Name: Streptomyces chitinivorans RC1832
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140641

Type strain:

Species: Streptomyces chitinivorans

Strain Designation: RC1832

Culture col. no.: JCM 30611, KCTC 29696), KCTC 29696

Strain history: <- Vishakha Raina, KIIT Univ. India

NCBI tax ID(s): 1257027 (species)

Section

Streptomyces chitinivorans RC1832 is an aerobe, spore-forming, thermophilic bacterium that builds an aerial mycelium and was isolated from estuarine brackish water sediment samples collected from a fish dumping yard.

Gram-positive
spore-forming
aerobe
thermophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	Streptomycetales
	Family	Streptomycetaceae
	Genus	*Streptomyces*
	Species	**Streptomyces chitinivorans**
	Full Scientific Name (LPSN)	Streptomyces chitinivorans Ray et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43077]	Gram stain	positive
[Ref.: #43077]	Motility	no

[Ref.: #43077]	Pigment production	no
[Ref.: #43077]	Pigment name	diffusible pigments
[Ref.: #43077]	Pigment production	no
[Ref.: #43077]	Pigment name	melanin pigment

[Ref.: #43077]	Multicellular complex forming ability	yes
[Ref.: #43077]	Multicellular complex name	aerial mycelium
[Ref.: #43077]	Multicellular complex color	white

[Ref.: #43077]	Multicellular complex forming ability	yes
[Ref.: #43077]	Multicellular complex name	substrate mycelia
[Ref.: #43077]	Multicellular complex color	off white

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43077]

Culture medium

ISP3

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Culture medium growth

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Culture medium

ISP4

[Ref.: #43077]

Culture medium growth

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Culture medium

ISP6

[Ref.: #43077]

Culture medium growth

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Culture medium

ISP7

[Ref.: #43077]

Culture medium growth

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Culture medium

ISP2

[Ref.: #43077]

Culture medium growth

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Culture medium

ISP5

[Ref.: #43077]

Culture medium growth

		Temperature
[Ref.: #43077]	maximum	50 °C
[Ref.: #43077]	optimum	30 °C
[Ref.: #43077]	growth	30-40 °C
[Ref.: #67770]	growth	28 °C
[Ref.: #67771]	growth	30 °C

[Ref.: #43077]	Temperature range	thermophilic
[Ref.: #43077]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43077]			optimum	8
[Ref.: #43077]			growth	7-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43077]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #43077]	Spore description	round, non motile with smooth surfaces, forming spore chains which are straight to flexous
[Ref.: #43077]	Type of spore	spore
[Ref.: #43077]	Ability of spore formation	yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43077]		NaCl		maximum	18	%(w/v)

[Ref.: #67770]

Observation

quinones: MK-9(H₆), MK-9(H₈)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43077]	arabinose ChEBI	+	carbon source
[Ref.: #43077]	arabinose ChEBI	+	assimilation
[Ref.: #43077]	casein	+	degradation
[Ref.: #43077]	cellobiose ChEBI	+	carbon source
[Ref.: #43077]	cellobiose ChEBI	+	assimilation
[Ref.: #43077]	chitin ChEBI	+	degradation
[Ref.: #43077]	citrate ChEBI	-	assimilation
[Ref.: #43077]	fructose ChEBI	+	carbon source
[Ref.: #43077]	galactose ChEBI	+	carbon source
[Ref.: #43077]	glucose ChEBI	+	carbon source
[Ref.: #43077]	lactose ChEBI	-	carbon source
[Ref.: #43077]	lecithin ChEBI	+	degradation
[Ref.: #43077]	maltose ChEBI	+	carbon source
[Ref.: #43077]	mannitol ChEBI	+	assimilation
[Ref.: #43077]	mannose ChEBI	+	carbon source
[Ref.: #43077]	melibiose ChEBI	+	assimilation
[Ref.: #43077]	myo-inositol ChEBI	+	carbon source
[Ref.: #43077]	pectin ChEBI	+	degradation
[Ref.: #43077]	raffinose ChEBI	+	carbon source
[Ref.: #43077]	rhamnose ChEBI	+	carbon source
[Ref.: #43077]	rhamnose ChEBI	+	assimilation
[Ref.: #43077]	ribose ChEBI	+	carbon source
[Ref.: #43077]	salicin ChEBI	-	assimilation
[Ref.: #43077]	starch ChEBI	+	degradation
[Ref.: #43077]	sucrose ChEBI	+	carbon source
[Ref.: #43077]	trehalose ChEBI	+	assimilation
[Ref.: #43077]	tributyrin ChEBI	+	degradation
[Ref.: #43077]	urea ChEBI	-	assimilation
[Ref.: #43077]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration
[Ref.: #43077]	amoxicillin ChEBI	yes	50	µg (disc)
[Ref.: #43077]	cephalexin ChEBI	yes	30	µg (disc)
[Ref.: #43077]	ciprofloxacin ChEBI	yes	30	µg (disc)
[Ref.: #43077]	cloxacillin ChEBI	yes	30	µg (disc)
[Ref.: #43077]	co-trimoxazole ChEBI	yes	25	µg (disc)
[Ref.: #43077]	erythromycin ChEBI	yes	10	µg (disc)
[Ref.: #43077]	furazolidone ChEBI	yes	50	µg (disc)
[Ref.: #43077]	nalidixic acid ChEBI	yes	30	µg (disc)
[Ref.: #43077]	norfloxacin ChEBI	yes	10	µg (disc)
[Ref.: #43077]	oxytetracycline ChEBI	yes	30	µg (disc)

	Enzyme	Enzyme activity	EC number
[Ref.: #43077]	amylase	+
[Ref.: #43077]	caseinase	+	3.4.21.50
[Ref.: #43077]	catalase	+	1.11.1.6
[Ref.: #43077]	cellulase	+	3.2.1.4
[Ref.: #43077]	chitinase	+	3.2.1.14
[Ref.: #43077]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43077]	gelatinase	+
[Ref.: #43077]	lecithinase	+
[Ref.: #43077]	lipase (C 14)	+

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43077]

Fatty acid	Percentage
C16:0 iso	39.33
C15:0 anteiso	21.28
C17:1 anteiso	11.18
C14:0 iso	7.48
C15:0 iso	2.78
C16:1 H	2.67
C16:0	2.55
anteiso-C17:1 C	2.07
C17:0 iso	1.45
C19:1trans7	1.18
C16:1cis9	1.12
C15:0	1.05
9-methyl C16:0	0.64
C18:1 iso H	0.62
C17:0	0.6
C17:1cis9	0.59
C18:0	0.53
C12:0	0.52
C18:1 iso H	0.39
C14:0	0.38
C13:0 anteiso	0.26
10-methyl C17:0	0.22
C15:1 B	0.2
C18:1cis9	0.12
C12:0 iso	0.11

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43077]	Sample type/isolated from	estuarine brackish water sediment samples collected from a fish dumping yard
[Ref.: #43077]	Geographic location (country and/or sea, region)	Balugaon Village, Chilika Lake, Odisha, India
[Ref.: #43077]	Country	India
[Ref.: #43077]	Country ISO 3 Code	IND
[Ref.: #43077]	Continent	Asia
[Ref.: #43077]	Geographic location	20.0000°/85.0000°

[Ref.: #67770]	Sample type/isolated from	Sediment of a fish dumping yard at Balugaon near Chilika Lake
[Ref.: #67770]	Country	India
[Ref.: #67770]	Country ISO 3 Code	IND
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From Sediment of Lake
[Ref.: #67771]	Country	India
[Ref.: #67771]	Country ISO 3 Code	IND
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Waste	#Solid animal waste
#Environmental	#Aquatic	#Brackish
#Environmental	#Aquatic	#Estuary
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JQ862603 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	4
Soil Samples	39
Animal Samples	14
Plant Samples	10
Total Samples	67

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43077]	16S rRNA gene sequences	JQ862603	1435	ENA	1257027 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces chitinivorans RC1832	GCA_029846675.1	contig	GenBank	1257027 tax ID	*

[Ref.: #43077]

GC-content

66.2 mol%

thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #43077]

Culture collection no.

JCM 30611, KCTC 29696), KCTC 29696

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces chitinivorans sp. nov., a chitinolytic strain isolated from estuarine lake sediment.	Ray L, Mishra SR, Panda AN, Das S, Rastogi G, Pattanaik AK, Adhya TK, Suar M, Raina V	Int J Syst Evol Microbiol	10.1099/ijsem.0.001176	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43077

Lopamudra Ray, Samir Ranjan Mishra, Ananta Narayan Panda, Surajit Das, Gurdeep Rastogi, Ajit Kumar Pattanaik, Tapan Kumar Adhya, Mrutyunjay Suar and Vishakha Raina: Streptomyces chitinivorans sp. nov., a chitinolytic strain isolated from estuarine lake sediment. IJSEM 66: 3241 - 3248 2016 ( DOI 10.1099/ijsem.0.001176 , PubMed 27220564 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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