Isolation, sampling and environmental information
Molecular biology
Strain availability

External links

Information on the name and the taxonomic classification.Name and taxonomic classification

[Ref.: #43078]	Genus	Halorubrum
[Ref.: #43078]	Species	Halorubrum pallidum
[Ref.: #43078]	Strain Designation	PJ61
[Ref.: #43078]	Type strain

		Prokaryotic Nomenclature Up-to-date (PNU)	Taxonomical status	Literature reference
[Ref.: #20215]	Domain	Archaea
[Ref.: #20215]	Phylum	Euryarchaeota
[Ref.: #20215]	Class	Halobacteria		Int. J. Syst. Evol. Microbiol. 52:685
[Ref.: #20215]	Family	Halorubraceae		Int. J. Syst. Evol. Microbiol. 66:2464
[Ref.: #20215]	Genus	Halorubrum	gen. nov. (VL)	Int. J. Syst. Bacteriol. 46:362
[Ref.: #20215]	Species	Halorubrum pallidum	sp. nov. (VP)	Int. J. Syst. Evol. Microbiol. 66:2985*
[Ref.: #20215]	Full Scientific Name	Halorubrum pallidum Chen et al. 2016

Information on morphological and physiological propertiesMorphology and physiology

[Ref.: #43078]	Gram stain	negative
[Ref.: #43078]	Cell length	1.0-1.2 µm
[Ref.: #43078]	Cell width	0.5-0.8 µm
[Ref.: #43078]	Cell shape	square-shaped
[Ref.: #43078]	Motility	no

[Ref.: #43078]	Cell shape	oval-shaped

[Ref.: #43078]	Colony size	1.0-2.0 mm
[Ref.: #43078]	Colony color	pale
[Ref.: #43078]	Colony shape	circular
[Ref.: #43078]	Cultivation medium used	AS-158 agar

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #43078]		catalase	+	1.11.1.6
[Ref.: #43078]		cytochrome oxidase	+	1.9.3.1

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43078]		NaCl		growth	2.6-5.1	M
[Ref.: #43078]		NaCl		optimum	3.4	M

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #43078]	Ampicillin				yes	10	µg (disc)
[Ref.: #43078]	Bacitracin				yes	0.04	Unit
[Ref.: #43078]	Chloramphenicol				yes	30	µg (disc)
[Ref.: #43078]	Ciprofloxacin				yes	5	µg (disc)
[Ref.: #43078]	Erythromycin				yes	15	µg (disc)
[Ref.: #43078]	Kanamycin				yes	10	µg (disc)
[Ref.: #43078]	Neomycin	yes	30	µg (disc)
[Ref.: #43078]	Norfloxacin				yes	10	µg (disc)
[Ref.: #43078]	Novobiocin	yes	30	µg (disc)
[Ref.: #43078]	Penicillin G				yes	10	Unit
[Ref.: #43078]	Rifampicin				yes	5	µg (disc)
[Ref.: #43078]	Streptomycin				yes	10	µg (disc)
[Ref.: #43078]	Tetracycline				yes	30	µg (disc)
[Ref.: #43078]	Vancomycin				yes	30	µg (disc)
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43078]		Hydrogen sulfide	yes
[Ref.: #43078]		Indole	no

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43078]	Casein	-	hydrolysis
[Ref.: #43078]	Citric acid	-	carbon source
[Ref.: #43078]	D-Fructose	+	carbon source
[Ref.: #43078]	D-Fructose	+	builds acid from
[Ref.: #43078]	D-Galactose	+	carbon source
[Ref.: #43078]	D-Galactose	+	builds acid from
[Ref.: #43078]	D-Glucose	+	carbon source
[Ref.: #43078]	D-Glucose	+	builds acid from
[Ref.: #43078]	D-Mannitol	-	carbon source
[Ref.: #43078]	D-Mannose	+	carbon source
[Ref.: #43078]	D-Mannose	+	builds acid from
[Ref.: #43078]	D-Ribose	-	carbon source
[Ref.: #43078]	D-Sorbitol	-	carbon source
[Ref.: #43078]	D-Sorbose	-	carbon source
[Ref.: #43078]	D-Sorbose	+	builds acid from
[Ref.: #43078]	D-Xylose	+	carbon source
[Ref.: #43078]	D-Xylose	+	builds acid from
[Ref.: #43078]	Fumaric acid	+	carbon source
[Ref.: #43078]	Gelatin	-	hydrolysis
[Ref.: #43078]	Glycerol	+	carbon source
[Ref.: #43078]	Glycine	-	carbon source
[Ref.: #43078]	L-Alanine	-	carbon source
[Ref.: #43078]	L-Arginine	-	carbon source
[Ref.: #43078]	L-Aspartic acid	-	carbon source
[Ref.: #43078]	L-Glutamic acid	+	carbon source
[Ref.: #43078]	L-Lysine	-	carbon source
[Ref.: #43078]	L-Ornithine	-	carbon source
[Ref.: #43078]	Lactic acid	+	carbon source
[Ref.: #43078]	Lactose	-	carbon source
[Ref.: #43078]	Magnesium(2+)	+	required for growth
[Ref.: #43078]	Malic acid	+	carbon source
[Ref.: #43078]	Maltose	+	carbon source
[Ref.: #43078]	Nitrate	-	reduction
[Ref.: #43078]	Nitrite	-	reduction
[Ref.: #43078]	Pyruvic acid	+	carbon source
[Ref.: #43078]	Starch	-	hydrolysis
[Ref.: #43078]	Starch	-	carbon source
[Ref.: #43078]	Succinic acid	+	carbon source
[Ref.: #43078]	Sucrose	-	carbon source
[Ref.: #43078]	Tween 20	-	hydrolysis
[Ref.: #43078]	Tween 40	-	hydrolysis
[Ref.: #43078]	Tween 60	-	hydrolysis
[Ref.: #43078]	Tween 80	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

[Ref.: #43078]

Observation

Cell lysis in distilled water

[Ref.: #43078]

Oxygen tolerance

aerobe

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #43078]

Culture medium

AS-158 agar

[Ref.: #43078]

Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #43078]			optimum	38 ̊C
[Ref.: #43078]			growth	25-45 ̊C

	pH	Kind of pH		pH
[Ref.: #43078]			optimum	8
[Ref.: #43078]			growth	7.5-8.5

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #43078]	Sample type/isolated from	subterranean rock salt
[Ref.: #43078]	Geographic location (country and/or sea, region)	Yuanyongjing Salt Mine, Yunnan province, China
[Ref.: #43078]	Country	China
[Ref.: #43078]	Continent	Asia
[Ref.: #43078]	Geographic location	25.0000°/101.0000°
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databassMolecular biology

[Ref.: #43078]

GC-content

65.1 mol%

thermal denaturation, midpoint method (Tm)

Sequence information:

	Sequence database	Sequence accession description	Sequence accession number	Sequence length (bp)	Associated NCBI tax ID
[Ref.: #43078]	GenBank/EMBL/DDBJ	16S rRNA gene sequences	KJ644242	1471	1526114
[Ref.: #43078]	GenBank/EMBL/DDBJ	rpoB gene sequences	KT803863	1830	1526114
[Ref.: #43078]	GenBank/EMBL/DDBJ	ef-2 gene sequences	KT803860	1802	1526114

Availability in culture collectionsStrain availability

[Ref.: #43078]

Culture collection no.

CGMCC 1.15212, JCM 30955

References

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#43078

Shaoxing Chen, Hong-Can Liu, Jian Zhou and Hua Xiang: Halorubrum pallidum sp. nov., an extremely halophilic archaeon isolated from a subterranean rock salt. IJSEM 66: 2980 - 2986 2016 ( DOI 10.1099/ijsem.0.001129 )

* These References are textmined

Search for species Halorubrum pallidum in external resources:
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